Wall clock time and date at job start Tue Mar 31 2020 15:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 120.00212 * 2 1 4 4 H 1.48503 * 109.46742 * 94.53535 * 3 2 1 5 5 H 1.48500 * 109.47460 * 214.53151 * 3 2 1 6 6 H 1.48499 * 109.46928 * 334.53536 * 3 2 1 7 7 C 1.37886 * 120.00030 * 180.28070 * 2 1 3 8 8 H 1.08002 * 119.99771 * 6.61783 * 7 2 1 9 9 C 1.50698 * 120.00006 * 186.61954 * 7 2 1 10 10 H 1.08995 * 109.47523 * 326.94485 * 9 7 2 11 11 C 1.52999 * 109.47080 * 206.93845 * 9 7 2 12 12 C 1.50700 * 109.47010 * 65.00685 * 11 9 7 13 13 O 1.21282 * 120.00069 * 359.97438 * 12 11 9 14 14 N 1.34777 * 120.00194 * 180.02562 * 12 11 9 15 15 C 1.46505 * 119.99960 * 180.02562 * 14 12 11 16 16 C 1.50695 * 109.46988 * 179.97438 * 15 14 12 17 17 C 1.31329 * 120.00405 * 124.99541 * 16 15 14 18 18 Cl 1.73601 * 119.99677 * 0.02562 * 17 16 15 19 19 Cl 1.73602 * 120.00310 * 179.97438 * 17 16 15 20 20 C 1.50706 * 109.46664 * 86.94374 * 9 7 2 21 21 C 1.38233 * 119.99857 * 57.92474 * 20 9 7 22 22 C 1.38240 * 119.99757 * 179.78388 * 21 20 9 23 23 C 1.38239 * 119.99979 * 0.44453 * 22 21 20 24 24 C 1.38242 * 120.00017 * 359.80708 * 23 22 21 25 25 C 1.38230 * 119.99928 * 238.19148 * 20 9 7 26 26 H 0.96994 * 119.99996 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47081 * 185.00338 * 11 9 7 28 28 H 1.09000 * 109.47450 * 305.00596 * 11 9 7 29 29 H 0.96995 * 119.99984 * 359.97438 * 14 12 11 30 30 H 1.09000 * 109.46885 * 299.99228 * 15 14 12 31 31 H 1.09000 * 109.47350 * 59.99305 * 15 14 12 32 32 H 1.08007 * 120.00046 * 304.99319 * 16 15 14 33 33 H 1.07994 * 120.00554 * 359.97438 * 21 20 9 34 34 H 1.07996 * 120.00426 * 180.26872 * 22 21 20 35 35 H 1.08000 * 120.00114 * 179.82966 * 23 22 21 36 36 H 1.07993 * 120.00100 * 180.02562 * 24 23 22 37 37 H 1.07999 * 120.00162 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5925 1.9909 1.3957 5 1 3.4955 1.4697 -0.7936 6 1 1.4019 2.6784 -0.6020 7 6 2.0045 -1.1941 -0.0059 8 1 1.4699 -2.1258 -0.1182 9 6 3.5040 -1.1992 0.1446 10 1 3.9190 -0.3058 -0.3219 11 6 4.0803 -2.4435 -0.5339 12 6 3.8289 -2.3685 -2.0179 13 8 3.2457 -1.4140 -2.4866 14 7 4.2513 -3.3625 -2.8241 15 6 4.0073 -3.2893 -4.2668 16 6 4.5749 -4.5149 -4.9351 17 6 3.8068 -5.2664 -5.6901 18 17 2.1377 -4.8474 -5.9188 19 17 4.4609 -6.6779 -6.4605 20 6 3.8618 -1.2140 1.6084 21 6 3.4059 -2.2350 2.4211 22 6 3.7379 -2.2510 3.7630 23 6 4.5181 -1.2409 4.2940 24 6 4.9697 -0.2170 3.4823 25 6 4.6413 -0.2035 2.1396 26 1 -0.4850 0.8400 0.0004 27 1 5.1534 -2.4938 -0.3493 28 1 3.5998 -3.3339 -0.1285 29 1 4.7174 -4.1261 -2.4492 30 1 2.9343 -3.2383 -4.4517 31 1 4.4885 -2.3991 -4.6720 32 1 5.6134 -4.7753 -4.7931 33 1 2.7930 -3.0219 2.0072 34 1 3.3854 -3.0509 4.3970 35 1 4.7752 -1.2518 5.3429 36 1 5.5796 0.5719 3.8971 37 1 4.9943 0.5963 1.5055 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898307192.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:14 Heat of formation + Delta-G solvation = -10.697719 kcal Electronic energy + Delta-G solvation = -22343.568689 eV Core-core repulsion = 18751.880545 eV Total energy + Delta-G solvation = -3591.688144 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.32872 -38.44465 -37.72216 -36.83571 -35.37073 -34.03960 -32.36967 -31.62866 -30.21600 -29.11262 -26.77212 -25.08414 -22.57161 -21.85917 -20.81774 -20.28333 -19.16205 -17.30420 -16.95493 -16.63251 -15.94936 -15.52208 -15.09044 -14.54596 -14.52556 -14.14092 -13.85891 -13.71434 -13.08126 -12.88981 -12.71147 -12.57681 -12.32823 -12.23658 -11.86739 -11.81448 -11.73162 -11.52937 -11.22178 -11.04877 -10.80273 -10.51161 -10.36086 -9.90811 -9.62073 -9.54382 -9.15958 -8.95048 -8.68201 -8.44360 -8.21656 -7.82616 -5.98562 -3.94538 1.01804 1.11213 2.08675 2.10369 2.14523 3.39835 3.41381 3.46762 3.49876 3.66237 4.51805 4.56694 4.64284 5.03788 5.15021 5.29523 5.51056 5.55062 5.55830 5.67845 5.70235 5.90114 5.92943 5.98117 6.06641 6.23231 6.32082 6.56575 6.68605 6.71816 6.81885 7.03462 7.13708 7.25602 7.58422 7.71043 7.81925 7.92295 8.52842 8.91785 9.01139 9.65728 11.14572 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.015518 B = 0.003065 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.958162 B = 9133.489491 C =10147.414020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.084 3.916 3 Si 0.867 3.133 4 H -0.275 1.275 5 H -0.261 1.261 6 H -0.292 1.292 7 C -0.483 4.483 8 H 0.072 0.928 9 C 0.048 3.952 10 H 0.054 0.946 11 C -0.114 4.114 12 C 0.514 3.486 13 O -0.497 6.497 14 N -0.745 5.745 15 C 0.142 3.858 16 C -0.126 4.126 17 C -0.034 4.034 18 Cl -0.026 7.026 19 Cl -0.041 7.041 20 C -0.039 4.039 21 C -0.101 4.101 22 C -0.126 4.126 23 C -0.149 4.149 24 C -0.124 4.124 25 C -0.139 4.139 26 H 0.262 0.738 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.396 0.604 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.150 0.850 33 H 0.120 0.880 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.424 -11.451 -6.510 18.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.118 4.118 3 Si 0.695 3.305 4 H -0.200 1.200 5 H -0.186 1.186 6 H -0.218 1.218 7 C -0.520 4.520 8 H 0.090 0.910 9 C 0.028 3.972 10 H 0.072 0.928 11 C -0.154 4.154 12 C 0.301 3.699 13 O -0.368 6.368 14 N -0.401 5.401 15 C 0.019 3.981 16 C -0.146 4.146 17 C -0.088 4.088 18 Cl 0.002 6.998 19 Cl -0.013 7.013 20 C -0.040 4.040 21 C -0.119 4.119 22 C -0.145 4.145 23 C -0.168 4.168 24 C -0.143 4.143 25 C -0.157 4.157 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.104 0.896 29 H 0.229 0.771 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.167 0.833 33 H 0.138 0.862 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 11.694 -10.665 -6.953 17.287 hybrid contribution 0.430 0.441 0.068 0.620 sum 12.124 -10.225 -6.885 17.290 Atomic orbital electron populations 1.69885 1.06335 1.26829 1.50563 1.24864 0.94480 0.98747 0.93725 0.86967 0.80793 0.84224 0.78507 1.20040 1.18589 1.21819 1.20597 0.87801 0.94591 1.49039 0.91028 1.18248 0.98094 0.94092 0.86720 0.92809 1.21619 1.00566 1.02465 0.90763 1.20878 0.78029 0.81759 0.89207 1.90757 1.37674 1.32102 1.76241 1.46084 1.62893 1.25153 1.06003 1.20406 1.02013 0.94073 0.81652 1.23346 1.00042 0.95614 0.95639 1.24177 0.88022 0.93467 1.03109 1.98455 1.14299 1.91249 1.95756 1.98425 1.83572 1.38677 1.80622 1.20766 0.91578 0.92649 0.98997 1.20954 0.98802 0.99215 0.92912 1.21062 0.99128 0.98649 0.95616 1.20863 1.01050 0.96021 0.98832 1.20957 1.00840 0.98344 0.94113 1.21059 1.00117 0.99331 0.95211 0.92829 0.91140 0.89609 0.77105 0.89599 0.89696 0.83257 0.86215 0.87156 0.87400 0.87351 0.87382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.98 13.96 55.43 0.77 -27.21 16 2 C 0.08 2.46 5.47 -17.82 -0.10 2.36 16 3 Si 0.87 22.58 26.62 -169.99 -4.52 18.06 16 4 H -0.27 -6.97 7.11 56.52 0.40 -6.56 16 5 H -0.26 -6.61 6.29 56.52 0.36 -6.25 16 6 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 7 C -0.48 -13.15 6.97 -34.44 -0.24 -13.39 16 8 H 0.07 2.11 8.06 -52.49 -0.42 1.69 16 9 C 0.05 1.07 1.21 -92.92 -0.11 0.96 16 10 H 0.05 1.30 4.88 -51.93 -0.25 1.05 16 11 C -0.11 -2.02 4.93 -27.88 -0.14 -2.16 16 12 C 0.51 9.54 7.58 -10.99 -0.08 9.45 16 13 O -0.50 -11.80 14.98 5.56 0.08 -11.71 16 14 N -0.75 -9.96 5.55 -61.47 -0.34 -10.30 16 15 C 0.14 1.76 5.97 -5.19 -0.03 1.73 16 16 C -0.13 -1.13 9.36 -36.11 -0.34 -1.47 16 17 C -0.03 -0.33 6.97 28.93 0.20 -0.13 16 18 Cl -0.03 -0.29 26.92 -51.86 -1.40 -1.69 16 19 Cl -0.04 -0.36 29.06 -51.86 -1.51 -1.86 16 20 C -0.04 -0.81 4.52 -104.62 -0.47 -1.28 16 21 C -0.10 -1.93 8.86 -39.58 -0.35 -2.28 16 22 C -0.13 -2.13 10.05 -39.58 -0.40 -2.53 16 23 C -0.15 -2.42 10.05 -39.58 -0.40 -2.82 16 24 C -0.12 -2.13 10.05 -39.58 -0.40 -2.53 16 25 C -0.14 -2.72 9.08 -39.58 -0.36 -3.08 16 26 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.09 1.42 7.69 -51.93 -0.40 1.02 16 29 H 0.40 3.92 8.46 -40.82 -0.35 3.57 16 30 H 0.09 1.24 6.01 -51.93 -0.31 0.93 16 31 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.15 0.98 8.06 -52.48 -0.42 0.56 16 33 H 0.12 2.25 7.72 -52.49 -0.41 1.85 16 34 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 35 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 36 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 37 H 0.11 2.06 7.91 -52.49 -0.42 1.64 16 LS Contribution 346.20 15.07 5.22 5.22 Total: -1.00 -33.30 346.20 -9.18 -42.48 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -4.27 Total: 4.19 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: -3.21 Total: -17.18 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: 0.43 Total: -37.51 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.08 Total: -11.71 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.52 Total: 18.06 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -2.90 Total: -3.55 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.30 -9.18 -42.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898307192.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.785 kcal (2) G-P(sol) polarization free energy of solvation -33.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds