Wall clock time and date at job start Tue Mar 31 2020 15:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 Br 1.96603 * 115.54719 * 2 1 4 4 C 1.53072 * 117.51489 * 214.28651 * 2 1 3 5 5 C 1.52999 * 117.50500 * 145.67437 * 2 1 3 6 6 H 1.08996 * 117.49393 * 359.97438 * 5 2 1 7 7 C 1.52995 * 117.49991 * 215.00424 * 5 2 1 8 8 N 1.46900 * 109.47385 * 175.47933 * 7 5 2 9 9 C 1.46900 * 110.99760 * 71.74556 * 8 7 5 10 10 C 1.50702 * 109.46715 * 199.52398 * 9 8 7 11 11 H 1.07995 * 120.00396 * 356.63639 * 10 9 8 12 12 C 1.37881 * 119.99698 * 176.63355 * 10 9 8 13 13 N 1.31511 * 119.99877 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 119.99914 * 0.02562 * 12 10 9 15 15 H 1.48496 * 109.47192 * 89.99744 * 14 12 10 16 16 H 1.48508 * 109.46666 * 209.99760 * 14 12 10 17 17 H 1.48499 * 109.47054 * 329.99533 * 14 12 10 18 18 C 1.46900 * 111.00170 * 195.69830 * 8 7 5 19 19 C 1.50705 * 109.47064 * 66.04550 * 18 8 7 20 20 C 1.34514 * 125.78527 * 89.99535 * 19 18 8 21 21 C 1.41390 * 106.83703 * 180.02562 * 20 19 18 22 22 C 1.34505 * 106.84131 * 0.02562 * 21 20 19 23 23 O 1.34298 * 125.79026 * 269.69381 * 19 18 8 24 24 H 1.09003 * 109.46648 * 274.32551 * 1 2 3 25 25 H 1.08989 * 109.47451 * 34.32592 * 1 2 3 26 26 H 1.08997 * 109.46974 * 154.33177 * 1 2 3 27 27 H 1.08999 * 117.51504 * 145.04475 * 4 2 1 28 28 H 1.09000 * 117.49349 * 359.97438 * 4 2 1 29 29 H 1.09003 * 109.47618 * 55.47661 * 7 5 2 30 30 H 1.09005 * 109.47118 * 295.48015 * 7 5 2 31 31 H 1.08998 * 109.47454 * 319.52128 * 9 8 7 32 32 H 1.08993 * 109.47188 * 79.52384 * 9 8 7 33 33 H 0.97001 * 119.99855 * 180.02562 * 13 12 10 34 34 H 1.08996 * 109.46957 * 186.04078 * 18 8 7 35 35 H 1.08999 * 109.47115 * 306.04874 * 18 8 7 36 36 H 1.07994 * 126.58306 * 0.04048 * 20 19 18 37 37 H 1.07998 * 126.57752 * 179.97438 * 21 20 19 38 38 H 1.08004 * 125.79211 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 35 2.3779 1.7738 0.0000 4 6 2.2372 -1.1217 -0.7648 5 6 2.2366 -1.1207 0.7652 6 1 1.6114 -1.8578 1.2691 7 6 3.5488 -0.7753 1.4720 8 7 4.0157 -1.9406 2.2349 9 6 4.5087 -2.9940 1.3376 10 6 4.5248 -4.3109 2.0702 11 1 4.2531 -4.3512 3.1146 12 6 4.8864 -5.4644 1.4069 13 7 4.9009 -6.6135 2.0463 14 14 5.3569 -5.3946 -0.3995 15 1 6.8185 -5.1620 -0.5217 16 1 5.0040 -6.6806 -1.0529 17 1 4.6223 -4.2858 -1.0599 18 6 5.0454 -1.5542 3.2088 19 6 4.4348 -0.6604 4.2574 20 6 3.8728 -1.0692 5.4091 21 6 3.4329 0.0922 6.0850 22 6 3.7518 1.1410 5.3056 23 8 4.3646 0.6797 4.2030 24 1 -0.3633 0.0775 1.0248 25 1 -0.3634 0.8486 -0.5794 26 1 -0.3633 -0.9262 -0.4451 27 1 3.1725 -0.8762 -1.2678 28 1 1.6121 -1.8597 -1.2674 29 1 3.3866 0.0621 2.1508 30 1 4.2997 -0.5017 0.7307 31 1 3.8529 -3.0688 0.4702 32 1 5.5187 -2.7485 1.0094 33 1 5.1556 -7.4249 1.5798 34 1 5.4497 -2.4479 3.6839 35 1 5.8465 -1.0201 2.6979 36 1 3.7764 -2.0887 5.7518 37 1 2.9354 0.1298 7.0428 38 1 3.5543 2.1786 5.5310 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891464948.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:51 Heat of formation + Delta-G solvation = 48.349715 kcal Electronic energy + Delta-G solvation = -20277.524109 eV Core-core repulsion = 17169.092698 eV Total energy + Delta-G solvation = -3108.431411 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.19533 -38.47499 -36.20084 -32.68093 -32.51780 -30.52237 -29.85452 -29.11481 -27.75416 -26.10224 -23.76613 -21.45623 -21.22582 -20.61055 -19.78611 -19.42283 -17.03130 -16.85398 -15.91945 -15.33012 -14.97207 -14.57289 -14.17350 -13.80313 -13.74088 -13.27753 -12.95391 -12.50432 -12.43624 -12.36636 -12.20482 -11.95777 -11.70252 -11.50131 -11.36717 -11.14517 -10.81058 -10.63439 -10.51849 -10.02897 -9.84603 -9.61945 -9.51227 -9.39564 -9.30065 -8.61047 -8.12614 -7.51939 -6.08484 -4.06006 1.67712 2.07155 2.98396 3.25023 3.33039 3.34113 3.35234 3.58048 4.37290 4.39232 4.72358 4.80172 4.99023 5.14658 5.25206 5.35849 5.39547 5.54867 5.60277 5.63536 5.67491 5.80225 5.84880 5.97490 6.01758 6.08133 6.12484 6.20658 6.35308 6.45316 6.49738 6.78427 6.81084 6.87616 7.50617 7.56749 7.79201 7.88788 8.60234 9.00986 9.53028 11.04529 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.010006 B = 0.005917 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2797.730280 B = 4730.647290 C = 6854.200777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.101 4.101 3 Br -0.127 7.127 4 C -0.154 4.154 5 C -0.099 4.099 6 H 0.128 0.872 7 C 0.078 3.922 8 N -0.518 5.518 9 C 0.161 3.839 10 C -0.509 4.509 11 H 0.082 0.918 12 C 0.070 3.930 13 N -0.899 5.899 14 Si 0.870 3.130 15 H -0.278 1.278 16 H -0.286 1.286 17 H -0.265 1.265 18 C 0.140 3.860 19 C 0.008 3.992 20 C -0.197 4.197 21 C -0.213 4.213 22 C -0.057 4.057 23 O -0.181 6.181 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.101 0.899 28 H 0.106 0.894 29 H 0.080 0.920 30 H 0.032 0.968 31 H 0.037 0.963 32 H -0.013 1.013 33 H 0.264 0.736 34 H 0.118 0.882 35 H 0.039 0.961 36 H 0.148 0.852 37 H 0.142 0.858 38 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.273 17.118 -1.626 18.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.179 4.179 3 Br -0.045 7.045 4 C -0.192 4.192 5 C -0.119 4.119 6 H 0.146 0.854 7 C -0.051 4.051 8 N -0.242 5.242 9 C 0.035 3.965 10 C -0.547 4.547 11 H 0.100 0.900 12 C -0.131 4.131 13 N -0.538 5.538 14 Si 0.698 3.302 15 H -0.203 1.203 16 H -0.212 1.212 17 H -0.190 1.190 18 C 0.012 3.988 19 C -0.043 4.043 20 C -0.217 4.217 21 C -0.232 4.232 22 C -0.125 4.125 23 O -0.077 6.077 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.120 0.880 28 H 0.124 0.876 29 H 0.099 0.901 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.004 0.996 33 H 0.073 0.927 34 H 0.136 0.864 35 H 0.057 0.943 36 H 0.166 0.834 37 H 0.160 0.840 38 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -6.222 17.508 -1.646 18.654 hybrid contribution 0.619 -0.157 -1.204 1.363 sum -5.603 17.351 -2.850 18.455 Atomic orbital electron populations 1.21448 0.89304 1.02842 1.02992 1.25084 0.96029 0.84853 1.11892 1.97287 1.82614 1.25532 1.99117 1.23584 1.02122 0.97736 0.95804 1.22709 0.98859 0.97029 0.93282 0.85377 1.21787 0.93186 0.93887 0.96226 1.61947 1.36976 1.08194 1.17120 1.20277 0.93203 0.90481 0.92517 1.21027 1.45210 0.89228 0.99235 0.90020 1.24874 0.95212 0.95378 0.97681 1.69887 1.48687 0.98617 1.36562 0.86940 0.79236 0.77743 0.86330 1.20343 1.21170 1.19017 1.20558 0.91645 0.95764 0.90818 1.22656 1.03259 0.80050 0.98296 1.21593 1.04401 0.99965 0.95774 1.21792 1.06793 0.92601 1.02052 1.23841 1.02080 0.99548 0.87010 1.84028 1.61718 1.22324 1.39614 0.91258 0.91499 0.90978 0.88028 0.87558 0.90144 0.94943 0.94484 0.99560 0.92654 0.86396 0.94334 0.83382 0.84022 0.78893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 9.92 37.16 0.37 -0.79 16 2 C -0.10 -1.33 3.10 -90.58 -0.28 -1.61 16 3 Br -0.13 -1.69 32.67 -68.01 -2.22 -3.91 16 4 C -0.15 -2.16 9.44 -26.69 -0.25 -2.41 16 5 C -0.10 -1.55 4.69 -90.62 -0.42 -1.98 16 6 H 0.13 2.14 8.14 -51.93 -0.42 1.72 16 7 C 0.08 1.35 4.06 -3.83 -0.02 1.33 16 8 N -0.52 -10.36 4.37 -237.52 -1.04 -11.40 16 9 C 0.16 3.67 3.67 -4.97 -0.02 3.65 16 10 C -0.51 -13.72 9.15 -34.44 -0.31 -14.04 16 11 H 0.08 2.40 7.93 -52.49 -0.42 1.99 16 12 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 13 N -0.90 -26.72 13.96 55.43 0.77 -25.95 16 14 Si 0.87 20.74 27.54 -169.99 -4.68 16.06 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.27 -6.02 6.45 56.52 0.36 -5.65 16 18 C 0.14 2.60 5.32 -4.97 -0.03 2.57 16 19 C 0.01 0.13 5.91 -35.62 -0.21 -0.08 16 20 C -0.20 -3.25 10.81 -39.70 -0.43 -3.68 16 21 C -0.21 -2.97 10.91 -39.70 -0.43 -3.40 16 22 C -0.06 -0.76 12.09 29.41 0.36 -0.40 16 23 O -0.18 -2.92 9.68 5.70 0.06 -2.87 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.07 0.65 8.13 -51.94 -0.42 0.23 16 26 H 0.07 0.71 7.90 -51.93 -0.41 0.30 16 27 H 0.10 1.45 8.03 -51.93 -0.42 1.03 16 28 H 0.11 1.35 8.05 -51.93 -0.42 0.93 16 29 H 0.08 1.40 5.94 -51.93 -0.31 1.09 16 30 H 0.03 0.57 7.79 -51.93 -0.40 0.17 16 31 H 0.04 0.85 5.76 -51.93 -0.30 0.55 16 32 H -0.01 -0.31 7.60 -51.93 -0.39 -0.70 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.12 2.33 7.33 -51.93 -0.38 1.95 16 35 H 0.04 0.68 8.12 -51.93 -0.42 0.26 16 36 H 0.15 2.42 8.06 -52.49 -0.42 1.99 16 37 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.19 1.77 8.06 -52.48 -0.42 1.35 16 LS Contribution 334.76 15.07 5.04 5.04 Total: -1.00 -29.40 334.76 -9.43 -38.82 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -5.58 Total: 3.18 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: -1.78 Total: -18.97 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: -0.27 Total: -37.35 kcal Atomic # 8 Polarization: -2.92 SS G_CDS: 0.06 Total: -2.87 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.68 Total: 16.06 kcal Atomic # 35 Polarization: -1.69 SS G_CDS: -2.22 Total: -3.91 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.40 -9.43 -38.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891464948.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.172 kcal (2) G-P(sol) polarization free energy of solvation -29.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds