Wall clock time and date at job start Tue Mar 31 2020 15:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46983 * 2 1 4 4 N 1.46901 * 109.46996 * 120.00183 * 2 1 3 5 5 C 1.46905 * 110.99870 * 299.99880 * 4 2 1 6 6 C 1.52993 * 109.47039 * 180.02562 * 5 4 2 7 7 H 1.08998 * 109.47408 * 60.00073 * 6 5 4 8 8 O 1.42906 * 109.47257 * 300.00098 * 6 5 4 9 9 C 1.50698 * 109.47393 * 180.02562 * 6 5 4 10 10 H 1.08010 * 119.99765 * 359.97438 * 9 6 5 11 11 C 1.37872 * 120.00736 * 179.97438 * 9 6 5 12 12 N 1.31523 * 119.99548 * 359.97438 * 11 9 6 13 13 Si 1.86793 * 120.00627 * 179.97438 * 11 9 6 14 14 H 1.48498 * 109.47202 * 90.00137 * 13 11 9 15 15 H 1.48501 * 109.47603 * 210.00337 * 13 11 9 16 16 H 1.48506 * 109.47086 * 329.99976 * 13 11 9 17 17 C 1.50697 * 109.46992 * 239.99806 * 2 1 3 18 18 C 1.38239 * 119.98964 * 239.72348 * 17 2 1 19 19 C 1.38218 * 120.00915 * 179.77166 * 18 17 2 20 20 C 1.38331 * 119.98961 * 0.50527 * 19 18 17 21 21 Br 1.89098 * 120.01022 * 179.72110 * 20 19 18 22 22 C 1.38325 * 119.97712 * 359.75153 * 20 19 18 23 23 C 1.38216 * 119.99127 * 359.97438 * 22 20 19 24 24 H 1.08997 * 109.46669 * 300.00058 * 1 2 3 25 25 H 1.08993 * 109.47109 * 59.99986 * 1 2 3 26 26 H 1.08995 * 109.46960 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46669 * 179.97438 * 3 2 1 28 28 H 1.08993 * 109.47210 * 299.99953 * 3 2 1 29 29 H 1.09004 * 109.47282 * 60.00137 * 3 2 1 30 30 H 1.00901 * 111.00067 * 63.95055 * 4 2 1 31 31 H 1.09001 * 109.46798 * 300.00327 * 5 4 2 32 32 H 1.08998 * 109.46961 * 60.00043 * 5 4 2 33 33 H 0.96709 * 113.99630 * 299.99873 * 8 6 5 34 34 H 0.97002 * 119.99722 * 180.02562 * 12 11 9 35 35 H 1.07999 * 119.99798 * 0.02562 * 18 17 2 36 36 H 1.08004 * 120.01090 * 180.23424 * 19 18 17 37 37 H 1.08007 * 120.00474 * 179.97438 * 22 20 19 38 38 H 1.08004 * 119.99257 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.5487 -0.0264 2.4211 6 6 2.0782 -0.7742 3.6463 7 1 3.1680 -0.7737 3.6293 8 8 1.6022 -2.1215 3.6245 9 6 1.5945 -0.0913 4.8995 10 1 0.9720 0.7885 4.8292 11 6 1.9466 -0.5895 6.1360 12 7 2.7042 -1.6611 6.2216 13 14 1.3476 0.2575 7.6894 14 1 0.0457 -0.3264 8.1009 15 1 2.3425 0.0628 8.7745 16 1 1.1785 1.7095 7.4278 17 6 2.0324 -0.7104 -1.2304 18 6 2.8318 -1.8310 -1.1033 19 6 3.2888 -2.4857 -2.2316 20 6 2.9548 -2.0133 -3.4881 21 35 3.5863 -2.9040 -5.0320 22 6 2.1592 -0.8889 -3.6147 23 6 1.6980 -0.2382 -2.4859 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9564 0.8900 30 1 1.7502 -1.6649 1.1909 31 1 1.9121 1.0011 2.4378 32 1 0.4588 -0.0266 2.4378 33 1 0.6382 -2.1983 3.6379 34 1 2.9516 -2.0119 7.0915 35 1 3.0960 -2.1974 -0.1223 36 1 3.9103 -3.3635 -2.1323 37 1 1.8984 -0.5194 -4.5955 38 1 1.0771 0.6400 -2.5847 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929885887.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:55 Heat of formation + Delta-G solvation = -45.185965 kcal Electronic energy + Delta-G solvation = -19914.538898 eV Core-core repulsion = 16802.051475 eV Total energy + Delta-G solvation = -3112.487422 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.94403 -38.74898 -37.12687 -34.24594 -33.41802 -32.30343 -31.68155 -29.55141 -29.39824 -28.19945 -26.27909 -23.77465 -23.49578 -22.20854 -20.30591 -18.91670 -18.21068 -16.73860 -16.58928 -16.47316 -16.18860 -15.90226 -15.32574 -15.05684 -14.91519 -14.51342 -14.32664 -14.14218 -13.77546 -13.60990 -13.21284 -12.95463 -12.83056 -12.79475 -12.62482 -12.43774 -12.14108 -12.01905 -11.94418 -11.64230 -11.53092 -11.22939 -10.98363 -10.69983 -10.14159 -9.94876 -9.53888 -9.16809 -8.12142 -6.37629 0.13004 0.38783 0.66326 1.40903 1.41894 1.52356 2.39338 2.66457 3.13753 3.25579 3.65399 3.88056 4.01109 4.13203 4.19864 4.32415 4.43557 4.49126 4.54164 4.62204 4.72292 4.75760 4.79487 4.92922 4.94910 5.05055 5.10801 5.23332 5.29748 5.35420 5.38500 5.59315 5.64975 5.78393 5.88173 6.05998 6.29991 6.56222 6.76989 7.35272 7.57122 8.92330 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.031433 B = 0.002535 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.569445 B =11043.468875 C =11663.756919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.144 3.856 3 C -0.133 4.133 4 N -0.681 5.681 5 C 0.055 3.945 6 C 0.232 3.768 7 H 0.020 0.980 8 O -0.578 6.578 9 C -0.585 4.585 10 H 0.060 0.940 11 C 0.025 3.975 12 N -0.899 5.899 13 Si 0.958 3.042 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.264 1.264 17 C -0.055 4.055 18 C -0.112 4.112 19 C -0.098 4.098 20 C -0.105 4.105 21 Br -0.054 7.054 22 C -0.091 4.091 23 C -0.108 4.108 24 H 0.057 0.943 25 H 0.082 0.918 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.083 0.917 29 H 0.055 0.945 30 H 0.341 0.659 31 H 0.067 0.933 32 H 0.031 0.969 33 H 0.353 0.647 34 H 0.260 0.740 35 H 0.129 0.871 36 H 0.136 0.864 37 H 0.151 0.849 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.801 1.742 -24.218 24.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.052 3.948 3 C -0.191 4.191 4 N -0.314 5.314 5 C -0.074 4.074 6 C 0.175 3.825 7 H 0.037 0.963 8 O -0.381 6.381 9 C -0.623 4.623 10 H 0.078 0.922 11 C -0.177 4.177 12 N -0.537 5.537 13 Si 0.783 3.217 14 H -0.198 1.198 15 H -0.211 1.211 16 H -0.189 1.189 17 C -0.055 4.055 18 C -0.131 4.131 19 C -0.118 4.118 20 C -0.185 4.185 21 Br 0.032 6.968 22 C -0.111 4.111 23 C -0.126 4.126 24 H 0.076 0.924 25 H 0.101 0.899 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.102 0.898 29 H 0.074 0.926 30 H 0.161 0.839 31 H 0.086 0.914 32 H 0.049 0.951 33 H 0.197 0.803 34 H 0.069 0.931 35 H 0.147 0.853 36 H 0.154 0.846 37 H 0.169 0.831 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -1.197 1.484 -24.701 24.775 hybrid contribution -1.511 0.138 1.630 2.227 sum -2.708 1.622 -23.071 23.286 Atomic orbital electron populations 1.22490 0.95198 1.02161 1.03187 1.19882 0.92962 0.94347 0.87567 1.21881 1.01251 0.93347 1.02592 1.60663 1.63429 1.06368 1.00896 1.22479 0.96858 0.98413 0.89654 1.19232 0.93424 0.79463 0.90401 0.96251 1.86528 1.24372 1.30232 1.96990 1.22038 1.33870 1.13741 0.92670 0.92195 1.25898 0.94255 0.95038 1.02558 1.70229 1.35745 1.22730 1.24951 0.85578 0.78081 0.79222 0.78793 1.19832 1.21114 1.18866 1.19998 0.96169 0.94822 0.94543 1.21211 0.97366 0.95659 0.98881 1.21242 0.99572 1.00181 0.90794 1.21907 1.04667 0.99803 0.92073 1.96683 1.87709 1.77689 1.34760 1.21287 0.95993 0.93540 1.00281 1.21177 1.00309 1.00705 0.90453 0.92370 0.89892 0.93059 0.93101 0.89832 0.92569 0.83914 0.91450 0.95069 0.80311 0.93096 0.85278 0.84644 0.83085 0.82932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.88 8.04 71.98 0.58 -3.30 16 2 C 0.14 3.67 0.79 2.78 0.00 3.67 16 3 C -0.13 -3.20 8.05 71.98 0.58 -2.62 16 4 N -0.68 -22.57 5.09 -473.89 -2.41 -24.99 16 5 C 0.05 2.12 4.54 86.30 0.39 2.51 16 6 C 0.23 11.64 3.10 29.85 0.09 11.73 16 7 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 8 O -0.58 -28.99 12.06 -148.98 -1.80 -30.78 16 9 C -0.58 -31.57 8.76 25.60 0.22 -31.34 16 10 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 11 C 0.02 1.38 5.40 84.65 0.46 1.84 16 12 N -0.90 -53.75 12.84 21.45 0.28 -53.48 16 13 Si 0.96 42.96 29.54 68.60 2.03 44.98 16 14 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 15 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 16 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 17 C -0.05 -1.30 4.77 -19.86 -0.09 -1.39 16 18 C -0.11 -2.92 9.14 22.27 0.20 -2.72 16 19 C -0.10 -2.30 9.79 22.29 0.22 -2.08 16 20 C -0.11 -2.22 6.22 22.31 0.14 -2.09 16 21 Br -0.05 -1.01 33.70 -20.37 -0.69 -1.70 16 22 C -0.09 -1.68 9.79 22.29 0.22 -1.47 16 23 C -0.11 -2.03 8.71 22.26 0.19 -1.84 16 24 H 0.06 1.43 6.40 -2.39 -0.02 1.41 16 25 H 0.08 1.44 7.39 -2.39 -0.02 1.42 16 26 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.05 1.35 8.14 -2.39 -0.02 1.34 16 28 H 0.08 1.50 7.39 -2.39 -0.02 1.48 16 29 H 0.06 1.44 6.40 -2.38 -0.02 1.43 16 30 H 0.34 11.66 6.96 -89.69 -0.62 11.04 16 31 H 0.07 2.61 6.30 -2.39 -0.02 2.59 16 32 H 0.03 1.15 6.30 -2.39 -0.02 1.13 16 33 H 0.35 15.55 9.04 -74.05 -0.67 14.88 16 34 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 35 H 0.13 3.79 6.41 -2.91 -0.02 3.77 16 36 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 37 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 38 H 0.15 2.09 7.10 -2.91 -0.02 2.07 16 Total: -1.00 -62.39 327.96 0.40 -61.98 By element: Atomic # 1 Polarization: 33.28 SS G_CDS: -0.21 Total: 33.07 kcal Atomic # 6 Polarization: -32.30 SS G_CDS: 3.20 Total: -29.09 kcal Atomic # 7 Polarization: -76.33 SS G_CDS: -2.14 Total: -78.46 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -1.80 Total: -30.78 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 35 Polarization: -1.01 SS G_CDS: -0.69 Total: -1.70 kcal Total: -62.39 0.40 -61.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929885887.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.796 kcal (2) G-P(sol) polarization free energy of solvation -62.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds