Wall clock time and date at job start Tue Mar 31 2020 14:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86804 * 120.00441 * 2 1 4 4 H 1.48499 * 109.47220 * 240.00082 * 3 2 1 5 5 H 1.48496 * 109.46764 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47263 * 119.99686 * 3 2 1 7 7 C 1.38954 * 119.99949 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00623 * 198.20729 * 7 2 1 9 9 N 1.37102 * 119.99310 * 18.20970 * 7 2 1 10 10 C 1.34771 * 120.00646 * 44.28898 * 9 7 2 11 11 O 1.21296 * 119.99798 * 359.97438 * 10 9 7 12 12 C 1.50694 * 120.00217 * 179.97438 * 10 9 7 13 13 S 1.81403 * 109.47004 * 179.97438 * 12 10 9 14 14 O 1.42095 * 109.47056 * 289.05447 * 13 12 10 15 15 C 1.76208 * 102.99836 * 180.02562 * 13 12 10 16 16 C 1.38234 * 119.98667 * 90.00382 * 15 13 12 17 17 C 1.38217 * 120.01432 * 179.97438 * 16 15 13 18 18 C 1.38354 * 119.98622 * 359.97438 * 17 16 15 19 19 Cl 1.73596 * 120.01281 * 180.02562 * 18 17 16 20 20 C 1.38354 * 119.97143 * 0.27945 * 18 17 16 21 21 C 1.38212 * 119.98721 * 359.46358 * 20 18 17 22 22 C 1.46502 * 119.99662 * 224.28616 * 9 7 2 23 23 C 1.53007 * 117.49734 * 3.22445 * 22 9 7 24 24 C 1.53000 * 60.00080 * 252.51183 * 23 22 9 25 25 H 0.97001 * 119.99462 * 354.92491 * 1 2 3 26 26 H 1.09002 * 109.47368 * 60.00343 * 12 10 9 27 27 H 1.08998 * 109.47352 * 299.99903 * 12 10 9 28 28 H 1.07999 * 119.99349 * 359.97355 * 16 15 13 29 29 H 1.07994 * 120.00548 * 179.97438 * 17 16 15 30 30 H 1.07995 * 120.00490 * 179.69950 * 20 18 17 31 31 H 1.07998 * 119.99797 * 180.26203 * 21 20 18 32 32 H 1.08998 * 115.55526 * 148.93528 * 22 9 7 33 33 H 1.08993 * 117.50072 * 0.02562 * 23 22 9 34 34 H 1.09007 * 117.49592 * 145.02308 * 23 22 9 35 35 H 1.09005 * 117.49691 * 252.51057 * 24 23 22 36 36 H 1.08995 * 117.51650 * 107.48167 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6963 -1.2125 5 1 1.2833 2.7464 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0482 -1.2268 0.2928 9 7 1.3747 -2.3611 -0.3700 10 6 0.5781 -2.3750 -1.4570 11 8 0.4219 -1.3631 -2.1074 12 6 -0.1184 -3.6476 -1.8646 13 16 -1.1093 -3.3445 -3.3535 14 8 -2.2297 -2.5366 -3.0205 15 6 -1.8365 -4.9174 -3.6727 16 6 -3.0592 -5.2394 -3.1140 17 6 -3.6305 -6.4729 -3.3643 18 6 -2.9785 -7.3852 -4.1748 19 17 -3.6956 -8.9343 -4.4902 20 6 -1.7523 -7.0643 -4.7294 21 6 -1.1846 -5.8286 -4.4826 22 6 1.5630 -3.5831 0.4157 23 6 2.4182 -3.4849 1.6806 24 6 2.9640 -4.1975 0.4416 25 1 -0.4849 0.8368 0.0743 26 1 -0.7700 -3.9800 -1.0565 27 1 0.6243 -4.4178 -2.0726 28 1 -3.5683 -4.5271 -2.4817 29 1 -4.5855 -6.7245 -2.9274 30 1 -1.2406 -7.7779 -5.3582 31 1 -0.2294 -5.5763 -4.9189 32 1 0.7136 -4.2660 0.4339 33 1 2.8404 -2.5111 1.9284 34 1 2.1314 -4.1032 2.5314 35 1 3.0362 -5.2846 0.4772 36 1 3.7454 -3.6927 -0.1263 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900360950.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:28 Heat of formation + Delta-G solvation = -32.837571 kcal Electronic energy + Delta-G solvation = -22754.719805 eV Core-core repulsion = 19164.115311 eV Total energy + Delta-G solvation = -3590.604494 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.35563 -40.14462 -37.79732 -37.52668 -36.86656 -34.83641 -32.99680 -32.12562 -31.84501 -30.60619 -26.65332 -23.92193 -23.90256 -23.16560 -22.84253 -21.38497 -19.32858 -18.29658 -18.06259 -17.81817 -17.03247 -16.64739 -16.43094 -16.26966 -15.88110 -15.46929 -15.34646 -15.18959 -14.58369 -14.49462 -14.41867 -13.95331 -13.71047 -13.41928 -12.90963 -12.88235 -12.75311 -12.66801 -12.61813 -12.49567 -12.20187 -12.12137 -11.88267 -11.67175 -11.34624 -11.22353 -10.74899 -10.14816 -10.10277 -10.03041 -9.36116 -9.00392 -8.21079 -6.01480 -0.33333 0.23487 0.79917 1.02398 1.37444 1.46398 1.50581 1.85686 2.18561 2.38923 2.50221 2.92960 3.11056 3.15144 3.34921 3.72241 3.86927 3.96199 4.12593 4.27490 4.28989 4.31633 4.41551 4.51240 4.55265 4.65340 4.88987 4.91797 4.94412 5.03713 5.11307 5.23790 5.29665 5.46240 5.50136 5.71725 6.16509 7.00157 7.11943 7.66228 8.27969 8.86813 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.020531 B = 0.003255 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.437526 B = 8599.614330 C = 9443.384745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.017 3.983 3 Si 0.974 3.026 4 H -0.271 1.271 5 H -0.294 1.294 6 H -0.256 1.256 7 C -0.355 4.355 8 H 0.086 0.914 9 N -0.437 5.437 10 C 0.488 3.512 11 O -0.584 6.584 12 C -0.465 4.465 13 S 1.419 4.581 14 O -0.910 6.910 15 C -0.474 4.474 16 C -0.068 4.068 17 C -0.136 4.136 18 C -0.010 4.010 19 Cl -0.061 7.061 20 C -0.122 4.122 21 C -0.016 4.016 22 C 0.039 3.961 23 C -0.179 4.179 24 C -0.166 4.166 25 H 0.257 0.743 26 H 0.091 0.909 27 H 0.176 0.824 28 H 0.105 0.895 29 H 0.140 0.860 30 H 0.173 0.827 31 H 0.195 0.805 32 H 0.117 0.883 33 H 0.081 0.919 34 H 0.112 0.888 35 H 0.127 0.873 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.677 -19.624 -8.957 21.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.189 4.189 3 Si 0.798 3.202 4 H -0.196 1.196 5 H -0.221 1.221 6 H -0.180 1.180 7 C -0.482 4.482 8 H 0.104 0.896 9 N -0.157 5.157 10 C 0.277 3.723 11 O -0.467 6.467 12 C -0.602 4.602 13 S 1.615 4.385 14 O -0.906 6.906 15 C -0.571 4.571 16 C -0.087 4.087 17 C -0.156 4.156 18 C -0.037 4.037 19 Cl -0.032 7.032 20 C -0.142 4.142 21 C -0.035 4.035 22 C -0.066 4.066 23 C -0.216 4.216 24 C -0.204 4.204 25 H 0.066 0.934 26 H 0.110 0.890 27 H 0.193 0.807 28 H 0.123 0.877 29 H 0.158 0.842 30 H 0.191 0.809 31 H 0.212 0.788 32 H 0.134 0.866 33 H 0.100 0.900 34 H 0.130 0.870 35 H 0.145 0.855 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.247 -18.286 -9.833 20.800 hybrid contribution -1.808 0.361 2.319 2.962 sum -0.561 -17.925 -7.515 19.445 Atomic orbital electron populations 1.69977 1.08392 1.27749 1.45144 1.26185 0.95369 1.03111 0.94209 0.85320 0.77981 0.77659 0.79236 1.19589 1.22061 1.18012 1.19144 0.94966 0.84824 1.49309 0.89613 1.42921 1.43406 1.07921 1.21412 1.19712 0.82697 0.88260 0.81652 1.90532 1.64500 1.36416 1.55275 1.27977 1.11035 1.03609 1.17627 1.69089 0.93560 0.76802 0.99011 1.92974 1.52208 1.62454 1.82981 1.28220 1.03479 1.18262 1.07155 1.21093 0.95031 0.95605 0.96988 1.21204 1.01390 0.93197 0.99825 1.21313 0.95734 0.87688 0.98989 1.98383 1.83392 1.27030 1.94390 1.21630 0.93555 0.98398 1.00580 1.21415 0.99989 0.89972 0.92124 1.21986 0.95246 0.90596 0.98773 1.23129 1.03986 1.02326 0.92163 1.23337 0.96119 1.00590 1.00382 0.93357 0.89016 0.80653 0.87660 0.84237 0.80914 0.78770 0.86568 0.89999 0.87025 0.85468 0.89785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -55.65 11.74 21.66 0.25 -55.39 16 2 C 0.02 0.99 4.39 84.93 0.37 1.36 16 3 Si 0.97 45.82 29.59 68.60 2.03 47.85 16 4 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 6 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 7 C -0.35 -19.24 7.92 84.04 0.67 -18.57 16 8 H 0.09 4.39 7.26 -2.91 -0.02 4.37 16 9 N -0.44 -21.43 2.83 -613.11 -1.74 -23.17 16 10 C 0.49 24.20 6.98 87.66 0.61 24.82 16 11 O -0.58 -34.21 13.62 -3.08 -0.04 -34.26 16 12 C -0.46 -16.27 4.99 71.23 0.36 -15.91 16 13 S 1.42 46.20 12.68 -56.49 -0.72 45.48 16 14 O -0.91 -44.31 16.90 -148.98 -2.52 -46.82 16 15 C -0.47 -11.80 5.61 22.27 0.12 -11.68 16 16 C -0.07 -1.93 9.44 22.26 0.21 -1.72 16 17 C -0.14 -3.17 9.83 22.29 0.22 -2.95 16 18 C -0.01 -0.20 6.32 22.32 0.14 -0.06 16 19 Cl -0.06 -1.03 28.96 -2.72 -0.08 -1.10 16 20 C -0.12 -1.80 9.83 22.29 0.22 -1.58 16 21 C -0.02 -0.25 9.75 22.27 0.22 -0.03 16 22 C 0.04 1.45 5.87 45.00 0.26 1.72 16 23 C -0.18 -5.92 9.80 30.60 0.30 -5.62 16 24 C -0.17 -4.72 10.36 30.60 0.32 -4.40 16 25 H 0.26 15.99 8.32 -92.71 -0.77 15.22 16 26 H 0.09 3.36 7.56 -2.39 -0.02 3.34 16 27 H 0.18 4.15 8.11 -2.39 -0.02 4.13 16 28 H 0.11 3.60 7.45 -2.91 -0.02 3.58 16 29 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 30 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 31 H 0.20 1.11 8.06 -2.91 -0.02 1.09 16 32 H 0.12 3.89 6.96 -2.39 -0.02 3.88 16 33 H 0.08 3.16 6.72 -2.39 -0.02 3.14 16 34 H 0.11 3.03 8.14 -2.38 -0.02 3.01 16 35 H 0.13 2.59 8.14 -2.38 -0.02 2.57 16 36 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -88.73 339.72 2.32 -86.42 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 1.11 Total: 15.63 kcal Atomic # 6 Polarization: -38.66 SS G_CDS: 4.02 Total: -34.64 kcal Atomic # 7 Polarization: -77.07 SS G_CDS: -1.48 Total: -78.56 kcal Atomic # 8 Polarization: -78.52 SS G_CDS: -2.56 Total: -81.08 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Atomic # 16 Polarization: 46.20 SS G_CDS: -0.72 Total: 45.48 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -0.08 Total: -1.10 kcal Total: -88.73 2.32 -86.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900360950.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.578 kcal (2) G-P(sol) polarization free energy of solvation -88.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds