Wall clock time and date at job start Tue Mar 31 2020 15:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00158 * 2 1 4 4 H 1.48503 * 109.47277 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47342 * 119.99635 * 3 2 1 6 6 H 1.48497 * 109.47467 * 239.99373 * 3 2 1 7 7 C 1.37883 * 119.99885 * 180.27387 * 2 1 3 8 8 H 1.08002 * 119.99786 * 179.73349 * 7 2 1 9 9 C 1.50701 * 119.99686 * 359.72608 * 7 2 1 10 10 N 1.46508 * 109.46838 * 180.02562 * 9 7 2 11 11 C 1.34963 * 125.97304 * 124.71593 * 10 9 7 12 12 C 1.35245 * 107.86198 * 179.84000 * 11 10 9 13 13 C 1.40413 * 107.86593 * 0.42234 * 12 11 10 14 14 N 1.40109 * 125.97532 * 179.70316 * 13 12 11 15 15 C 1.34772 * 120.00133 * 0.02562 * 14 13 12 16 16 O 1.21653 * 119.99902 * 359.97438 * 15 14 13 17 17 C 1.47171 * 120.00262 * 179.97438 * 15 14 13 18 18 C 1.36013 * 123.46090 * 354.11401 * 17 15 14 19 19 S 1.70448 * 110.81642 * 179.97438 * 18 17 15 20 20 C 1.75497 * 92.44462 * 359.97438 * 19 18 17 21 21 C 1.32768 * 110.58041 * 359.71570 * 20 19 18 22 22 C 1.50699 * 123.46185 * 180.27267 * 21 20 19 23 23 F 1.39904 * 109.47121 * 12.75089 * 22 21 20 24 24 F 1.39907 * 109.47309 * 132.75111 * 22 21 20 25 25 N 1.31235 * 108.04972 * 359.74137 * 13 12 11 26 26 H 0.96996 * 119.99840 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47306 * 299.99541 * 9 7 2 28 28 H 1.08994 * 109.46961 * 60.00327 * 9 7 2 29 29 H 1.08003 * 126.06921 * 359.97064 * 11 10 9 30 30 H 1.07998 * 126.06286 * 180.14027 * 12 11 10 31 31 H 0.97001 * 119.99698 * 180.02562 * 14 13 12 32 32 H 1.08000 * 124.59140 * 0.02562 * 18 17 15 33 33 H 1.08004 * 124.70897 * 179.97438 * 20 19 18 34 34 H 1.08994 * 109.47007 * 252.75212 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1030 1.6963 -1.2124 7 6 2.0045 -1.1941 -0.0057 8 1 3.0845 -1.1941 -0.0101 9 6 1.2509 -2.4992 -0.0057 10 7 2.2030 -3.6127 -0.0117 11 6 2.2487 -4.6215 0.8838 12 6 3.2624 -5.4441 0.5306 13 6 3.8667 -4.9134 -0.6204 14 7 4.9603 -5.4620 -1.3033 15 6 5.5265 -6.6029 -0.8627 16 8 5.0883 -7.1562 0.1282 17 6 6.6748 -7.1794 -1.5802 18 6 7.1482 -6.6869 -2.7564 19 16 8.4831 -7.5966 -3.3004 20 6 8.4113 -8.6710 -1.9146 21 6 7.4196 -8.3216 -1.1040 22 6 7.1003 -9.0457 0.1785 23 9 8.1538 -9.9075 0.5021 24 9 6.9258 -8.1151 1.2085 25 7 3.2287 -3.8133 -0.9442 26 1 -0.4850 -0.8400 -0.0004 27 1 0.6280 -2.5591 0.8868 28 1 0.6207 -2.5547 -0.8932 29 1 1.5910 -4.7502 1.7307 30 1 3.5578 -6.3464 1.0454 31 1 5.3099 -5.0206 -2.0931 32 1 6.7349 -5.8345 -3.2748 33 1 9.0834 -9.4988 -1.7428 34 1 6.1846 -9.6230 0.0514 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889045288.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:59 Heat of formation + Delta-G solvation = -38.844139 kcal Electronic energy + Delta-G solvation = -24334.664979 eV Core-core repulsion = 20224.296092 eV Total energy + Delta-G solvation = -4110.368887 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.059 amu Computer time = 3.28 seconds Orbital eigenvalues (eV) -49.90619 -47.90650 -42.34734 -40.90035 -38.24878 -36.46149 -35.59705 -32.95350 -31.51131 -30.99550 -28.49258 -27.88002 -25.85983 -24.89247 -23.20113 -22.31131 -21.24035 -20.21895 -19.46192 -19.20876 -18.46878 -18.32177 -18.08390 -17.64998 -16.92704 -16.79050 -16.49389 -15.85709 -15.62513 -15.25573 -15.06254 -14.85041 -14.33314 -14.32679 -14.28173 -14.04847 -13.89967 -13.82410 -13.69514 -13.53992 -13.23073 -12.69703 -12.61606 -12.04920 -11.95966 -11.85650 -11.68783 -11.02722 -10.99873 -10.70343 -10.23848 -9.87160 -9.58090 -9.20677 -8.78747 -6.57109 -0.42585 0.38064 0.45894 0.70305 1.03713 1.23844 1.50739 1.56953 1.70329 1.78739 2.22931 2.34617 2.48422 2.79076 3.00217 3.37633 3.48711 3.61512 3.89642 3.93533 4.04196 4.11356 4.31859 4.36780 4.54443 4.68499 4.75836 4.80187 4.81679 4.95171 5.09878 5.54034 5.78410 5.90614 6.14188 6.25173 6.40200 6.87570 6.98590 7.18639 8.57452 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.020089 B = 0.002696 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.470287 B =10382.528137 C =11171.679355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.018 4.018 3 Si 1.120 2.880 4 H -0.275 1.275 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.623 4.623 8 H 0.045 0.955 9 C 0.260 3.740 10 N -0.342 5.342 11 C 0.055 3.945 12 C -0.289 4.289 13 C 0.269 3.731 14 N -0.619 5.619 15 C 0.578 3.422 16 O -0.528 6.528 17 C -0.157 4.157 18 C -0.209 4.209 19 S 0.315 5.685 20 C -0.200 4.200 21 C -0.158 4.158 22 C 0.333 3.667 23 F -0.204 7.204 24 F -0.203 7.203 25 N -0.343 5.343 26 H 0.261 0.739 27 H 0.054 0.946 28 H 0.018 0.982 29 H 0.202 0.798 30 H 0.171 0.829 31 H 0.422 0.578 32 H 0.198 0.802 33 H 0.201 0.799 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.774 -19.788 -7.463 28.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.218 4.218 3 Si 0.940 3.060 4 H -0.200 1.200 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.661 4.661 8 H 0.063 0.937 9 C 0.140 3.860 10 N -0.124 5.124 11 C -0.093 4.093 12 C -0.320 4.320 13 C 0.014 3.986 14 N -0.268 5.268 15 C 0.365 3.635 16 O -0.404 6.404 17 C -0.174 4.174 18 C -0.348 4.348 19 S 0.584 5.416 20 C -0.336 4.336 21 C -0.170 4.170 22 C 0.277 3.723 23 F -0.185 7.185 24 F -0.184 7.184 25 N -0.174 5.174 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.036 0.964 29 H 0.219 0.781 30 H 0.188 0.812 31 H 0.260 0.740 32 H 0.215 0.785 33 H 0.218 0.782 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 19.092 -17.419 -8.842 27.315 hybrid contribution -1.047 -1.985 1.707 2.820 sum 18.046 -19.405 -7.135 27.443 Atomic orbital electron populations 1.70945 1.07459 1.30205 1.47298 1.27278 0.96428 1.06063 0.92032 0.82883 0.74150 0.71112 0.77821 1.19959 1.19728 1.19949 1.22295 0.94693 0.92148 1.56941 0.93653 1.19431 0.86396 0.82743 0.97405 1.48577 1.24019 1.20153 1.19670 1.23185 1.00652 0.88776 0.96658 1.21753 1.02070 1.06592 1.01537 1.19365 0.91489 0.93156 0.94546 1.42292 1.28926 1.25055 1.30530 1.17987 0.82586 0.79191 0.83734 1.90746 1.63036 1.60738 1.25891 1.19446 0.99795 1.00123 0.98063 1.26182 1.03198 1.06197 0.99196 1.82992 1.22653 1.17263 1.18740 1.25800 1.01919 1.06572 0.99303 1.20251 0.99371 0.98547 0.98851 1.19978 0.89211 0.81809 0.81296 1.92960 1.61302 1.70651 1.93628 1.93035 1.95805 1.67894 1.61689 1.77261 1.04744 1.17991 1.17414 0.92939 0.92838 0.96438 0.78139 0.81200 0.74001 0.78504 0.78202 0.84682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.02 13.65 21.45 0.29 -53.72 16 2 C -0.02 -1.02 5.46 84.66 0.46 -0.56 16 3 Si 1.12 49.67 29.90 68.60 2.05 51.72 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.62 -35.56 9.24 25.60 0.24 -35.32 16 8 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 9 C 0.26 13.40 5.57 85.63 0.48 13.88 16 10 N -0.34 -16.20 3.67 -351.82 -1.29 -17.49 16 11 C 0.06 2.20 11.43 83.52 0.96 3.16 16 12 C -0.29 -11.39 9.60 22.11 0.21 -11.18 16 13 C 0.27 10.81 8.11 133.34 1.08 11.89 16 14 N -0.62 -18.91 5.42 -310.67 -1.68 -20.59 16 15 C 0.58 16.72 7.63 86.59 0.66 17.38 16 16 O -0.53 -18.09 10.72 -4.20 -0.04 -18.13 16 17 C -0.16 -3.24 5.95 -19.87 -0.12 -3.35 16 18 C -0.21 -2.75 10.37 67.30 0.70 -2.05 16 19 S 0.32 2.43 23.02 -56.49 -1.30 1.13 16 20 C -0.20 -2.35 10.46 66.64 0.70 -1.65 16 21 C -0.16 -2.96 5.76 -19.46 -0.11 -3.07 16 22 C 0.33 7.11 4.88 71.24 0.35 7.46 16 23 F -0.20 -4.07 16.52 44.97 0.74 -3.33 16 24 F -0.20 -6.03 14.76 44.97 0.66 -5.37 16 25 N -0.34 -16.05 12.42 -54.47 -0.68 -16.73 16 26 H 0.26 15.09 7.22 -92.71 -0.67 14.42 16 27 H 0.05 2.65 7.94 -2.39 -0.02 2.63 16 28 H 0.02 0.96 8.00 -2.39 -0.02 0.94 16 29 H 0.20 6.31 8.06 -2.91 -0.02 6.28 16 30 H 0.17 6.47 5.91 -2.91 -0.02 6.45 16 31 H 0.42 10.14 7.35 -92.71 -0.68 9.45 16 32 H 0.20 1.71 7.05 -2.91 -0.02 1.69 16 33 H 0.20 1.44 7.72 -2.91 -0.02 1.42 16 34 H 0.14 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -75.18 321.07 4.96 -70.22 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: 0.61 Total: 15.70 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: 5.60 Total: -3.41 kcal Atomic # 7 Polarization: -105.17 SS G_CDS: -3.36 Total: -108.53 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.04 Total: -18.13 kcal Atomic # 9 Polarization: -10.11 SS G_CDS: 1.41 Total: -8.70 kcal Atomic # 14 Polarization: 49.67 SS G_CDS: 2.05 Total: 51.72 kcal Atomic # 16 Polarization: 2.43 SS G_CDS: -1.30 Total: 1.13 kcal Total: -75.18 4.96 -70.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889045288.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.380 kcal (2) G-P(sol) polarization free energy of solvation -75.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.28 seconds