Wall clock time and date at job start Tue Mar 31 2020 15:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 Br 1.96599 * 115.55117 * 2 1 4 4 C 1.53009 * 117.49649 * 145.70113 * 2 1 3 5 5 C 1.52996 * 117.50108 * 214.32305 * 2 1 3 6 6 H 1.09004 * 117.50072 * 145.00336 * 5 2 1 7 7 C 1.53000 * 117.50010 * 0.02562 * 5 2 1 8 8 N 1.46898 * 109.47193 * 176.22041 * 7 5 2 9 9 C 1.46903 * 110.99943 * 75.72964 * 8 7 5 10 10 C 1.50695 * 109.47306 * 189.99707 * 9 8 7 11 11 H 1.08000 * 119.99907 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00165 * 180.02562 * 10 9 8 13 13 N 1.31519 * 119.99693 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00369 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47083 * 180.02562 * 14 12 10 16 16 H 1.48506 * 109.46731 * 299.99799 * 14 12 10 17 17 H 1.48495 * 109.47169 * 59.99424 * 14 12 10 18 18 C 1.46906 * 111.00130 * 199.68409 * 8 7 5 19 19 C 1.50691 * 109.46960 * 71.15788 * 18 8 7 20 20 C 1.34518 * 125.78785 * 87.21195 * 19 18 8 21 21 C 1.41387 * 106.84052 * 179.88776 * 20 19 18 22 22 C 1.34514 * 106.83967 * 0.37129 * 21 20 19 23 23 O 1.34304 * 108.42139 * 359.77165 * 22 21 20 24 24 H 1.08996 * 109.47235 * 205.67275 * 1 2 3 25 25 H 1.08995 * 109.47548 * 325.67264 * 1 2 3 26 26 H 1.09002 * 109.46554 * 85.67710 * 1 2 3 27 27 H 1.08991 * 117.49708 * 0.02562 * 4 2 1 28 28 H 1.09002 * 117.49388 * 214.98315 * 4 2 1 29 29 H 1.09002 * 109.46988 * 56.22505 * 7 5 2 30 30 H 1.08995 * 109.47148 * 296.22580 * 7 5 2 31 31 H 1.09002 * 109.46607 * 69.99854 * 9 8 7 32 32 H 1.08995 * 109.46943 * 310.00586 * 9 8 7 33 33 H 0.97001 * 119.99618 * 180.02562 * 13 12 10 34 34 H 1.08998 * 109.46953 * 191.16273 * 18 8 7 35 35 H 1.09006 * 109.46701 * 311.16077 * 18 8 7 36 36 H 1.08002 * 126.57997 * 0.02562 * 20 19 18 37 37 H 1.08004 * 126.57909 * 180.16291 * 21 20 19 38 38 H 1.07999 * 125.78673 * 179.79651 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 35 2.3779 1.7737 0.0000 4 6 2.2364 -1.1212 0.7648 5 6 2.2365 -1.1208 -0.7652 6 1 3.1714 -0.8748 -1.2687 7 6 1.3589 -2.1555 -1.4724 8 7 2.2101 -3.0900 -2.2208 9 6 2.8614 -4.0479 -1.3173 10 6 3.9055 -4.8248 -2.0769 11 1 4.0694 -4.6265 -3.1259 12 6 4.6518 -5.7889 -1.4329 13 7 4.4519 -6.0307 -0.1557 14 14 5.9466 -6.7514 -2.3742 15 1 6.6039 -7.7207 -1.4612 16 1 5.3020 -7.4849 -3.4931 17 1 6.9627 -5.8144 -2.9170 18 6 1.4403 -3.7863 -3.2603 19 6 1.1005 -2.8202 -4.3657 20 6 1.8747 -2.5370 -5.4286 21 6 1.1716 -1.5885 -6.2065 22 6 0.0134 -1.3427 -5.5681 23 8 -0.0243 -2.0915 -4.4538 24 1 -0.3633 -0.9262 0.4452 25 1 -0.3634 0.8486 0.5795 26 1 -0.3632 0.0775 -1.0248 27 1 1.6112 -1.8590 1.2675 28 1 3.1715 -0.8754 1.2682 29 1 0.6829 -1.6487 -2.1611 30 1 0.7782 -2.7060 -0.7323 31 1 2.1156 -4.7356 -0.9183 32 1 3.3347 -3.5092 -0.4966 33 1 4.9771 -6.7086 0.2976 34 1 2.0341 -4.6063 -3.6642 35 1 0.5211 -4.1818 -2.8280 36 1 2.8460 -2.9556 -5.6472 37 1 1.5026 -1.1439 -7.1334 38 1 -0.7559 -0.6594 -5.8962 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891464956.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:56 Heat of formation + Delta-G solvation = 27.829711 kcal Electronic energy + Delta-G solvation = -20185.054096 eV Core-core repulsion = 17075.732871 eV Total energy + Delta-G solvation = -3109.321225 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.36660 -39.78199 -37.58558 -34.66663 -33.80255 -31.68787 -31.01820 -29.67366 -29.29171 -27.47020 -25.68459 -23.04379 -22.58219 -22.11484 -21.13907 -20.02047 -18.53285 -18.17323 -17.20339 -16.94754 -16.46815 -15.98952 -15.51371 -15.39834 -14.94181 -14.35848 -14.28086 -13.91916 -13.64315 -13.59812 -13.46707 -13.15383 -13.00298 -12.83057 -12.63957 -12.55167 -12.49534 -12.28965 -11.91265 -11.77117 -11.33624 -11.21791 -10.74465 -10.67444 -10.54683 -10.39968 -9.32257 -9.06597 -8.17234 -6.25837 0.59323 0.90088 1.43760 1.45497 1.53039 1.81683 2.18317 2.41843 2.47523 3.16404 3.24161 3.55296 3.73603 3.77999 3.92947 4.20537 4.25678 4.33132 4.43280 4.55259 4.60773 4.72092 4.75103 4.77483 4.79232 4.86021 5.00886 5.12422 5.15981 5.17916 5.24163 5.29063 5.35570 5.67648 5.72779 6.06807 6.25668 6.33671 6.59353 6.88952 7.43343 8.93174 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.009719 B = 0.004892 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2880.160252 B = 5722.299793 C = 7739.914069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.079 4.079 3 Br -0.127 7.127 4 C -0.151 4.151 5 C -0.115 4.115 6 H 0.099 0.901 7 C 0.092 3.908 8 N -0.535 5.535 9 C 0.214 3.786 10 C -0.524 4.524 11 H 0.063 0.937 12 C 0.009 3.991 13 N -0.930 5.930 14 Si 0.960 3.040 15 H -0.285 1.285 16 H -0.267 1.267 17 H -0.272 1.272 18 C 0.143 3.857 19 C -0.012 4.012 20 C -0.210 4.210 21 C -0.224 4.224 22 C -0.043 4.043 23 O -0.192 6.192 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.110 0.890 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.033 0.967 31 H -0.033 1.033 32 H 0.018 0.982 33 H 0.263 0.737 34 H 0.099 0.901 35 H 0.040 0.960 36 H 0.140 0.860 37 H 0.168 0.832 38 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.019 14.193 -3.730 17.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.156 4.156 3 Br -0.046 7.046 4 C -0.189 4.189 5 C -0.135 4.135 6 H 0.118 0.882 7 C -0.036 4.036 8 N -0.260 5.260 9 C 0.089 3.911 10 C -0.563 4.563 11 H 0.081 0.919 12 C -0.190 4.190 13 N -0.570 5.570 14 Si 0.785 3.215 15 H -0.211 1.211 16 H -0.192 1.192 17 H -0.197 1.197 18 C 0.016 3.984 19 C -0.062 4.062 20 C -0.230 4.230 21 C -0.243 4.243 22 C -0.109 4.109 23 O -0.089 6.089 24 H 0.097 0.903 25 H 0.101 0.899 26 H 0.091 0.909 27 H 0.129 0.871 28 H 0.119 0.881 29 H 0.098 0.902 30 H 0.052 0.948 31 H -0.015 1.015 32 H 0.036 0.964 33 H 0.072 0.928 34 H 0.117 0.883 35 H 0.059 0.941 36 H 0.158 0.842 37 H 0.186 0.814 38 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -9.535 14.955 -3.592 18.096 hybrid contribution 0.468 -1.464 0.116 1.541 sum -9.067 13.491 -3.475 16.622 Atomic orbital electron populations 1.21501 0.87614 1.03916 1.03551 1.25057 0.97099 0.84116 1.09357 1.97298 1.82739 1.25438 1.99118 1.23560 1.02372 0.98325 0.94614 1.22520 1.00368 0.96393 0.94205 0.88240 1.21593 0.93290 0.92725 0.95980 1.61932 1.30161 1.19582 1.14304 1.19371 0.92186 0.88469 0.91090 1.21432 1.19309 1.18591 0.96929 0.91930 1.25767 0.99387 0.98129 0.95696 1.70058 1.42165 1.34087 1.10683 0.85579 0.79177 0.78299 0.78448 1.21086 1.19210 1.19729 1.20335 0.96358 0.92451 0.89286 1.22353 0.86258 0.98527 0.99080 1.21763 1.01655 1.02878 0.96734 1.22102 0.96177 1.02470 1.03528 1.24761 1.01503 0.98642 0.86038 1.83988 1.38385 1.45760 1.40718 0.90336 0.89929 0.90928 0.87132 0.88074 0.90232 0.94835 1.01494 0.96351 0.92778 0.88263 0.94148 0.84195 0.81444 0.74334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.29 8.93 71.98 0.64 -1.65 16 2 C -0.08 -2.08 3.11 -10.79 -0.03 -2.12 16 3 Br -0.13 -3.32 33.94 -20.37 -0.69 -4.01 16 4 C -0.15 -4.45 9.64 30.60 0.30 -4.15 16 5 C -0.11 -3.77 5.01 -10.79 -0.05 -3.82 16 6 H 0.10 3.74 8.14 -2.39 -0.02 3.72 16 7 C 0.09 3.20 4.17 86.30 0.36 3.56 16 8 N -0.54 -22.23 4.38 -905.38 -3.96 -26.20 16 9 C 0.21 10.78 4.55 85.55 0.39 11.17 16 10 C -0.52 -28.46 8.30 25.60 0.21 -28.24 16 11 H 0.06 3.34 7.24 -2.91 -0.02 3.32 16 12 C 0.01 0.49 5.46 84.65 0.46 0.95 16 13 N -0.93 -54.15 13.29 21.45 0.28 -53.87 16 14 Si 0.96 43.32 29.54 68.60 2.03 45.34 16 15 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 16 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 17 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 18 C 0.14 5.48 5.34 85.55 0.46 5.93 16 19 C -0.01 -0.41 6.05 24.83 0.15 -0.26 16 20 C -0.21 -6.76 10.81 22.19 0.24 -6.52 16 21 C -0.22 -5.64 10.91 22.19 0.24 -5.40 16 22 C -0.04 -0.97 12.09 66.97 0.81 -0.16 16 23 O -0.19 -5.74 9.88 -2.50 -0.02 -5.76 16 24 H 0.08 1.58 7.90 -2.39 -0.02 1.56 16 25 H 0.08 1.51 8.13 -2.39 -0.02 1.49 16 26 H 0.07 1.51 7.87 -2.39 -0.02 1.49 16 27 H 0.11 3.14 7.94 -2.39 -0.02 3.12 16 28 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 29 H 0.08 2.59 6.18 -2.39 -0.01 2.58 16 30 H 0.03 1.16 7.74 -2.39 -0.02 1.14 16 31 H -0.03 -1.77 8.12 -2.39 -0.02 -1.79 16 32 H 0.02 1.00 7.44 -2.39 -0.02 0.98 16 33 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 34 H 0.10 4.10 6.59 -2.39 -0.02 4.09 16 35 H 0.04 1.48 8.06 -2.38 -0.02 1.47 16 36 H 0.14 4.56 8.06 -2.91 -0.02 4.54 16 37 H 0.17 3.23 8.06 -2.91 -0.02 3.20 16 38 H 0.24 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -61.54 338.69 2.84 -58.70 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: 1.04 Total: 16.50 kcal Atomic # 6 Polarization: -34.88 SS G_CDS: 4.17 Total: -30.71 kcal Atomic # 7 Polarization: -76.38 SS G_CDS: -3.68 Total: -80.06 kcal Atomic # 8 Polarization: -5.74 SS G_CDS: -0.02 Total: -5.76 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 35 Polarization: -3.32 SS G_CDS: -0.69 Total: -4.01 kcal Total: -61.54 2.84 -58.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891464956.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.530 kcal (2) G-P(sol) polarization free energy of solvation -61.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds