Wall clock time and date at job start Tue Mar 31 2020 15:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46983 * 2 1 4 4 N 1.46901 * 109.46996 * 120.00183 * 2 1 3 5 5 C 1.46905 * 110.99870 * 299.99880 * 4 2 1 6 6 C 1.52993 * 109.47039 * 180.02562 * 5 4 2 7 7 H 1.08998 * 109.47408 * 60.00073 * 6 5 4 8 8 O 1.42906 * 109.47257 * 300.00098 * 6 5 4 9 9 C 1.50698 * 109.47393 * 180.02562 * 6 5 4 10 10 H 1.08010 * 119.99765 * 359.97438 * 9 6 5 11 11 C 1.37872 * 120.00736 * 179.97438 * 9 6 5 12 12 N 1.31523 * 119.99548 * 359.97438 * 11 9 6 13 13 Si 1.86793 * 120.00627 * 179.97438 * 11 9 6 14 14 H 1.48498 * 109.47202 * 90.00137 * 13 11 9 15 15 H 1.48501 * 109.47603 * 210.00337 * 13 11 9 16 16 H 1.48506 * 109.47086 * 329.99976 * 13 11 9 17 17 C 1.50697 * 109.46992 * 239.99806 * 2 1 3 18 18 C 1.38239 * 119.98964 * 239.72348 * 17 2 1 19 19 C 1.38218 * 120.00915 * 179.77166 * 18 17 2 20 20 C 1.38331 * 119.98961 * 0.50527 * 19 18 17 21 21 Br 1.89098 * 120.01022 * 179.72110 * 20 19 18 22 22 C 1.38325 * 119.97712 * 359.75153 * 20 19 18 23 23 C 1.38216 * 119.99127 * 359.97438 * 22 20 19 24 24 H 1.08997 * 109.46669 * 300.00058 * 1 2 3 25 25 H 1.08993 * 109.47109 * 59.99986 * 1 2 3 26 26 H 1.08995 * 109.46960 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46669 * 179.97438 * 3 2 1 28 28 H 1.08993 * 109.47210 * 299.99953 * 3 2 1 29 29 H 1.09004 * 109.47282 * 60.00137 * 3 2 1 30 30 H 1.00901 * 111.00067 * 63.95055 * 4 2 1 31 31 H 1.09001 * 109.46798 * 300.00327 * 5 4 2 32 32 H 1.08998 * 109.46961 * 60.00043 * 5 4 2 33 33 H 0.96709 * 113.99630 * 299.99873 * 8 6 5 34 34 H 0.97002 * 119.99722 * 180.02562 * 12 11 9 35 35 H 1.07999 * 119.99798 * 0.02562 * 18 17 2 36 36 H 1.08004 * 120.01090 * 180.23424 * 19 18 17 37 37 H 1.08007 * 120.00474 * 179.97438 * 22 20 19 38 38 H 1.08004 * 119.99257 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.5487 -0.0264 2.4211 6 6 2.0782 -0.7742 3.6463 7 1 3.1680 -0.7737 3.6293 8 8 1.6022 -2.1215 3.6245 9 6 1.5945 -0.0913 4.8995 10 1 0.9720 0.7885 4.8292 11 6 1.9466 -0.5895 6.1360 12 7 2.7042 -1.6611 6.2216 13 14 1.3476 0.2575 7.6894 14 1 0.0457 -0.3264 8.1009 15 1 2.3425 0.0628 8.7745 16 1 1.1785 1.7095 7.4278 17 6 2.0324 -0.7104 -1.2304 18 6 2.8318 -1.8310 -1.1033 19 6 3.2888 -2.4857 -2.2316 20 6 2.9548 -2.0133 -3.4881 21 35 3.5863 -2.9040 -5.0320 22 6 2.1592 -0.8889 -3.6147 23 6 1.6980 -0.2382 -2.4859 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9564 0.8900 30 1 1.7502 -1.6649 1.1909 31 1 1.9121 1.0011 2.4378 32 1 0.4588 -0.0266 2.4378 33 1 0.6382 -2.1983 3.6379 34 1 2.9516 -2.0119 7.0915 35 1 3.0960 -2.1974 -0.1223 36 1 3.9103 -3.3635 -2.1323 37 1 1.8984 -0.5194 -4.5955 38 1 1.0771 0.6400 -2.5847 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929885887.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:56 Heat of formation + Delta-G solvation = -26.791874 kcal Electronic energy + Delta-G solvation = -19913.741270 eV Core-core repulsion = 16802.051475 eV Total energy + Delta-G solvation = -3111.689795 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.95374 -37.45102 -35.45416 -32.34398 -32.10702 -31.34909 -30.53446 -28.58810 -27.70036 -27.16677 -24.56958 -22.58720 -22.55930 -20.57053 -19.18152 -17.13927 -16.92208 -15.61337 -15.31942 -14.84104 -14.58424 -14.50718 -14.03733 -13.83517 -13.73511 -13.55328 -13.02814 -12.73272 -12.51837 -12.32307 -11.93485 -11.80449 -11.40176 -11.19243 -10.99552 -10.97591 -10.85059 -10.76332 -10.67735 -10.46469 -10.38430 -10.08877 -9.06537 -9.03122 -8.61996 -8.59268 -8.21526 -7.84046 -6.02252 -4.20640 1.03982 1.27771 1.52414 3.25874 3.33387 3.35555 3.57544 4.31465 4.49171 4.68001 4.79303 4.84638 5.14402 5.24055 5.25339 5.31061 5.41515 5.62436 5.67926 5.79393 5.83672 5.91594 5.94242 6.07056 6.13918 6.17560 6.22745 6.33072 6.42527 6.45103 6.56653 6.79207 6.89611 7.49226 7.73846 7.80182 7.95459 8.20286 8.82734 9.35459 9.56417 11.01957 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.031433 B = 0.002535 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.569445 B =11043.468875 C =11663.756919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.143 3.857 3 C -0.135 4.135 4 N -0.675 5.675 5 C 0.032 3.968 6 C 0.232 3.768 7 H 0.063 0.937 8 O -0.565 6.565 9 C -0.573 4.573 10 H 0.054 0.946 11 C 0.080 3.920 12 N -0.857 5.857 13 Si 0.889 3.111 14 H -0.280 1.280 15 H -0.285 1.285 16 H -0.274 1.274 17 C -0.046 4.046 18 C -0.095 4.095 19 C -0.091 4.091 20 C -0.097 4.097 21 Br -0.064 7.064 22 C -0.095 4.095 23 C -0.113 4.113 24 H 0.067 0.933 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.344 0.656 31 H 0.069 0.931 32 H 0.023 0.977 33 H 0.340 0.660 34 H 0.260 0.740 35 H 0.148 0.852 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.396 0.412 -22.700 22.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.051 3.949 3 C -0.192 4.192 4 N -0.307 5.307 5 C -0.097 4.097 6 C 0.174 3.826 7 H 0.081 0.919 8 O -0.367 6.367 9 C -0.611 4.611 10 H 0.072 0.928 11 C -0.127 4.127 12 N -0.493 5.493 13 Si 0.716 3.284 14 H -0.206 1.206 15 H -0.211 1.211 16 H -0.199 1.199 17 C -0.047 4.047 18 C -0.114 4.114 19 C -0.111 4.111 20 C -0.177 4.177 21 Br 0.021 6.979 22 C -0.115 4.115 23 C -0.132 4.132 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.164 0.836 31 H 0.087 0.913 32 H 0.041 0.959 33 H 0.184 0.816 34 H 0.070 0.930 35 H 0.166 0.834 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.220 0.142 -23.164 23.165 hybrid contribution -1.985 0.595 1.263 2.427 sum -1.766 0.737 -21.901 21.985 Atomic orbital electron populations 1.22554 0.96419 1.02201 1.02410 1.19810 0.92047 0.94316 0.88703 1.21875 1.02129 0.93632 1.01592 1.60757 1.62849 1.06464 1.00625 1.22949 0.96820 0.99409 0.90499 1.19425 0.95670 0.79097 0.88399 0.91916 1.86592 1.23268 1.30047 1.96828 1.21615 1.34319 1.13659 0.91551 0.92763 1.25029 0.94145 0.94440 0.99051 1.70084 1.34068 1.20910 1.24239 0.86682 0.78621 0.80009 0.83090 1.20599 1.21098 1.19865 1.20037 0.95660 0.94789 0.94164 1.21301 0.96157 0.94700 0.99253 1.21176 0.99366 0.99921 0.90651 1.21738 1.04582 0.99372 0.91966 1.96673 1.87767 1.77769 1.35718 1.20985 0.96999 0.94248 0.99247 1.20956 1.00594 1.00218 0.91408 0.91409 0.92484 0.92599 0.91703 0.92766 0.91661 0.83579 0.91280 0.95900 0.81647 0.92995 0.83437 0.85131 0.85417 0.85438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.19 8.04 37.16 0.30 -1.89 16 2 C 0.14 1.91 0.79 -132.75 -0.11 1.81 16 3 C -0.13 -1.73 8.05 37.16 0.30 -1.43 16 4 N -0.67 -11.05 5.09 -101.14 -0.52 -11.56 16 5 C 0.03 0.61 4.54 -3.82 -0.02 0.59 16 6 C 0.23 5.64 3.10 -27.89 -0.09 5.55 16 7 H 0.06 1.73 8.14 -51.93 -0.42 1.31 16 8 O -0.57 -13.81 12.06 -35.23 -0.43 -14.24 16 9 C -0.57 -15.33 8.76 -34.44 -0.30 -15.63 16 10 H 0.05 1.42 7.74 -52.48 -0.41 1.01 16 11 C 0.08 2.20 5.40 -17.82 -0.10 2.10 16 12 N -0.86 -25.06 12.84 55.43 0.71 -24.35 16 13 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 16 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 17 C -0.05 -0.57 4.77 -104.62 -0.50 -1.07 16 18 C -0.10 -1.24 9.14 -39.59 -0.36 -1.60 16 19 C -0.09 -1.09 9.79 -39.55 -0.39 -1.48 16 20 C -0.10 -1.11 6.22 -39.52 -0.25 -1.36 16 21 Br -0.06 -0.66 33.70 -68.01 -2.29 -2.95 16 22 C -0.09 -1.01 9.79 -39.56 -0.39 -1.40 16 23 C -0.11 -1.23 8.71 -39.59 -0.34 -1.57 16 24 H 0.07 0.90 6.40 -51.93 -0.33 0.57 16 25 H 0.06 0.60 7.39 -51.93 -0.38 0.21 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.05 0.57 7.39 -51.93 -0.38 0.19 16 29 H 0.06 0.88 6.40 -51.93 -0.33 0.55 16 30 H 0.34 5.74 6.96 -39.29 -0.27 5.46 16 31 H 0.07 1.33 6.30 -51.93 -0.33 1.01 16 32 H 0.02 0.43 6.30 -51.93 -0.33 0.10 16 33 H 0.34 7.40 9.04 45.56 0.41 7.81 16 34 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.15 2.05 6.41 -52.49 -0.34 1.72 16 36 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 37 H 0.13 1.12 8.06 -52.48 -0.42 0.69 16 38 H 0.13 1.16 7.10 -52.48 -0.37 0.79 16 LS Contribution 327.96 15.07 4.94 4.94 Total: -1.00 -28.83 327.96 -9.15 -37.98 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -4.31 Total: 11.70 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: -2.24 Total: -17.38 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: 0.20 Total: -35.91 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.43 Total: -14.24 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 35 Polarization: -0.66 SS G_CDS: -2.29 Total: -2.95 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.83 -9.15 -37.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929885887.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.186 kcal (2) G-P(sol) polarization free energy of solvation -28.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds