Wall clock time and date at job start Tue Mar 31 2020 15:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 120.00212 * 2 1 4 4 H 1.48503 * 109.46742 * 94.53535 * 3 2 1 5 5 H 1.48500 * 109.47460 * 214.53151 * 3 2 1 6 6 H 1.48499 * 109.46928 * 334.53536 * 3 2 1 7 7 C 1.37886 * 120.00030 * 180.28070 * 2 1 3 8 8 H 1.08002 * 119.99771 * 6.61783 * 7 2 1 9 9 C 1.50698 * 120.00006 * 186.61954 * 7 2 1 10 10 H 1.08995 * 109.47523 * 326.94485 * 9 7 2 11 11 C 1.52999 * 109.47080 * 206.93845 * 9 7 2 12 12 C 1.50700 * 109.47010 * 65.00685 * 11 9 7 13 13 O 1.21282 * 120.00069 * 359.97438 * 12 11 9 14 14 N 1.34777 * 120.00194 * 180.02562 * 12 11 9 15 15 C 1.46505 * 119.99960 * 180.02562 * 14 12 11 16 16 C 1.50695 * 109.46988 * 179.97438 * 15 14 12 17 17 C 1.31329 * 120.00405 * 124.99541 * 16 15 14 18 18 Cl 1.73601 * 119.99677 * 0.02562 * 17 16 15 19 19 Cl 1.73602 * 120.00310 * 179.97438 * 17 16 15 20 20 C 1.50706 * 109.46664 * 86.94374 * 9 7 2 21 21 C 1.38233 * 119.99857 * 57.92474 * 20 9 7 22 22 C 1.38240 * 119.99757 * 179.78388 * 21 20 9 23 23 C 1.38239 * 119.99979 * 0.44453 * 22 21 20 24 24 C 1.38242 * 120.00017 * 359.80708 * 23 22 21 25 25 C 1.38230 * 119.99928 * 238.19148 * 20 9 7 26 26 H 0.96994 * 119.99996 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47081 * 185.00338 * 11 9 7 28 28 H 1.09000 * 109.47450 * 305.00596 * 11 9 7 29 29 H 0.96995 * 119.99984 * 359.97438 * 14 12 11 30 30 H 1.09000 * 109.46885 * 299.99228 * 15 14 12 31 31 H 1.09000 * 109.47350 * 59.99305 * 15 14 12 32 32 H 1.08007 * 120.00046 * 304.99319 * 16 15 14 33 33 H 1.07994 * 120.00554 * 359.97438 * 21 20 9 34 34 H 1.07996 * 120.00426 * 180.26872 * 22 21 20 35 35 H 1.08000 * 120.00114 * 179.82966 * 23 22 21 36 36 H 1.07993 * 120.00100 * 180.02562 * 24 23 22 37 37 H 1.07999 * 120.00162 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5925 1.9909 1.3957 5 1 3.4955 1.4697 -0.7936 6 1 1.4019 2.6784 -0.6020 7 6 2.0045 -1.1941 -0.0059 8 1 1.4699 -2.1258 -0.1182 9 6 3.5040 -1.1992 0.1446 10 1 3.9190 -0.3058 -0.3219 11 6 4.0803 -2.4435 -0.5339 12 6 3.8289 -2.3685 -2.0179 13 8 3.2457 -1.4140 -2.4866 14 7 4.2513 -3.3625 -2.8241 15 6 4.0073 -3.2893 -4.2668 16 6 4.5749 -4.5149 -4.9351 17 6 3.8068 -5.2664 -5.6901 18 17 2.1377 -4.8474 -5.9188 19 17 4.4609 -6.6779 -6.4605 20 6 3.8618 -1.2140 1.6084 21 6 3.4059 -2.2350 2.4211 22 6 3.7379 -2.2510 3.7630 23 6 4.5181 -1.2409 4.2940 24 6 4.9697 -0.2170 3.4823 25 6 4.6413 -0.2035 2.1396 26 1 -0.4850 0.8400 0.0004 27 1 5.1534 -2.4938 -0.3493 28 1 3.5998 -3.3339 -0.1285 29 1 4.7174 -4.1261 -2.4492 30 1 2.9343 -3.2383 -4.4517 31 1 4.4885 -2.3991 -4.6720 32 1 5.6134 -4.7753 -4.7931 33 1 2.7930 -3.0219 2.0072 34 1 3.3854 -3.0509 4.3970 35 1 4.7752 -1.2518 5.3429 36 1 5.5796 0.5719 3.8971 37 1 4.9943 0.5963 1.5055 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898307192.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:13 Heat of formation + Delta-G solvation = -31.690809 kcal Electronic energy + Delta-G solvation = -22344.479018 eV Core-core repulsion = 18751.880545 eV Total energy + Delta-G solvation = -3592.598473 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.78582 -39.82629 -38.59007 -37.62956 -36.55490 -35.72420 -33.78206 -33.33668 -31.59320 -30.49507 -28.32193 -26.55105 -24.17157 -23.25947 -21.82137 -21.59406 -20.66380 -19.01798 -18.28312 -17.96061 -17.22203 -16.77907 -16.53025 -16.02251 -15.91554 -15.47685 -15.37231 -14.86520 -14.62010 -14.40198 -14.19520 -13.97164 -13.82663 -13.47231 -13.29124 -13.12341 -12.81389 -12.73843 -12.54001 -12.28666 -12.07538 -12.05254 -11.88011 -11.77703 -11.47003 -11.02339 -10.75649 -10.63211 -10.22340 -9.89011 -9.61161 -9.29316 -8.21582 -6.16775 0.23426 0.31855 0.69175 0.74617 1.29811 1.30393 1.34679 1.42311 1.93393 2.40314 2.46584 3.08710 3.23908 3.78680 4.10229 4.12917 4.15923 4.31357 4.32689 4.39852 4.46484 4.52483 4.67468 4.71360 4.86320 4.88911 4.95045 5.10910 5.24210 5.40330 5.41848 5.52674 5.71184 5.77799 5.83209 6.04056 6.34791 6.36917 6.73583 6.82189 7.45491 7.54189 8.95734 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.015518 B = 0.003065 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.958162 B = 9133.489491 C =10147.414020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.022 3.978 3 Si 0.918 3.082 4 H -0.261 1.261 5 H -0.254 1.254 6 H -0.300 1.300 7 C -0.459 4.459 8 H 0.035 0.965 9 C 0.048 3.952 10 H 0.035 0.965 11 C -0.111 4.111 12 C 0.511 3.489 13 O -0.560 6.560 14 N -0.722 5.722 15 C 0.140 3.860 16 C -0.108 4.108 17 C -0.038 4.038 18 Cl -0.048 7.048 19 Cl -0.025 7.025 20 C -0.062 4.062 21 C -0.118 4.118 22 C -0.125 4.125 23 C -0.141 4.141 24 C -0.125 4.125 25 C -0.157 4.157 26 H 0.258 0.742 27 H 0.110 0.890 28 H 0.098 0.902 29 H 0.416 0.584 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.185 0.815 33 H 0.112 0.888 34 H 0.140 0.860 35 H 0.146 0.854 36 H 0.139 0.861 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.701 -12.628 -4.889 20.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.174 4.174 3 Si 0.745 3.255 4 H -0.186 1.186 5 H -0.178 1.178 6 H -0.227 1.227 7 C -0.497 4.497 8 H 0.053 0.947 9 C 0.029 3.971 10 H 0.053 0.947 11 C -0.150 4.150 12 C 0.299 3.701 13 O -0.436 6.436 14 N -0.377 5.377 15 C 0.016 3.984 16 C -0.128 4.128 17 C -0.092 4.092 18 Cl -0.021 7.021 19 Cl 0.003 6.997 20 C -0.063 4.063 21 C -0.136 4.136 22 C -0.142 4.142 23 C -0.159 4.159 24 C -0.143 4.143 25 C -0.175 4.175 26 H 0.067 0.933 27 H 0.128 0.872 28 H 0.116 0.884 29 H 0.254 0.746 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.202 0.798 33 H 0.130 0.870 34 H 0.158 0.842 35 H 0.164 0.836 36 H 0.157 0.843 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 15.039 -11.911 -5.329 19.911 hybrid contribution -0.483 0.629 -0.405 0.891 sum 14.556 -11.282 -5.734 19.288 Atomic orbital electron populations 1.70030 1.07935 1.27130 1.54400 1.25579 0.95027 1.02038 0.94773 0.86151 0.79671 0.80645 0.79082 1.18617 1.17848 1.22702 1.20834 0.90503 0.92557 1.45840 0.94665 1.18117 0.94658 0.95488 0.88831 0.94682 1.21565 1.02842 1.00670 0.89971 1.21064 0.77313 0.81783 0.89930 1.90738 1.40805 1.34779 1.77275 1.45773 1.61298 1.24382 1.06290 1.20394 1.01038 0.95975 0.81022 1.23300 1.01205 0.93674 0.94669 1.24239 0.87089 0.94234 1.03635 1.98457 1.16216 1.91490 1.95887 1.98433 1.83137 1.37724 1.80387 1.20503 0.93895 0.94326 0.97552 1.21021 0.99300 0.99017 0.94244 1.21414 0.98422 0.99648 0.94760 1.21338 0.99276 0.94706 1.00560 1.21332 1.00514 0.99344 0.93067 1.21200 1.00718 0.98948 0.96665 0.93311 0.87196 0.88408 0.74641 0.91895 0.89748 0.79838 0.86961 0.84235 0.83617 0.84323 0.87570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.34 13.96 21.45 0.30 -62.04 16 2 C 0.02 1.33 5.47 84.66 0.46 1.79 16 3 Si 0.92 48.01 26.62 68.60 1.83 49.83 16 4 H -0.26 -12.90 7.11 99.48 0.71 -12.19 16 5 H -0.25 -12.81 6.29 99.48 0.63 -12.19 16 6 H -0.30 -15.88 7.11 99.48 0.71 -15.17 16 7 C -0.46 -25.94 6.97 25.60 0.18 -25.76 16 8 H 0.04 2.19 8.06 -2.91 -0.02 2.16 16 9 C 0.05 2.18 1.21 -12.29 -0.01 2.16 16 10 H 0.04 1.71 4.88 -2.39 -0.01 1.70 16 11 C -0.11 -3.83 4.93 29.85 0.15 -3.69 16 12 C 0.51 18.93 7.58 87.66 0.66 19.60 16 13 O -0.56 -27.47 14.98 -3.03 -0.05 -27.51 16 14 N -0.72 -18.36 5.55 -466.78 -2.59 -20.95 16 15 C 0.14 3.35 5.97 85.63 0.51 3.86 16 16 C -0.11 -1.72 9.36 25.32 0.24 -1.48 16 17 C -0.04 -0.68 6.97 67.46 0.47 -0.21 16 18 Cl -0.05 -1.11 26.92 -2.72 -0.07 -1.19 16 19 Cl -0.03 -0.39 29.06 -2.72 -0.08 -0.47 16 20 C -0.06 -2.51 4.52 -19.87 -0.09 -2.60 16 21 C -0.12 -4.35 8.86 22.27 0.20 -4.15 16 22 C -0.12 -3.78 10.05 22.27 0.22 -3.56 16 23 C -0.14 -3.92 10.05 22.27 0.22 -3.70 16 24 C -0.12 -3.80 10.05 22.27 0.22 -3.58 16 25 C -0.16 -5.82 9.08 22.27 0.20 -5.62 16 26 H 0.26 16.13 8.31 -92.71 -0.77 15.35 16 27 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 28 H 0.10 3.14 7.69 -2.39 -0.02 3.13 16 29 H 0.42 7.12 8.46 -92.71 -0.78 6.34 16 30 H 0.06 1.87 6.01 -2.39 -0.01 1.85 16 31 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.18 1.68 8.06 -2.91 -0.02 1.66 16 33 H 0.11 4.20 7.72 -2.91 -0.02 4.18 16 34 H 0.14 3.37 8.06 -2.91 -0.02 3.34 16 35 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 36 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 37 H 0.11 3.88 7.91 -2.91 -0.02 3.86 16 Total: -1.00 -77.18 346.20 3.21 -73.96 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 0.24 Total: 15.29 kcal Atomic # 6 Polarization: -30.57 SS G_CDS: 3.64 Total: -26.94 kcal Atomic # 7 Polarization: -80.69 SS G_CDS: -2.29 Total: -82.98 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -0.05 Total: -27.51 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 1.83 Total: 49.83 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -0.15 Total: -1.65 kcal Total: -77.18 3.21 -73.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898307192.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.274 kcal (2) G-P(sol) polarization free energy of solvation -77.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds