Wall clock time and date at job start Tue Mar 31 2020 14:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86804 * 120.00441 * 2 1 4 4 H 1.48499 * 109.47220 * 240.00082 * 3 2 1 5 5 H 1.48496 * 109.46764 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47263 * 119.99686 * 3 2 1 7 7 C 1.38954 * 119.99949 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00623 * 198.20729 * 7 2 1 9 9 N 1.37102 * 119.99310 * 18.20970 * 7 2 1 10 10 C 1.34771 * 120.00646 * 44.28898 * 9 7 2 11 11 O 1.21296 * 119.99798 * 359.97438 * 10 9 7 12 12 C 1.50694 * 120.00217 * 179.97438 * 10 9 7 13 13 S 1.81403 * 109.47004 * 179.97438 * 12 10 9 14 14 O 1.42095 * 109.47056 * 289.05447 * 13 12 10 15 15 C 1.76208 * 102.99836 * 180.02562 * 13 12 10 16 16 C 1.38234 * 119.98667 * 90.00382 * 15 13 12 17 17 C 1.38217 * 120.01432 * 179.97438 * 16 15 13 18 18 C 1.38354 * 119.98622 * 359.97438 * 17 16 15 19 19 Cl 1.73596 * 120.01281 * 180.02562 * 18 17 16 20 20 C 1.38354 * 119.97143 * 0.27945 * 18 17 16 21 21 C 1.38212 * 119.98721 * 359.46358 * 20 18 17 22 22 C 1.46502 * 119.99662 * 224.28616 * 9 7 2 23 23 C 1.53007 * 117.49734 * 3.22445 * 22 9 7 24 24 C 1.53000 * 60.00080 * 252.51183 * 23 22 9 25 25 H 0.97001 * 119.99462 * 354.92491 * 1 2 3 26 26 H 1.09002 * 109.47368 * 60.00343 * 12 10 9 27 27 H 1.08998 * 109.47352 * 299.99903 * 12 10 9 28 28 H 1.07999 * 119.99349 * 359.97355 * 16 15 13 29 29 H 1.07994 * 120.00548 * 179.97438 * 17 16 15 30 30 H 1.07995 * 120.00490 * 179.69950 * 20 18 17 31 31 H 1.07998 * 119.99797 * 180.26203 * 21 20 18 32 32 H 1.08998 * 115.55526 * 148.93528 * 22 9 7 33 33 H 1.08993 * 117.50072 * 0.02562 * 23 22 9 34 34 H 1.09007 * 117.49592 * 145.02308 * 23 22 9 35 35 H 1.09005 * 117.49691 * 252.51057 * 24 23 22 36 36 H 1.08995 * 117.51650 * 107.48167 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6963 -1.2125 5 1 1.2833 2.7464 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0482 -1.2268 0.2928 9 7 1.3747 -2.3611 -0.3700 10 6 0.5781 -2.3750 -1.4570 11 8 0.4219 -1.3631 -2.1074 12 6 -0.1184 -3.6476 -1.8646 13 16 -1.1093 -3.3445 -3.3535 14 8 -2.2297 -2.5366 -3.0205 15 6 -1.8365 -4.9174 -3.6727 16 6 -3.0592 -5.2394 -3.1140 17 6 -3.6305 -6.4729 -3.3643 18 6 -2.9785 -7.3852 -4.1748 19 17 -3.6956 -8.9343 -4.4902 20 6 -1.7523 -7.0643 -4.7294 21 6 -1.1846 -5.8286 -4.4826 22 6 1.5630 -3.5831 0.4157 23 6 2.4182 -3.4849 1.6806 24 6 2.9640 -4.1975 0.4416 25 1 -0.4849 0.8368 0.0743 26 1 -0.7700 -3.9800 -1.0565 27 1 0.6243 -4.4178 -2.0726 28 1 -3.5683 -4.5271 -2.4817 29 1 -4.5855 -6.7245 -2.9274 30 1 -1.2406 -7.7779 -5.3582 31 1 -0.2294 -5.5763 -4.9189 32 1 0.7136 -4.2660 0.4339 33 1 2.8404 -2.5111 1.9284 34 1 2.1314 -4.1032 2.5314 35 1 3.0362 -5.2846 0.4772 36 1 3.7454 -3.6927 -0.1263 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900360950.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:28 Heat of formation + Delta-G solvation = -7.255767 kcal Electronic energy + Delta-G solvation = -22753.610495 eV Core-core repulsion = 19164.115311 eV Total energy + Delta-G solvation = -3589.495183 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.25266 -38.58574 -36.70303 -36.14888 -35.31064 -32.90345 -31.24267 -31.18095 -30.85496 -28.97193 -24.70414 -23.02310 -22.94416 -21.78114 -21.27747 -19.58146 -18.20008 -16.94160 -16.57447 -16.11228 -15.72953 -15.54249 -14.87841 -14.63544 -14.40663 -14.28331 -13.85086 -13.76059 -13.68662 -13.43035 -12.87384 -12.39425 -12.18314 -11.88221 -11.80193 -11.75395 -11.28452 -11.11240 -11.06178 -10.95024 -10.86282 -10.62483 -10.23795 -10.05519 -9.90542 -9.80525 -9.22931 -9.11446 -8.77197 -8.24318 -8.00457 -7.11226 -6.13341 -3.91921 0.64876 1.11322 1.81445 2.08907 3.03973 3.29376 3.38023 3.39298 3.47787 3.95766 4.23023 4.27574 4.59956 4.68010 4.70577 4.81993 5.15332 5.21250 5.23980 5.40738 5.50807 5.54102 5.69661 5.73756 5.76953 5.82661 5.97933 5.98633 6.08139 6.15503 6.16613 6.39779 6.58961 6.68217 6.88073 7.57902 8.20239 8.98062 9.03701 9.58552 10.16333 10.95067 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.020531 B = 0.003255 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.437526 B = 8599.614330 C = 9443.384745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.073 3.927 3 Si 0.915 3.085 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.278 1.278 7 C -0.355 4.355 8 H 0.080 0.920 9 N -0.417 5.417 10 C 0.506 3.494 11 O -0.535 6.535 12 C -0.474 4.474 13 S 1.378 4.622 14 O -0.830 6.830 15 C -0.468 4.468 16 C -0.042 4.042 17 C -0.129 4.129 18 C -0.009 4.009 19 Cl -0.074 7.074 20 C -0.131 4.131 21 C -0.032 4.032 22 C 0.073 3.927 23 C -0.174 4.174 24 C -0.205 4.205 25 H 0.267 0.733 26 H 0.098 0.902 27 H 0.125 0.875 28 H 0.136 0.864 29 H 0.132 0.868 30 H 0.137 0.863 31 H 0.147 0.853 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.537 -15.986 -7.953 17.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.139 4.139 3 Si 0.742 3.258 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.204 1.204 7 C -0.481 4.481 8 H 0.098 0.902 9 N -0.137 5.137 10 C 0.292 3.708 11 O -0.414 6.414 12 C -0.613 4.613 13 S 1.571 4.429 14 O -0.826 6.826 15 C -0.561 4.561 16 C -0.061 4.061 17 C -0.149 4.149 18 C -0.035 4.035 19 Cl -0.045 7.045 20 C -0.151 4.151 21 C -0.051 4.051 22 C -0.033 4.033 23 C -0.212 4.212 24 C -0.244 4.244 25 H 0.077 0.923 26 H 0.117 0.883 27 H 0.143 0.857 28 H 0.154 0.846 29 H 0.150 0.850 30 H 0.155 0.845 31 H 0.165 0.835 32 H 0.118 0.882 33 H 0.126 0.874 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.021 -14.647 -8.876 17.157 hybrid contribution -1.139 -0.498 2.053 2.400 sum -2.160 -15.145 -6.823 16.751 Atomic orbital electron populations 1.69819 1.06593 1.27896 1.41658 1.25299 0.94820 0.99556 0.94180 0.86237 0.79244 0.81792 0.78528 1.19694 1.21161 1.20404 1.18830 0.94605 0.83646 1.51049 0.90235 1.42639 1.43524 1.06911 1.20626 1.18765 0.83121 0.86818 0.82067 1.90571 1.63060 1.34061 1.53726 1.28082 1.10251 1.05709 1.17232 1.70136 0.95195 0.76530 1.01075 1.93089 1.49221 1.58049 1.82193 1.28806 1.03270 1.19240 1.04802 1.21219 0.94030 0.94983 0.95910 1.21168 1.00818 0.93693 0.99181 1.21112 0.95256 0.87481 0.99698 1.98372 1.83434 1.28114 1.94597 1.21183 0.94388 0.98095 1.01394 1.20879 0.98841 0.91095 0.94275 1.21702 0.92591 0.91589 0.97418 1.23072 1.04448 1.02560 0.91098 1.23312 0.99543 0.98493 1.03032 0.92252 0.88314 0.85651 0.84587 0.84981 0.84509 0.83507 0.88193 0.87386 0.89856 0.89781 0.88894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.94 11.74 55.50 0.65 -24.28 16 2 C 0.07 2.05 4.39 -17.47 -0.08 1.97 16 3 Si 0.92 21.69 29.59 -169.99 -5.03 16.66 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.35 -9.46 7.92 -14.93 -0.12 -9.58 16 8 H 0.08 2.03 7.26 -52.49 -0.38 1.65 16 9 N -0.42 -10.18 2.83 -107.72 -0.31 -10.48 16 10 C 0.51 12.31 6.98 -10.99 -0.08 12.24 16 11 O -0.53 -15.02 13.62 5.54 0.08 -14.94 16 12 C -0.47 -8.44 4.99 36.00 0.18 -8.26 16 13 S 1.38 22.17 12.68 -107.50 -1.36 20.81 16 14 O -0.83 -18.93 16.90 -35.23 -0.60 -19.52 16 15 C -0.47 -6.14 5.61 -39.58 -0.22 -6.36 16 16 C -0.04 -0.60 9.44 -39.59 -0.37 -0.97 16 17 C -0.13 -1.56 9.83 -39.55 -0.39 -1.95 16 18 C -0.01 -0.10 6.32 -39.50 -0.25 -0.35 16 19 Cl -0.07 -0.73 28.96 -51.86 -1.50 -2.23 16 20 C -0.13 -1.27 9.83 -39.55 -0.39 -1.66 16 21 C -0.03 -0.31 9.75 -39.59 -0.39 -0.70 16 22 C 0.07 1.43 5.87 -67.92 -0.40 1.03 16 23 C -0.17 -3.07 9.80 -26.73 -0.26 -3.33 16 24 C -0.20 -3.30 10.36 -26.73 -0.28 -3.57 16 25 H 0.27 7.79 8.32 -40.82 -0.34 7.45 16 26 H 0.10 1.80 7.56 -51.92 -0.39 1.41 16 27 H 0.13 1.69 8.11 -51.93 -0.42 1.27 16 28 H 0.14 2.12 7.45 -52.49 -0.39 1.73 16 29 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 30 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 31 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 32 H 0.10 1.78 6.96 -51.93 -0.36 1.42 16 33 H 0.11 2.11 6.72 -51.93 -0.35 1.76 16 34 H 0.08 1.26 8.14 -51.92 -0.42 0.84 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 LS Contribution 339.72 15.07 5.12 5.12 Total: -1.00 -37.39 339.72 -9.96 -47.35 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -3.97 Total: 3.02 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: -3.04 Total: -21.49 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: 0.35 Total: -34.77 kcal Atomic # 8 Polarization: -33.94 SS G_CDS: -0.52 Total: -34.46 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Atomic # 16 Polarization: 22.17 SS G_CDS: -1.36 Total: 20.81 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.50 Total: -2.23 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -37.39 -9.96 -47.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900360950.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.095 kcal (2) G-P(sol) polarization free energy of solvation -37.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds