Wall clock time and date at job start Tue Mar 31 2020 15:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00158 * 2 1 4 4 H 1.48503 * 109.47277 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47342 * 119.99635 * 3 2 1 6 6 H 1.48497 * 109.47467 * 239.99373 * 3 2 1 7 7 C 1.37883 * 119.99885 * 180.27387 * 2 1 3 8 8 H 1.08002 * 119.99786 * 179.73349 * 7 2 1 9 9 C 1.50701 * 119.99686 * 359.72608 * 7 2 1 10 10 N 1.46508 * 109.46838 * 180.02562 * 9 7 2 11 11 C 1.34963 * 125.97304 * 124.71593 * 10 9 7 12 12 C 1.35245 * 107.86198 * 179.84000 * 11 10 9 13 13 C 1.40413 * 107.86593 * 0.42234 * 12 11 10 14 14 N 1.40109 * 125.97532 * 179.70316 * 13 12 11 15 15 C 1.34772 * 120.00133 * 0.02562 * 14 13 12 16 16 O 1.21653 * 119.99902 * 359.97438 * 15 14 13 17 17 C 1.47171 * 120.00262 * 179.97438 * 15 14 13 18 18 C 1.36013 * 123.46090 * 354.11401 * 17 15 14 19 19 S 1.70448 * 110.81642 * 179.97438 * 18 17 15 20 20 C 1.75497 * 92.44462 * 359.97438 * 19 18 17 21 21 C 1.32768 * 110.58041 * 359.71570 * 20 19 18 22 22 C 1.50699 * 123.46185 * 180.27267 * 21 20 19 23 23 F 1.39904 * 109.47121 * 12.75089 * 22 21 20 24 24 F 1.39907 * 109.47309 * 132.75111 * 22 21 20 25 25 N 1.31235 * 108.04972 * 359.74137 * 13 12 11 26 26 H 0.96996 * 119.99840 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47306 * 299.99541 * 9 7 2 28 28 H 1.08994 * 109.46961 * 60.00327 * 9 7 2 29 29 H 1.08003 * 126.06921 * 359.97064 * 11 10 9 30 30 H 1.07998 * 126.06286 * 180.14027 * 12 11 10 31 31 H 0.97001 * 119.99698 * 180.02562 * 14 13 12 32 32 H 1.08000 * 124.59140 * 0.02562 * 18 17 15 33 33 H 1.08004 * 124.70897 * 179.97438 * 20 19 18 34 34 H 1.08994 * 109.47007 * 252.75212 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1030 1.6963 -1.2124 7 6 2.0045 -1.1941 -0.0057 8 1 3.0845 -1.1941 -0.0101 9 6 1.2509 -2.4992 -0.0057 10 7 2.2030 -3.6127 -0.0117 11 6 2.2487 -4.6215 0.8838 12 6 3.2624 -5.4441 0.5306 13 6 3.8667 -4.9134 -0.6204 14 7 4.9603 -5.4620 -1.3033 15 6 5.5265 -6.6029 -0.8627 16 8 5.0883 -7.1562 0.1282 17 6 6.6748 -7.1794 -1.5802 18 6 7.1482 -6.6869 -2.7564 19 16 8.4831 -7.5966 -3.3004 20 6 8.4113 -8.6710 -1.9146 21 6 7.4196 -8.3216 -1.1040 22 6 7.1003 -9.0457 0.1785 23 9 8.1538 -9.9075 0.5021 24 9 6.9258 -8.1151 1.2085 25 7 3.2287 -3.8133 -0.9442 26 1 -0.4850 -0.8400 -0.0004 27 1 0.6280 -2.5591 0.8868 28 1 0.6207 -2.5547 -0.8932 29 1 1.5910 -4.7502 1.7307 30 1 3.5578 -6.3464 1.0454 31 1 5.3099 -5.0206 -2.0931 32 1 6.7349 -5.8345 -3.2748 33 1 9.0834 -9.4988 -1.7428 34 1 6.1846 -9.6230 0.0514 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889045288.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:03 Heat of formation + Delta-G solvation = -17.489075 kcal Electronic energy + Delta-G solvation = -24333.738954 eV Core-core repulsion = 20224.296092 eV Total energy + Delta-G solvation = -4109.442862 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.059 amu Computer time = 6.13 seconds Orbital eigenvalues (eV) -49.03910 -46.99731 -40.86953 -39.69954 -37.41218 -34.97074 -33.73925 -31.48184 -30.40521 -29.40599 -27.44409 -26.33484 -24.75315 -23.14069 -22.03043 -20.81119 -19.96368 -19.22519 -18.56305 -17.63494 -17.46465 -17.21257 -16.76029 -16.56344 -16.02469 -15.39745 -15.07016 -14.30667 -14.08893 -13.98249 -13.80094 -13.64194 -13.49280 -13.34874 -13.21658 -13.10931 -12.73959 -12.46715 -12.25688 -12.01658 -11.82416 -11.19182 -11.13172 -10.83495 -10.51755 -10.17626 -10.13879 -9.73693 -9.60448 -9.05047 -8.96497 -8.60215 -8.24854 -7.56454 -6.60262 -4.34447 0.24453 0.94247 1.26345 1.33110 2.56092 2.60321 3.00144 3.36683 3.37972 3.52822 3.56868 3.68092 3.72965 4.13349 4.19037 4.39180 4.54920 4.66445 4.84062 4.85565 5.07633 5.13551 5.40394 5.44796 5.61908 5.68004 6.12044 6.37728 6.46691 6.56457 6.72094 7.25807 7.42098 7.66686 7.79817 8.09450 8.31746 8.49466 8.59212 9.33763 10.77385 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.020089 B = 0.002696 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.470287 B =10382.528137 C =11171.679355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.023 3.977 3 Si 1.077 2.923 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.609 4.609 8 H 0.063 0.937 9 C 0.249 3.751 10 N -0.316 5.316 11 C 0.051 3.949 12 C -0.282 4.282 13 C 0.259 3.741 14 N -0.623 5.623 15 C 0.579 3.421 16 O -0.500 6.500 17 C -0.125 4.125 18 C -0.212 4.212 19 S 0.227 5.773 20 C -0.201 4.201 21 C -0.135 4.135 22 C 0.339 3.661 23 F -0.205 7.205 24 F -0.177 7.177 25 N -0.301 5.301 26 H 0.267 0.733 27 H 0.047 0.953 28 H 0.035 0.965 29 H 0.169 0.831 30 H 0.163 0.837 31 H 0.409 0.591 32 H 0.179 0.821 33 H 0.181 0.819 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.509 -19.149 -6.183 26.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.182 4.182 3 Si 0.904 3.096 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.647 4.647 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.098 5.098 11 C -0.099 4.099 12 C -0.313 4.313 13 C 0.006 3.994 14 N -0.270 5.270 15 C 0.363 3.637 16 O -0.374 6.374 17 C -0.143 4.143 18 C -0.350 4.350 19 S 0.494 5.506 20 C -0.337 4.337 21 C -0.148 4.148 22 C 0.283 3.717 23 F -0.187 7.187 24 F -0.158 7.158 25 N -0.132 5.132 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.186 0.814 30 H 0.181 0.819 31 H 0.244 0.756 32 H 0.197 0.803 33 H 0.198 0.802 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 16.799 -16.735 -7.545 24.883 hybrid contribution -0.502 -2.006 1.415 2.505 sum 16.297 -18.741 -6.130 25.581 Atomic orbital electron populations 1.70852 1.06781 1.30441 1.45904 1.25928 0.96307 1.02813 0.93106 0.83419 0.74813 0.74552 0.76857 1.20501 1.21203 1.21149 1.22106 0.95387 0.90439 1.56769 0.91834 1.19773 0.86295 0.82802 0.98021 1.48796 1.23290 1.19522 1.18165 1.22579 1.00497 0.90095 0.96685 1.21551 1.02018 1.06359 1.01371 1.19021 0.91337 0.94307 0.94748 1.42165 1.29974 1.24624 1.30209 1.17359 0.82225 0.80080 0.84031 1.90782 1.62005 1.60105 1.24476 1.19755 0.99624 0.98400 0.96503 1.25792 1.02847 1.05991 1.00397 1.83163 1.25823 1.20101 1.21466 1.25449 1.02978 1.06096 0.99187 1.20363 0.97909 0.97969 0.98583 1.19750 0.88636 0.81905 0.81452 1.92970 1.61318 1.70793 1.93585 1.93097 1.95613 1.66799 1.60277 1.77347 1.03562 1.16094 1.16184 0.92263 0.93567 0.94742 0.81407 0.81944 0.75556 0.80335 0.80212 0.85772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.26 13.65 55.43 0.76 -25.50 16 2 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 3 Si 1.08 24.85 29.90 -169.99 -5.08 19.76 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.61 -17.09 9.24 -34.44 -0.32 -17.41 16 8 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 9 C 0.25 6.28 5.57 -5.19 -0.03 6.25 16 10 N -0.32 -7.35 3.67 -62.55 -0.23 -7.58 16 11 C 0.05 1.02 11.43 -17.24 -0.20 0.82 16 12 C -0.28 -5.54 9.60 -39.83 -0.38 -5.93 16 13 C 0.26 5.16 8.11 -154.42 -1.25 3.91 16 14 N -0.62 -9.59 5.42 -12.18 -0.07 -9.66 16 15 C 0.58 8.44 7.63 -12.64 -0.10 8.35 16 16 O -0.50 -8.45 10.72 5.23 0.06 -8.40 16 17 C -0.13 -1.38 5.95 -104.63 -0.62 -2.00 16 18 C -0.21 -1.69 10.37 29.93 0.31 -1.38 16 19 S 0.23 1.33 23.02 -107.50 -2.48 -1.14 16 20 C -0.20 -1.48 10.46 28.86 0.30 -1.18 16 21 C -0.14 -1.37 5.76 -104.06 -0.60 -1.97 16 22 C 0.34 3.68 4.88 36.01 0.18 3.85 16 23 F -0.21 -2.14 16.52 2.25 0.04 -2.10 16 24 F -0.18 -2.57 14.76 2.25 0.03 -2.54 16 25 N -0.30 -6.91 12.42 31.43 0.39 -6.52 16 26 H 0.27 7.57 7.22 -40.82 -0.29 7.28 16 27 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 28 H 0.03 0.90 8.00 -51.93 -0.42 0.49 16 29 H 0.17 2.72 8.06 -52.48 -0.42 2.30 16 30 H 0.16 3.08 5.91 -52.49 -0.31 2.77 16 31 H 0.41 5.06 7.35 -40.82 -0.30 4.76 16 32 H 0.18 1.05 7.05 -52.49 -0.37 0.68 16 33 H 0.18 0.96 7.72 -52.48 -0.41 0.56 16 34 H 0.13 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 321.07 15.07 4.84 4.84 Total: -1.00 -34.07 321.07 -7.11 -41.17 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -2.56 Total: 3.80 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -2.81 Total: -6.13 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: 0.85 Total: -49.26 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: 0.06 Total: -8.40 kcal Atomic # 9 Polarization: -4.71 SS G_CDS: 0.07 Total: -4.64 kcal Atomic # 14 Polarization: 24.85 SS G_CDS: -5.08 Total: 19.76 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -2.48 Total: -1.14 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.07 -7.11 -41.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889045288.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.684 kcal (2) G-P(sol) polarization free energy of solvation -34.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.13 seconds