Wall clock time and date at job start Tue Mar 31 2020 14:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.47099 * 2 1 4 4 C 1.36920 * 119.99516 * 96.69610 * 3 2 1 5 5 H 1.08000 * 119.99387 * 172.53747 * 4 3 2 6 6 C 1.39015 * 120.00145 * 352.53717 * 4 3 2 7 7 N 1.31384 * 120.00127 * 332.60386 * 6 4 3 8 8 Si 1.86801 * 120.00068 * 152.60376 * 6 4 3 9 9 H 1.48500 * 109.47011 * 94.97703 * 8 6 4 10 10 H 1.48502 * 109.47155 * 214.97657 * 8 6 4 11 11 H 1.48500 * 109.46943 * 334.97753 * 8 6 4 12 12 C 1.34775 * 120.00123 * 276.69320 * 3 2 1 13 13 O 1.21618 * 119.99721 * 185.19813 * 12 3 2 14 14 C 1.47569 * 119.99940 * 5.20653 * 12 3 2 15 15 N 1.31647 * 126.46624 * 5.96113 * 14 12 3 16 16 N 1.29327 * 110.36308 * 180.09093 * 15 14 12 17 17 C 1.35478 * 109.51359 * 359.79095 * 16 15 14 18 18 C 1.35483 * 107.59290 * 0.22768 * 17 16 15 19 19 Br 1.89100 * 127.27005 * 179.86349 * 18 17 16 20 20 C 1.51311 * 110.26766 * 180.34138 * 17 16 15 21 21 C 1.54539 * 104.17935 * 16.53303 * 20 17 16 22 22 C 1.47437 * 139.88852 * 179.70307 * 16 15 14 23 23 H 1.08997 * 109.46789 * 299.99903 * 1 2 3 24 24 H 1.09006 * 109.47236 * 59.99428 * 1 2 3 25 25 H 1.09001 * 109.47106 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47166 * 240.00758 * 2 1 3 27 27 H 1.08997 * 109.47423 * 120.00622 * 2 1 3 28 28 H 0.96996 * 120.00088 * 180.02562 * 7 6 4 29 29 H 1.08999 * 110.48964 * 257.85298 * 20 17 16 30 30 H 1.09007 * 110.48630 * 135.20192 * 20 17 16 31 31 H 1.08999 * 110.94590 * 216.55902 * 21 20 17 32 32 H 1.08992 * 110.95411 * 92.84278 * 21 20 17 33 33 H 1.08998 * 110.21100 * 43.72956 * 22 16 15 34 34 H 1.08994 * 110.27519 * 281.85496 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3769 1.9805 1.1777 5 1 2.8488 2.9519 1.1675 6 6 2.1335 1.3386 2.3866 7 7 1.1407 0.4841 2.4884 8 14 3.2179 1.6910 3.8662 9 1 2.5868 2.7428 4.7032 10 1 3.3798 0.4514 4.6677 11 1 4.5493 2.1589 3.4038 12 6 2.1147 2.0620 -1.1592 13 8 2.6080 3.1735 -1.1724 14 6 1.6216 1.4586 -2.4124 15 7 0.9709 0.3202 -2.5295 16 7 0.6892 0.0885 -3.7703 17 6 1.1566 1.1026 -4.5375 18 6 1.7586 1.9947 -3.7145 19 35 2.6032 3.6146 -4.2031 20 6 0.8285 0.8528 -5.9933 21 6 -0.2667 -0.2368 -5.9530 22 6 0.0238 -0.9289 -4.6046 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 0.9706 0.0365 3.3319 29 1 1.7078 0.4905 -6.5258 30 1 0.4461 1.7609 -6.4595 31 1 -0.1523 -0.9351 -6.7820 32 1 -1.2610 0.2096 -5.9556 33 1 -0.9075 -1.2488 -4.1373 34 1 0.6826 -1.7841 -4.7545 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888555730.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:34 Heat of formation + Delta-G solvation = 64.584020 kcal Electronic energy + Delta-G solvation = -20531.479097 eV Core-core repulsion = 17320.211315 eV Total energy + Delta-G solvation = -3211.267782 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 327.032 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.80910 -40.23073 -37.24792 -36.99057 -33.85703 -33.44103 -31.31008 -30.98207 -30.15080 -28.00035 -27.00219 -24.45315 -23.64490 -22.31098 -21.45172 -20.42449 -18.75176 -17.92642 -17.57268 -17.02897 -16.53620 -15.96060 -15.76594 -15.18705 -14.83268 -14.64114 -14.49807 -14.12334 -13.91948 -13.75399 -13.20915 -13.09942 -12.85652 -12.65866 -12.47593 -12.16494 -12.11099 -12.07942 -12.01260 -11.75316 -11.49929 -11.06511 -10.82903 -10.26588 -9.92104 -9.77340 -9.56306 -8.39593 -5.81965 0.65475 0.78617 0.88451 1.40777 1.43640 1.56446 1.60598 2.27556 2.45810 2.93366 3.14361 3.21166 3.54067 3.72506 3.95377 4.09719 4.22270 4.43520 4.53009 4.58636 4.59456 4.87890 4.89146 4.98861 5.01610 5.11779 5.16368 5.21217 5.42035 5.47370 5.64302 5.88113 6.08231 6.50710 7.00568 7.16993 7.44331 8.04966 8.59964 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.017224 B = 0.005371 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.294947 B = 5211.561398 C = 6708.716382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.135 3.865 3 N -0.430 5.430 4 C -0.352 4.352 5 H 0.079 0.921 6 C 0.008 3.992 7 N -0.859 5.859 8 Si 0.984 3.016 9 H -0.272 1.272 10 H -0.263 1.263 11 H -0.276 1.276 12 C 0.488 3.512 13 O -0.608 6.608 14 C 0.014 3.986 15 N -0.247 5.247 16 N -0.313 5.313 17 C 0.033 3.967 18 C -0.185 4.185 19 Br -0.008 7.008 20 C -0.058 4.058 21 C -0.110 4.110 22 C 0.106 3.894 23 H 0.052 0.948 24 H 0.030 0.970 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.077 0.923 28 H 0.277 0.723 29 H 0.118 0.882 30 H 0.109 0.891 31 H 0.148 0.852 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.272 -6.725 -19.478 21.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.012 3.988 3 N -0.146 5.146 4 C -0.480 4.480 5 H 0.097 0.903 6 C -0.196 4.196 7 N -0.495 5.495 8 Si 0.807 3.193 9 H -0.198 1.198 10 H -0.188 1.188 11 H -0.201 1.201 12 C 0.277 3.723 13 O -0.494 6.494 14 C -0.147 4.147 15 N -0.081 5.081 16 N -0.102 5.102 17 C -0.097 4.097 18 C -0.276 4.276 19 Br 0.076 6.924 20 C -0.097 4.097 21 C -0.148 4.148 22 C -0.011 4.011 23 H 0.071 0.929 24 H 0.049 0.951 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.136 0.864 30 H 0.127 0.873 31 H 0.166 0.834 32 H 0.116 0.884 33 H 0.129 0.871 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.372 -6.886 -18.768 20.464 hybrid contribution 0.622 0.735 1.004 1.391 sum -3.750 -6.151 -17.764 19.169 Atomic orbital electron populations 1.21713 0.95429 1.00280 0.99820 1.21461 0.95661 0.81691 1.00029 1.43926 1.53347 1.12300 1.05074 1.19666 1.39428 1.05304 0.83593 0.90264 1.25984 0.96404 0.96439 1.00800 1.70230 1.23762 1.27895 1.27646 0.85096 0.78696 0.78389 0.77116 1.19784 1.18762 1.20067 1.17077 0.86694 0.85836 0.82726 1.90594 1.51574 1.21229 1.86000 1.21921 1.04187 0.94023 0.94550 1.74002 1.17011 1.16855 1.00257 1.47877 1.40415 1.19054 1.02855 1.22861 0.99416 0.90173 0.97210 1.21171 1.13910 0.99104 0.93410 1.96466 1.78881 1.26445 1.90623 1.21108 1.01249 1.01966 0.85332 1.22890 0.99368 0.97467 0.95116 1.23227 0.99154 0.89262 0.89467 0.92936 0.95084 0.92560 0.92621 0.90502 0.91283 0.86394 0.87302 0.83423 0.88430 0.87140 0.86261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.34 9.10 71.98 0.66 -4.68 16 2 C 0.13 6.78 4.88 86.38 0.42 7.20 16 3 N -0.43 -24.70 2.64 -639.08 -1.68 -26.39 16 4 C -0.35 -21.15 9.42 84.09 0.79 -20.36 16 5 H 0.08 5.09 7.31 -2.91 -0.02 5.07 16 6 C 0.01 0.45 4.85 84.95 0.41 0.86 16 7 N -0.86 -45.34 8.79 21.68 0.19 -45.15 16 8 Si 0.98 42.99 29.63 68.60 2.03 45.02 16 9 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 10 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 C 0.49 27.96 7.57 86.71 0.66 28.61 16 13 O -0.61 -37.76 15.21 -4.09 -0.06 -37.82 16 14 C 0.01 0.68 6.53 42.44 0.28 0.96 16 15 N -0.25 -10.12 6.88 -48.37 -0.33 -10.45 16 16 N -0.31 -9.34 4.42 -329.27 -1.46 -10.79 16 17 C 0.03 0.96 7.48 41.55 0.31 1.27 16 18 C -0.19 -7.44 6.68 22.43 0.15 -7.29 16 19 Br -0.01 -0.29 32.72 -20.37 -0.67 -0.95 16 20 C -0.06 -0.83 6.85 30.57 0.21 -0.62 16 21 C -0.11 -0.79 7.16 31.56 0.23 -0.56 16 22 C 0.11 1.53 7.77 86.65 0.67 2.21 16 23 H 0.05 2.74 6.43 -2.39 -0.02 2.72 16 24 H 0.03 1.44 6.05 -2.38 -0.01 1.43 16 25 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.06 2.67 6.04 -2.39 -0.01 2.65 16 27 H 0.08 4.05 5.82 -2.39 -0.01 4.03 16 28 H 0.28 13.46 8.31 -92.71 -0.77 12.69 16 29 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.11 1.35 8.14 -2.38 -0.02 1.34 16 31 H 0.15 -0.13 8.14 -2.39 -0.02 -0.15 16 32 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -78.98 296.86 3.94 -75.04 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: 1.14 Total: 3.91 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: 4.78 Total: 7.59 kcal Atomic # 7 Polarization: -89.51 SS G_CDS: -3.28 Total: -92.79 kcal Atomic # 8 Polarization: -37.76 SS G_CDS: -0.06 Total: -37.82 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Atomic # 35 Polarization: -0.29 SS G_CDS: -0.67 Total: -0.95 kcal Total: -78.98 3.94 -75.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888555730.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.623 kcal (2) G-P(sol) polarization free energy of solvation -78.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds