Wall clock time and date at job start Tue Mar 31 2020 15:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31435 * 1 3 3 Si 1.86795 * 120.00111 * 2 1 4 4 H 1.48504 * 109.47262 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47161 * 299.99800 * 3 2 1 6 6 H 1.48504 * 109.47193 * 59.99988 * 3 2 1 7 7 C 1.38779 * 119.99938 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00003 * 180.02562 * 7 2 1 9 9 O 1.34885 * 119.99952 * 359.97438 * 7 2 1 10 10 C 1.34785 * 116.99988 * 180.02562 * 9 7 2 11 11 O 1.21541 * 119.99591 * 0.02562 * 10 9 7 12 12 C 1.47327 * 119.99739 * 179.97438 * 10 9 7 13 13 C 1.36736 * 125.77722 * 180.28717 * 12 10 9 14 14 N 1.35066 * 106.77733 * 180.13914 * 13 12 10 15 15 C 1.40223 * 126.60181 * 179.91290 * 14 13 12 16 16 C 1.38853 * 120.06446 * 359.93971 * 15 14 13 17 17 C 1.38101 * 119.93408 * 180.26140 * 16 15 14 18 18 C 1.38301 * 120.06232 * 359.75906 * 17 16 15 19 19 C 1.38256 * 120.13302 * 0.02562 * 18 17 16 20 20 C 1.38136 * 120.06574 * 359.97387 * 19 18 17 21 21 C 1.50703 * 120.03248 * 180.02562 * 20 19 18 22 22 F 1.39905 * 109.47157 * 359.97438 * 21 20 19 23 23 F 1.39900 * 109.47159 * 240.00255 * 21 20 19 24 24 F 1.39897 * 109.47274 * 119.99946 * 21 20 19 25 25 N 1.40204 * 106.79591 * 359.64778 * 14 13 12 26 26 N 1.28747 * 108.41446 * 0.22759 * 25 14 13 27 27 H 0.97001 * 119.99859 * 0.02562 * 1 2 3 28 28 H 1.07993 * 126.61016 * 0.02562 * 13 12 10 29 29 H 1.07998 * 120.03395 * 0.02562 * 16 15 14 30 30 H 1.07995 * 119.96597 * 179.74875 * 17 16 15 31 31 H 1.08009 * 119.93158 * 179.97438 * 18 17 16 32 32 H 1.08005 * 119.96287 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 3.7084 1.3463 0.0006 5 1 1.8897 2.3964 -1.2125 6 1 1.8896 2.3964 1.2125 7 6 2.0082 -1.2019 -0.0005 8 1 3.0881 -1.2019 -0.0001 9 8 1.3338 -2.3700 -0.0005 10 6 2.0679 -3.5004 -0.0005 11 8 3.2816 -3.4367 -0.0001 12 6 1.3989 -4.8131 0.0000 13 6 2.0243 -6.0290 0.0057 14 7 1.0527 -6.9672 0.0009 15 6 1.2332 -8.3578 0.0023 16 6 2.5144 -8.8929 0.0078 17 6 2.6891 -10.2628 0.0037 18 6 1.5894 -11.1014 -0.0009 19 6 0.3124 -10.5715 -0.0019 20 6 0.1315 -9.2020 0.0022 21 6 -1.2608 -8.6252 0.0016 22 9 -2.1965 -9.6652 -0.0040 23 9 -1.4372 -7.8338 -1.1384 24 9 -1.4412 -7.8411 1.1461 25 7 -0.1711 -6.2831 0.0005 26 7 0.0700 -5.0183 0.0000 27 1 -0.4850 0.8401 -0.0004 28 1 3.0898 -6.2052 0.0108 29 1 3.3736 -8.2385 0.0115 30 1 3.6854 -10.6796 0.0039 31 1 1.7284 -12.1725 -0.0045 32 1 -0.5445 -11.2289 -0.0060 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914912958.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:32 Heat of formation + Delta-G solvation = -90.229528 kcal Electronic energy + Delta-G solvation = -27241.355522 eV Core-core repulsion = 22562.545221 eV Total energy + Delta-G solvation = -4678.810301 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.062 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.16635 -48.72364 -48.59347 -43.68416 -40.96440 -40.49176 -37.34463 -35.96962 -34.35002 -33.42683 -32.21385 -31.17858 -27.88230 -27.30440 -25.73394 -24.95667 -23.39370 -22.76396 -21.78439 -20.30884 -19.90727 -19.48956 -19.48042 -18.96599 -18.01446 -17.59200 -17.02989 -16.54452 -16.39713 -16.30101 -16.15720 -16.09869 -15.48848 -15.46313 -15.05697 -15.02875 -14.90694 -14.78711 -14.66239 -14.37517 -13.80334 -13.66056 -13.29246 -13.22812 -12.90058 -12.52678 -12.51969 -12.39248 -12.33733 -12.15222 -12.00225 -11.37724 -10.79802 -10.71371 -10.46203 -9.81302 -8.56685 -6.36715 -0.91881 -0.13926 0.34022 0.55744 0.65613 1.35045 1.42072 1.56088 1.60380 2.02436 2.03217 2.35261 2.45796 2.64084 2.86829 2.98787 3.10897 3.22294 3.34200 3.57604 3.73328 3.92710 4.00452 4.12115 4.20798 4.28949 4.60096 4.74367 4.93493 5.09537 5.12948 5.21885 5.25919 5.64347 5.75269 6.41742 6.66381 6.85508 7.67412 8.64178 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.023721 B = 0.003179 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.108916 B = 8806.833770 C = 9812.443740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C -0.008 4.008 3 Si 1.028 2.972 4 H -0.255 1.255 5 H -0.260 1.260 6 H -0.260 1.260 7 C -0.421 4.421 8 H 0.096 0.904 9 O -0.226 6.226 10 C 0.478 3.522 11 O -0.560 6.560 12 C -0.076 4.076 13 C 0.122 3.878 14 N -0.320 5.320 15 C 0.147 3.853 16 C -0.122 4.122 17 C -0.048 4.048 18 C -0.098 4.098 19 C -0.055 4.055 20 C -0.196 4.196 21 C 0.505 3.495 22 F -0.174 7.174 23 F -0.182 7.182 24 F -0.182 7.182 25 N -0.074 5.074 26 N -0.210 5.210 27 H 0.280 0.720 28 H 0.258 0.742 29 H 0.170 0.830 30 H 0.191 0.809 31 H 0.187 0.813 32 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.131 -28.149 0.018 28.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.209 4.209 3 Si 0.845 3.155 4 H -0.179 1.179 5 H -0.185 1.185 6 H -0.185 1.185 7 C -0.496 4.496 8 H 0.114 0.886 9 O -0.132 6.132 10 C 0.325 3.675 11 O -0.457 6.457 12 C -0.212 4.212 13 C -0.030 4.030 14 N -0.099 5.099 15 C 0.056 3.944 16 C -0.143 4.143 17 C -0.067 4.067 18 C -0.116 4.116 19 C -0.073 4.073 20 C -0.200 4.200 21 C 0.451 3.549 22 F -0.155 7.155 23 F -0.163 7.163 24 F -0.163 7.163 25 N -0.053 5.053 26 N -0.084 5.084 27 H 0.090 0.910 28 H 0.274 0.726 29 H 0.187 0.813 30 H 0.208 0.792 31 H 0.204 0.796 32 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 4.654 -28.022 0.015 28.406 hybrid contribution 0.291 1.391 0.001 1.421 sum 4.945 -26.631 0.016 27.086 Atomic orbital electron populations 1.70158 1.08163 1.29620 1.45606 1.26810 0.96891 1.02869 0.94308 0.84437 0.78044 0.73806 0.79167 1.17852 1.18477 1.18488 1.21743 0.92705 0.80489 1.54672 0.88627 1.84025 1.39964 1.14020 1.75200 1.19653 0.85015 0.84284 0.78577 1.90610 1.14364 1.87809 1.52941 1.20564 0.89388 0.93436 1.17812 1.23731 0.98317 0.85172 0.95827 1.47896 1.06554 1.06588 1.48817 1.17800 0.96390 0.76109 1.04085 1.21499 0.93006 0.98573 1.01203 1.21855 1.02346 0.90361 0.92092 1.21897 0.89998 1.03268 0.96452 1.21367 1.01493 0.90329 0.94143 1.19882 0.89267 0.96733 1.14112 1.18319 0.86972 0.75642 0.73974 1.93146 1.68427 1.57682 1.96270 1.93222 1.96069 1.75572 1.51476 1.93220 1.96033 1.75962 1.51135 1.82189 1.02284 0.97688 1.23153 1.74859 1.15774 1.08570 1.09244 0.91023 0.72632 0.81257 0.79192 0.79603 0.81653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -56.14 13.67 21.63 0.30 -55.84 16 2 C -0.01 -0.47 5.49 84.88 0.47 0.00 16 3 Si 1.03 44.12 29.55 68.60 2.03 46.15 16 4 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 5 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 6 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 7 C -0.42 -26.35 9.65 67.95 0.66 -25.69 16 8 H 0.10 5.85 6.86 -2.92 -0.02 5.83 16 9 O -0.23 -14.45 9.75 10.49 0.10 -14.35 16 10 C 0.48 26.03 7.90 70.21 0.55 26.59 16 11 O -0.56 -30.17 16.11 19.70 0.32 -29.86 16 12 C -0.08 -3.45 7.02 40.78 0.29 -3.16 16 13 C 0.12 3.85 10.61 83.84 0.89 4.74 16 14 N -0.32 -9.98 3.77 -186.82 -0.70 -10.69 16 15 C 0.15 3.20 6.59 38.08 0.25 3.45 16 16 C -0.12 -1.37 9.47 22.38 0.21 -1.16 16 17 C -0.05 -0.18 10.04 22.25 0.22 0.04 16 18 C -0.10 -0.38 10.04 22.29 0.22 -0.16 16 19 C -0.06 -0.61 9.43 22.25 0.21 -0.40 16 20 C -0.20 -4.12 5.38 -19.75 -0.11 -4.23 16 21 C 0.51 14.23 2.78 71.24 0.20 14.43 16 22 F -0.17 -4.12 15.97 44.97 0.72 -3.40 16 23 F -0.18 -6.20 14.87 44.97 0.67 -5.54 16 24 F -0.18 -6.20 14.92 44.97 0.67 -5.53 16 25 N -0.07 -3.06 7.69 37.02 0.28 -2.77 16 26 N -0.21 -10.20 12.39 -50.02 -0.62 -10.82 16 27 H 0.28 15.75 8.31 -92.71 -0.77 14.98 16 28 H 0.26 5.18 7.13 -2.91 -0.02 5.15 16 29 H 0.17 1.11 6.81 -2.91 -0.02 1.09 16 30 H 0.19 -0.80 8.06 -2.91 -0.02 -0.82 16 31 H 0.19 -0.74 8.06 -2.91 -0.02 -0.76 16 32 H 0.17 1.25 7.16 -2.91 -0.02 1.23 16 Total: -1.00 -89.83 306.80 9.05 -80.78 By element: Atomic # 1 Polarization: -3.79 SS G_CDS: 1.22 Total: -2.57 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: 4.06 Total: 14.44 kcal Atomic # 7 Polarization: -79.38 SS G_CDS: -0.74 Total: -80.13 kcal Atomic # 8 Polarization: -44.63 SS G_CDS: 0.42 Total: -44.21 kcal Atomic # 9 Polarization: -16.53 SS G_CDS: 2.06 Total: -14.47 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -89.83 9.05 -80.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914912958.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.448 kcal (2) G-P(sol) polarization free energy of solvation -89.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds