Wall clock time and date at job start Tue Mar 31 2020 15:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 Br 1.96603 * 115.54719 * 2 1 4 4 C 1.53072 * 117.51489 * 214.28651 * 2 1 3 5 5 C 1.52999 * 117.50500 * 145.67437 * 2 1 3 6 6 H 1.08996 * 117.49393 * 359.97438 * 5 2 1 7 7 C 1.52995 * 117.49991 * 215.00424 * 5 2 1 8 8 N 1.46900 * 109.47385 * 175.47933 * 7 5 2 9 9 C 1.46900 * 110.99760 * 71.74556 * 8 7 5 10 10 C 1.50702 * 109.46715 * 199.52398 * 9 8 7 11 11 H 1.07995 * 120.00396 * 356.63639 * 10 9 8 12 12 C 1.37881 * 119.99698 * 176.63355 * 10 9 8 13 13 N 1.31511 * 119.99877 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 119.99914 * 0.02562 * 12 10 9 15 15 H 1.48496 * 109.47192 * 89.99744 * 14 12 10 16 16 H 1.48508 * 109.46666 * 209.99760 * 14 12 10 17 17 H 1.48499 * 109.47054 * 329.99533 * 14 12 10 18 18 C 1.46900 * 111.00170 * 195.69830 * 8 7 5 19 19 C 1.50705 * 109.47064 * 66.04550 * 18 8 7 20 20 C 1.34514 * 125.78527 * 89.99535 * 19 18 8 21 21 C 1.41390 * 106.83703 * 180.02562 * 20 19 18 22 22 C 1.34505 * 106.84131 * 0.02562 * 21 20 19 23 23 O 1.34298 * 125.79026 * 269.69381 * 19 18 8 24 24 H 1.09003 * 109.46648 * 274.32551 * 1 2 3 25 25 H 1.08989 * 109.47451 * 34.32592 * 1 2 3 26 26 H 1.08997 * 109.46974 * 154.33177 * 1 2 3 27 27 H 1.08999 * 117.51504 * 145.04475 * 4 2 1 28 28 H 1.09000 * 117.49349 * 359.97438 * 4 2 1 29 29 H 1.09003 * 109.47618 * 55.47661 * 7 5 2 30 30 H 1.09005 * 109.47118 * 295.48015 * 7 5 2 31 31 H 1.08998 * 109.47454 * 319.52128 * 9 8 7 32 32 H 1.08993 * 109.47188 * 79.52384 * 9 8 7 33 33 H 0.97001 * 119.99855 * 180.02562 * 13 12 10 34 34 H 1.08996 * 109.46957 * 186.04078 * 18 8 7 35 35 H 1.08999 * 109.47115 * 306.04874 * 18 8 7 36 36 H 1.07994 * 126.58306 * 0.04048 * 20 19 18 37 37 H 1.07998 * 126.57752 * 179.97438 * 21 20 19 38 38 H 1.08004 * 125.79211 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 35 2.3779 1.7738 0.0000 4 6 2.2372 -1.1217 -0.7648 5 6 2.2366 -1.1207 0.7652 6 1 1.6114 -1.8578 1.2691 7 6 3.5488 -0.7753 1.4720 8 7 4.0157 -1.9406 2.2349 9 6 4.5087 -2.9940 1.3376 10 6 4.5248 -4.3109 2.0702 11 1 4.2531 -4.3512 3.1146 12 6 4.8864 -5.4644 1.4069 13 7 4.9009 -6.6135 2.0463 14 14 5.3569 -5.3946 -0.3995 15 1 6.8185 -5.1620 -0.5217 16 1 5.0040 -6.6806 -1.0529 17 1 4.6223 -4.2858 -1.0599 18 6 5.0454 -1.5542 3.2088 19 6 4.4348 -0.6604 4.2574 20 6 3.8728 -1.0692 5.4091 21 6 3.4329 0.0922 6.0850 22 6 3.7518 1.1410 5.3056 23 8 4.3646 0.6797 4.2030 24 1 -0.3633 0.0775 1.0248 25 1 -0.3634 0.8486 -0.5794 26 1 -0.3633 -0.9262 -0.4451 27 1 3.1725 -0.8762 -1.2678 28 1 1.6121 -1.8597 -1.2674 29 1 3.3866 0.0621 2.1508 30 1 4.2997 -0.5017 0.7307 31 1 3.8529 -3.0688 0.4702 32 1 5.5187 -2.7485 1.0094 33 1 5.1556 -7.4249 1.5798 34 1 5.4497 -2.4479 3.6839 35 1 5.8465 -1.0201 2.6979 36 1 3.7764 -2.0887 5.7518 37 1 2.9354 0.1298 7.0428 38 1 3.5543 2.1786 5.5310 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891464948.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:50 Heat of formation + Delta-G solvation = 31.685489 kcal Electronic energy + Delta-G solvation = -20278.246725 eV Core-core repulsion = 17169.092698 eV Total energy + Delta-G solvation = -3109.154026 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.41158 -39.74735 -37.64032 -34.65604 -33.84703 -31.82093 -31.07034 -30.40813 -29.19922 -27.39711 -25.43260 -22.86240 -22.59544 -21.87874 -21.10082 -20.59485 -18.94717 -18.21419 -17.29814 -16.65829 -16.36996 -16.16873 -15.42625 -15.23998 -15.22996 -14.45239 -14.30306 -14.21737 -13.67843 -13.65230 -13.55984 -13.30577 -13.07988 -12.93675 -12.64883 -12.46570 -12.39306 -12.15257 -11.87037 -11.74085 -11.44121 -11.14274 -10.78814 -10.76484 -10.66581 -10.40587 -9.37695 -9.09544 -8.24179 -6.26852 0.62184 0.85720 1.37207 1.38395 1.48559 1.78209 2.14489 2.37048 2.44829 3.07021 3.12734 3.58803 3.72839 3.75149 3.87439 4.16545 4.22335 4.32123 4.40757 4.50376 4.59968 4.67747 4.73127 4.78446 4.81096 4.82227 4.93325 4.97898 5.02239 5.14629 5.16481 5.20543 5.28719 5.57187 5.68735 5.97681 6.21268 6.33073 6.61766 6.79531 7.36234 8.92278 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.010006 B = 0.005917 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2797.730280 B = 4730.647290 C = 6854.200777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.084 4.084 3 Br -0.127 7.127 4 C -0.152 4.152 5 C -0.124 4.124 6 H 0.114 0.886 7 C 0.088 3.912 8 N -0.531 5.531 9 C 0.174 3.826 10 C -0.510 4.510 11 H 0.039 0.961 12 C 0.012 3.988 13 N -0.947 5.947 14 Si 0.937 3.063 15 H -0.271 1.271 16 H -0.284 1.284 17 H -0.242 1.242 18 C 0.143 3.857 19 C -0.014 4.014 20 C -0.209 4.209 21 C -0.222 4.222 22 C -0.041 4.041 23 O -0.190 6.190 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.100 0.900 28 H 0.122 0.878 29 H 0.080 0.920 30 H 0.031 0.969 31 H 0.043 0.957 32 H -0.012 1.012 33 H 0.265 0.735 34 H 0.093 0.907 35 H 0.045 0.955 36 H 0.137 0.863 37 H 0.169 0.831 38 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.146 19.540 -2.951 21.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.161 4.161 3 Br -0.046 7.046 4 C -0.190 4.190 5 C -0.144 4.144 6 H 0.132 0.868 7 C -0.040 4.040 8 N -0.255 5.255 9 C 0.048 3.952 10 C -0.548 4.548 11 H 0.058 0.942 12 C -0.185 4.185 13 N -0.588 5.588 14 Si 0.761 3.239 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.166 1.166 18 C 0.016 3.984 19 C -0.064 4.064 20 C -0.230 4.230 21 C -0.241 4.241 22 C -0.108 4.108 23 O -0.087 6.087 24 H 0.089 0.911 25 H 0.099 0.901 26 H 0.102 0.898 27 H 0.118 0.882 28 H 0.140 0.860 29 H 0.098 0.902 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.006 0.994 33 H 0.074 0.926 34 H 0.111 0.889 35 H 0.063 0.937 36 H 0.155 0.845 37 H 0.187 0.813 38 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -7.103 19.961 -2.963 21.393 hybrid contribution 0.858 -0.845 -0.626 1.358 sum -6.245 19.115 -3.590 20.427 Atomic orbital electron populations 1.21512 0.87330 1.04107 1.03545 1.25172 0.97223 0.84250 1.09460 1.97298 1.82862 1.25362 1.99063 1.23679 1.02554 0.98451 0.94308 1.22575 0.98423 0.98937 0.94421 0.86786 1.21712 0.93867 0.92583 0.95860 1.61839 1.37317 1.09116 1.17215 1.19994 0.93342 0.89418 0.92481 1.21224 1.44305 0.91512 0.97762 0.94233 1.25753 0.95230 0.94785 1.02768 1.70044 1.50440 0.99554 1.38802 0.85860 0.79305 0.78455 0.80279 1.19673 1.20956 1.16559 1.20347 0.91769 0.95331 0.90962 1.22261 1.05091 0.80739 0.98344 1.21761 1.04416 1.00622 0.96157 1.22090 1.07214 0.91487 1.03288 1.24762 0.99433 1.01325 0.85253 1.84012 1.62291 1.21421 1.40949 0.91095 0.90119 0.89813 0.88188 0.86028 0.90177 0.95077 0.93910 0.99438 0.92563 0.88872 0.93679 0.84474 0.81307 0.74375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.02 9.92 71.98 0.71 -1.31 16 2 C -0.08 -2.02 3.10 -10.77 -0.03 -2.05 16 3 Br -0.13 -3.12 32.67 -20.37 -0.67 -3.78 16 4 C -0.15 -3.91 9.44 30.62 0.29 -3.62 16 5 C -0.12 -3.74 4.69 -10.80 -0.05 -3.79 16 6 H 0.11 3.78 8.14 -2.39 -0.02 3.77 16 7 C 0.09 2.99 4.06 86.30 0.35 3.34 16 8 N -0.53 -21.61 4.37 -905.37 -3.96 -25.57 16 9 C 0.17 8.00 3.67 85.56 0.31 8.31 16 10 C -0.51 -28.48 9.15 25.60 0.23 -28.25 16 11 H 0.04 2.48 7.93 -2.91 -0.02 2.46 16 12 C 0.01 0.68 5.47 84.66 0.46 1.14 16 13 N -0.95 -58.20 13.96 21.45 0.30 -57.90 16 14 Si 0.94 42.64 27.54 68.60 1.89 44.53 16 15 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 16 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 17 H -0.24 -10.03 6.45 99.48 0.64 -9.39 16 18 C 0.14 5.53 5.32 85.56 0.46 5.99 16 19 C -0.01 -0.50 5.91 24.83 0.15 -0.35 16 20 C -0.21 -6.99 10.81 22.19 0.24 -6.75 16 21 C -0.22 -5.77 10.91 22.19 0.24 -5.53 16 22 C -0.04 -0.97 12.09 66.97 0.81 -0.16 16 23 O -0.19 -5.89 9.68 -2.50 -0.02 -5.92 16 24 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.08 1.32 8.13 -2.39 -0.02 1.30 16 26 H 0.08 1.41 7.90 -2.39 -0.02 1.39 16 27 H 0.10 2.62 8.03 -2.39 -0.02 2.60 16 28 H 0.12 2.75 8.05 -2.39 -0.02 2.73 16 29 H 0.08 2.73 5.94 -2.39 -0.01 2.71 16 30 H 0.03 1.06 7.79 -2.38 -0.02 1.05 16 31 H 0.04 1.92 5.76 -2.39 -0.01 1.91 16 32 H -0.01 -0.55 7.60 -2.39 -0.02 -0.57 16 33 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 34 H 0.09 3.97 7.33 -2.39 -0.02 3.96 16 35 H 0.05 1.64 8.12 -2.39 -0.02 1.62 16 36 H 0.14 4.76 8.06 -2.91 -0.02 4.73 16 37 H 0.17 3.36 8.06 -2.91 -0.02 3.34 16 38 H 0.24 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -65.12 334.76 2.69 -62.43 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 0.97 Total: 19.25 kcal Atomic # 6 Polarization: -37.20 SS G_CDS: 4.17 Total: -33.03 kcal Atomic # 7 Polarization: -79.82 SS G_CDS: -3.66 Total: -83.48 kcal Atomic # 8 Polarization: -5.89 SS G_CDS: -0.02 Total: -5.92 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 1.89 Total: 44.53 kcal Atomic # 35 Polarization: -3.12 SS G_CDS: -0.67 Total: -3.78 kcal Total: -65.12 2.69 -62.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891464948.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.116 kcal (2) G-P(sol) polarization free energy of solvation -65.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds