Wall clock time and date at job start Tue Mar 31 2020 15:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 Br 1.96599 * 115.55117 * 2 1 4 4 C 1.53009 * 117.49649 * 145.70113 * 2 1 3 5 5 C 1.52996 * 117.50108 * 214.32305 * 2 1 3 6 6 H 1.09004 * 117.50072 * 145.00336 * 5 2 1 7 7 C 1.53000 * 117.50010 * 0.02562 * 5 2 1 8 8 N 1.46898 * 109.47193 * 176.22041 * 7 5 2 9 9 C 1.46903 * 110.99943 * 75.72964 * 8 7 5 10 10 C 1.50695 * 109.47306 * 189.99707 * 9 8 7 11 11 H 1.08000 * 119.99907 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00165 * 180.02562 * 10 9 8 13 13 N 1.31519 * 119.99693 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00369 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47083 * 180.02562 * 14 12 10 16 16 H 1.48506 * 109.46731 * 299.99799 * 14 12 10 17 17 H 1.48495 * 109.47169 * 59.99424 * 14 12 10 18 18 C 1.46906 * 111.00130 * 199.68409 * 8 7 5 19 19 C 1.50691 * 109.46960 * 71.15788 * 18 8 7 20 20 C 1.34518 * 125.78785 * 87.21195 * 19 18 8 21 21 C 1.41387 * 106.84052 * 179.88776 * 20 19 18 22 22 C 1.34514 * 106.83967 * 0.37129 * 21 20 19 23 23 O 1.34304 * 108.42139 * 359.77165 * 22 21 20 24 24 H 1.08996 * 109.47235 * 205.67275 * 1 2 3 25 25 H 1.08995 * 109.47548 * 325.67264 * 1 2 3 26 26 H 1.09002 * 109.46554 * 85.67710 * 1 2 3 27 27 H 1.08991 * 117.49708 * 0.02562 * 4 2 1 28 28 H 1.09002 * 117.49388 * 214.98315 * 4 2 1 29 29 H 1.09002 * 109.46988 * 56.22505 * 7 5 2 30 30 H 1.08995 * 109.47148 * 296.22580 * 7 5 2 31 31 H 1.09002 * 109.46607 * 69.99854 * 9 8 7 32 32 H 1.08995 * 109.46943 * 310.00586 * 9 8 7 33 33 H 0.97001 * 119.99618 * 180.02562 * 13 12 10 34 34 H 1.08998 * 109.46953 * 191.16273 * 18 8 7 35 35 H 1.09006 * 109.46701 * 311.16077 * 18 8 7 36 36 H 1.08002 * 126.57997 * 0.02562 * 20 19 18 37 37 H 1.08004 * 126.57909 * 180.16291 * 21 20 19 38 38 H 1.07999 * 125.78673 * 179.79651 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 35 2.3779 1.7737 0.0000 4 6 2.2364 -1.1212 0.7648 5 6 2.2365 -1.1208 -0.7652 6 1 3.1714 -0.8748 -1.2687 7 6 1.3589 -2.1555 -1.4724 8 7 2.2101 -3.0900 -2.2208 9 6 2.8614 -4.0479 -1.3173 10 6 3.9055 -4.8248 -2.0769 11 1 4.0694 -4.6265 -3.1259 12 6 4.6518 -5.7889 -1.4329 13 7 4.4519 -6.0307 -0.1557 14 14 5.9466 -6.7514 -2.3742 15 1 6.6039 -7.7207 -1.4612 16 1 5.3020 -7.4849 -3.4931 17 1 6.9627 -5.8144 -2.9170 18 6 1.4403 -3.7863 -3.2603 19 6 1.1005 -2.8202 -4.3657 20 6 1.8747 -2.5370 -5.4286 21 6 1.1716 -1.5885 -6.2065 22 6 0.0134 -1.3427 -5.5681 23 8 -0.0243 -2.0915 -4.4538 24 1 -0.3633 -0.9262 0.4452 25 1 -0.3634 0.8486 0.5795 26 1 -0.3632 0.0775 -1.0248 27 1 1.6112 -1.8590 1.2675 28 1 3.1715 -0.8754 1.2682 29 1 0.6829 -1.6487 -2.1611 30 1 0.7782 -2.7060 -0.7323 31 1 2.1156 -4.7356 -0.9183 32 1 3.3347 -3.5092 -0.4966 33 1 4.9771 -6.7086 0.2976 34 1 2.0341 -4.6063 -3.6642 35 1 0.5211 -4.1818 -2.8280 36 1 2.8460 -2.9556 -5.6472 37 1 1.5026 -1.1439 -7.1334 38 1 -0.7559 -0.6594 -5.8962 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891464956.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:57 Heat of formation + Delta-G solvation = 42.593617 kcal Electronic energy + Delta-G solvation = -20184.413885 eV Core-core repulsion = 17075.732871 eV Total energy + Delta-G solvation = -3108.681014 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.17953 -38.45349 -36.07504 -32.70513 -32.54903 -30.42323 -29.74643 -28.53501 -27.64665 -26.07265 -23.94072 -21.49412 -21.34701 -20.81246 -19.85803 -18.77296 -17.02480 -16.49947 -15.79690 -15.63332 -14.73187 -14.68509 -14.06241 -13.95890 -13.57337 -13.17142 -12.85117 -12.51939 -12.40355 -12.31000 -11.97300 -11.82224 -11.50103 -11.34810 -11.21191 -10.91488 -10.78338 -10.68354 -10.62472 -10.14048 -9.96608 -9.57837 -9.44032 -9.37852 -9.15563 -8.49477 -8.09659 -7.42268 -6.08412 -4.10395 1.73482 2.08555 2.99416 3.30427 3.35313 3.36077 3.38047 3.68800 4.37585 4.58894 4.74452 4.90383 5.04332 5.23072 5.28661 5.36564 5.40627 5.61083 5.69015 5.70071 5.76680 5.87603 5.96373 6.00226 6.08867 6.14200 6.16966 6.24965 6.36429 6.52642 6.54882 6.87911 7.15362 7.22706 7.53723 7.72058 7.96129 8.07503 8.42879 8.96534 9.54402 11.02086 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.009719 B = 0.004892 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2880.160252 B = 5722.299793 C = 7739.914069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.101 4.101 3 Br -0.132 7.132 4 C -0.148 4.148 5 C -0.095 4.095 6 H 0.123 0.877 7 C 0.083 3.917 8 N -0.528 5.528 9 C 0.195 3.805 10 C -0.514 4.514 11 H 0.064 0.936 12 C 0.059 3.941 13 N -0.896 5.896 14 Si 0.896 3.104 15 H -0.288 1.288 16 H -0.277 1.277 17 H -0.276 1.276 18 C 0.138 3.862 19 C 0.012 3.988 20 C -0.201 4.201 21 C -0.212 4.212 22 C -0.060 4.060 23 O -0.183 6.183 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.070 0.930 30 H 0.033 0.967 31 H -0.007 1.007 32 H 0.040 0.960 33 H 0.262 0.738 34 H 0.119 0.881 35 H 0.038 0.962 36 H 0.147 0.853 37 H 0.141 0.859 38 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.010 12.860 -2.457 15.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.178 4.178 3 Br -0.050 7.050 4 C -0.186 4.186 5 C -0.115 4.115 6 H 0.141 0.859 7 C -0.046 4.046 8 N -0.253 5.253 9 C 0.071 3.929 10 C -0.552 4.552 11 H 0.082 0.918 12 C -0.143 4.143 13 N -0.535 5.535 14 Si 0.724 3.276 15 H -0.214 1.214 16 H -0.202 1.202 17 H -0.201 1.201 18 C 0.011 3.989 19 C -0.039 4.039 20 C -0.221 4.221 21 C -0.232 4.232 22 C -0.128 4.128 23 O -0.079 6.079 24 H 0.090 0.910 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.124 0.876 28 H 0.122 0.878 29 H 0.088 0.912 30 H 0.051 0.949 31 H 0.010 0.990 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.136 0.864 35 H 0.056 0.944 36 H 0.165 0.835 37 H 0.159 0.841 38 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -8.518 13.609 -2.302 16.219 hybrid contribution 0.199 -1.140 -0.224 1.179 sum -8.318 12.469 -2.526 15.200 Atomic orbital electron populations 1.21432 0.89616 1.02766 1.02843 1.25007 0.95941 0.84609 1.12272 1.97287 1.82471 1.26097 1.99183 1.23533 1.02001 0.97379 0.95670 1.22708 1.00712 0.94611 0.93477 0.85932 1.21645 0.93528 0.93294 0.96084 1.62021 1.28569 1.20262 1.14473 1.19787 0.93081 0.88755 0.91304 1.21114 1.18925 1.18363 0.96817 0.91816 1.24958 0.97337 0.97099 0.94894 1.69940 1.41011 1.33335 1.09216 0.86590 0.81779 0.79676 0.79573 1.21370 1.20225 1.20134 1.20552 0.96913 0.92268 0.89195 1.22812 0.84973 0.97111 0.98981 1.21561 1.01764 1.02392 0.96358 1.21792 0.96087 1.02770 1.02513 1.23823 1.01002 1.00058 0.87882 1.84005 1.39057 1.45469 1.39397 0.91031 0.91575 0.91378 0.87639 0.87799 0.91170 0.94875 0.98963 0.94182 0.92805 0.86362 0.94422 0.83542 0.84095 0.78900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 8.93 37.16 0.33 -0.93 16 2 C -0.10 -1.39 3.11 -90.62 -0.28 -1.67 16 3 Br -0.13 -1.80 33.94 -68.01 -2.31 -4.11 16 4 C -0.15 -2.18 9.64 -26.73 -0.26 -2.43 16 5 C -0.10 -1.55 5.01 -90.62 -0.45 -2.00 16 6 H 0.12 2.23 8.14 -51.93 -0.42 1.81 16 7 C 0.08 1.43 4.17 -3.82 -0.02 1.42 16 8 N -0.53 -10.65 4.38 -237.52 -1.04 -11.69 16 9 C 0.20 4.70 4.55 -4.98 -0.02 4.68 16 10 C -0.51 -13.56 8.30 -34.44 -0.29 -13.84 16 11 H 0.06 1.66 7.24 -52.49 -0.38 1.28 16 12 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 13 N -0.90 -25.51 13.29 55.43 0.74 -24.77 16 14 Si 0.90 20.92 29.54 -169.99 -5.02 15.89 16 15 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 C 0.14 2.58 5.34 -4.98 -0.03 2.55 16 19 C 0.01 0.20 6.05 -35.63 -0.22 -0.02 16 20 C -0.20 -3.30 10.81 -39.70 -0.43 -3.72 16 21 C -0.21 -2.95 10.91 -39.70 -0.43 -3.39 16 22 C -0.06 -0.79 12.09 29.42 0.36 -0.43 16 23 O -0.18 -2.91 9.88 5.70 0.06 -2.85 16 24 H 0.07 0.79 7.90 -51.93 -0.41 0.38 16 25 H 0.07 0.70 8.13 -51.93 -0.42 0.27 16 26 H 0.07 0.79 7.87 -51.93 -0.41 0.38 16 27 H 0.11 1.50 7.94 -51.93 -0.41 1.09 16 28 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 29 H 0.07 1.17 6.18 -51.93 -0.32 0.85 16 30 H 0.03 0.57 7.74 -51.93 -0.40 0.16 16 31 H -0.01 -0.19 8.12 -51.93 -0.42 -0.61 16 32 H 0.04 1.03 7.44 -51.93 -0.39 0.65 16 33 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.12 2.34 6.59 -51.93 -0.34 1.99 16 35 H 0.04 0.67 8.06 -51.93 -0.42 0.25 16 36 H 0.15 2.36 8.06 -52.49 -0.42 1.94 16 37 H 0.14 1.60 8.06 -52.48 -0.42 1.18 16 38 H 0.19 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 338.69 15.07 5.10 5.10 Total: -1.00 -28.27 338.69 -9.88 -38.15 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -5.57 Total: 2.57 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: -1.83 Total: -18.29 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: -0.30 Total: -36.46 kcal Atomic # 8 Polarization: -2.91 SS G_CDS: 0.06 Total: -2.85 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 35 Polarization: -1.80 SS G_CDS: -2.31 Total: -4.11 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.27 -9.88 -38.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891464956.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.739 kcal (2) G-P(sol) polarization free energy of solvation -28.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds