Wall clock time and date at job start Tue Mar 31 2020 15:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34962 * 125.97410 * 124.71196 * 10 9 7 12 12 C 1.35241 * 107.86078 * 179.83477 * 11 10 9 13 13 C 1.40421 * 107.86585 * 0.42772 * 12 11 10 14 14 N 1.40109 * 125.97270 * 179.70391 * 13 12 11 15 15 C 1.34779 * 120.00233 * 0.02562 * 14 13 12 16 16 O 1.21649 * 119.99935 * 0.02562 * 15 14 13 17 17 C 1.47172 * 119.99830 * 180.02562 * 15 14 13 18 18 C 1.44425 * 123.46240 * 359.70173 * 17 15 14 19 19 C 1.32779 * 113.08165 * 179.81298 * 18 17 15 20 20 S 1.75501 * 110.57646 * 0.44172 * 19 18 17 21 21 C 1.36016 * 123.45842 * 179.97438 * 17 15 14 22 22 C 1.50697 * 124.59539 * 359.97438 * 21 17 15 23 23 F 1.39904 * 109.46786 * 299.99303 * 22 21 17 24 24 F 1.39892 * 109.47594 * 59.99438 * 22 21 17 25 25 N 1.31226 * 108.04953 * 359.73570 * 13 12 11 26 26 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 28 28 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 29 29 H 1.07995 * 126.07118 * 359.97438 * 11 10 9 30 30 H 1.07997 * 126.06717 * 180.12300 * 12 11 10 31 31 H 0.97002 * 119.99510 * 180.02562 * 14 13 12 32 32 H 1.07998 * 123.46313 * 0.02562 * 18 17 15 33 33 H 1.07999 * 124.70868 * 180.15243 * 19 18 17 34 34 H 1.09004 * 109.47602 * 179.97438 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2488 -4.6214 0.8836 12 6 3.2625 -5.4440 0.5302 13 6 3.8668 -4.9132 -0.6208 14 7 4.9603 -5.4618 -1.3037 15 6 5.5265 -6.6028 -0.8632 16 8 5.0878 -7.1567 0.1270 17 6 6.6755 -7.1786 -1.5803 18 6 7.2519 -6.5879 -2.7655 19 6 8.2830 -7.2760 -3.2413 20 16 8.5851 -8.6957 -2.2548 21 6 7.3002 -8.3248 -1.1980 22 6 6.9093 -9.1544 -0.0023 23 9 7.0155 -8.3796 1.1577 24 9 5.5893 -9.5934 -0.1506 25 7 3.2287 -3.8132 -0.9445 26 1 -0.4850 -0.8400 0.0004 27 1 0.6281 -2.5591 0.8866 28 1 0.6207 -2.5548 -0.8933 29 1 1.5912 -4.7503 1.7305 30 1 3.5582 -6.3462 1.0450 31 1 5.3099 -5.0203 -2.0935 32 1 6.8844 -5.6780 -3.2164 33 1 8.8534 -7.0026 -4.1166 34 1 7.5720 -10.0165 0.0743 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933104799.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:56 Heat of formation + Delta-G solvation = -15.075831 kcal Electronic energy + Delta-G solvation = -24525.297483 eV Core-core repulsion = 20415.959267 eV Total energy + Delta-G solvation = -4109.338216 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.059 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.95535 -46.96006 -40.81846 -39.64011 -37.28202 -34.91943 -33.66984 -31.45948 -30.95075 -29.38541 -27.52979 -26.09152 -24.18290 -22.97341 -22.24295 -20.94696 -20.20653 -19.16804 -18.79788 -17.44969 -17.24754 -17.18228 -16.78276 -16.15073 -15.83882 -15.34606 -15.17644 -14.74813 -14.16058 -13.91871 -13.79897 -13.73088 -13.30674 -13.24177 -13.11016 -13.05814 -12.57898 -12.43396 -12.22001 -11.83461 -11.61938 -11.43947 -11.15685 -10.81185 -10.46836 -10.17842 -10.10523 -9.70494 -9.64442 -9.03097 -8.95223 -8.57899 -8.20226 -7.51875 -6.58220 -4.32224 0.09351 0.84105 1.26975 1.49713 2.60425 2.70592 3.04892 3.36801 3.40477 3.40879 3.57271 3.73525 3.76950 3.84200 4.31400 4.40823 4.40944 4.73702 4.82016 4.89186 5.15625 5.23962 5.42146 5.49196 5.63586 5.72617 6.16759 6.42439 6.50886 6.60581 6.75311 7.30736 7.46678 7.69893 7.83538 8.15093 8.34793 8.53383 8.61971 9.36091 10.79460 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.021431 B = 0.002777 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.218470 B =10081.700157 C =10887.496520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.023 3.977 3 Si 1.079 2.921 4 H -0.285 1.285 5 H -0.287 1.287 6 H -0.282 1.282 7 C -0.608 4.608 8 H 0.064 0.936 9 C 0.249 3.751 10 N -0.317 5.317 11 C 0.051 3.949 12 C -0.281 4.281 13 C 0.260 3.740 14 N -0.621 5.621 15 C 0.573 3.427 16 O -0.491 6.491 17 C -0.103 4.103 18 C -0.114 4.114 19 C -0.212 4.212 20 S 0.230 5.770 21 C -0.258 4.258 22 C 0.356 3.644 23 F -0.180 7.180 24 F -0.181 7.181 25 N -0.301 5.301 26 H 0.267 0.733 27 H 0.046 0.954 28 H 0.035 0.965 29 H 0.168 0.832 30 H 0.163 0.837 31 H 0.410 0.590 32 H 0.158 0.842 33 H 0.178 0.822 34 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.580 -19.752 -5.631 27.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.182 4.182 3 Si 0.907 3.093 4 H -0.212 1.212 5 H -0.212 1.212 6 H -0.207 1.207 7 C -0.646 4.646 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.098 5.098 11 C -0.099 4.099 12 C -0.313 4.313 13 C 0.006 3.994 14 N -0.269 5.269 15 C 0.357 3.643 16 O -0.364 6.364 17 C -0.122 4.122 18 C -0.142 4.142 19 C -0.348 4.348 20 S 0.497 5.503 21 C -0.379 4.379 22 C 0.301 3.699 23 F -0.161 7.161 24 F -0.162 7.162 25 N -0.132 5.132 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.186 0.814 30 H 0.180 0.820 31 H 0.246 0.754 32 H 0.176 0.824 33 H 0.196 0.804 34 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 18.941 -18.613 -5.796 27.181 hybrid contribution -0.790 -0.724 0.192 1.089 sum 18.151 -19.337 -5.603 27.107 Atomic orbital electron populations 1.70820 1.06786 1.30476 1.46033 1.25927 0.96316 1.02815 0.93141 0.83382 0.74674 0.74314 0.76974 1.21195 1.21248 1.20711 1.22135 0.95421 0.90421 1.56617 0.91789 1.19769 0.86311 0.82829 0.98008 1.48784 1.23323 1.19529 1.18195 1.22564 1.00487 0.90119 0.96708 1.21557 1.02035 1.06272 1.01399 1.19029 0.91366 0.94268 0.94703 1.42174 1.29927 1.24561 1.30232 1.17406 0.82369 0.80181 0.84324 1.90821 1.61613 1.59582 1.24412 1.20176 0.98578 0.95919 0.97555 1.21339 0.96408 1.01589 0.94913 1.25617 1.03534 0.99804 1.05830 1.82906 1.26531 1.23844 1.17012 1.25212 1.05232 1.02286 1.05142 1.19378 0.81801 0.89552 0.79198 1.93082 1.95974 1.77447 1.49631 1.93074 1.38059 1.89477 1.95566 1.77343 1.03561 1.16142 1.16131 0.92229 0.93592 0.94744 0.81434 0.81998 0.75437 0.82414 0.80423 0.86838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.51 13.65 55.43 0.76 -25.75 16 2 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 3 Si 1.08 25.08 29.90 -169.99 -5.08 20.00 16 4 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.61 -17.23 9.24 -34.44 -0.32 -17.55 16 8 H 0.06 1.90 7.81 -52.49 -0.41 1.49 16 9 C 0.25 6.37 5.57 -5.19 -0.03 6.34 16 10 N -0.32 -7.53 3.67 -62.56 -0.23 -7.76 16 11 C 0.05 1.05 11.43 -17.24 -0.20 0.85 16 12 C -0.28 -5.78 9.61 -39.83 -0.38 -6.16 16 13 C 0.26 5.37 8.11 -154.43 -1.25 4.12 16 14 N -0.62 -10.11 5.43 -12.17 -0.07 -10.18 16 15 C 0.57 9.02 7.72 -12.63 -0.10 8.92 16 16 O -0.49 -9.06 9.89 5.23 0.05 -9.01 16 17 C -0.10 -1.21 5.98 -104.63 -0.63 -1.83 16 18 C -0.11 -0.95 9.91 -39.02 -0.39 -1.33 16 19 C -0.21 -1.29 11.12 28.86 0.32 -0.97 16 20 S 0.23 1.40 22.95 -107.50 -2.47 -1.07 16 21 C -0.26 -2.63 5.78 -35.11 -0.20 -2.84 16 22 C 0.36 3.86 5.03 36.00 0.18 4.05 16 23 F -0.18 -2.52 15.71 2.25 0.04 -2.48 16 24 F -0.18 -2.49 15.71 2.25 0.04 -2.46 16 25 N -0.30 -7.08 12.42 31.43 0.39 -6.69 16 26 H 0.27 7.66 7.22 -40.82 -0.29 7.36 16 27 H 0.05 1.14 7.94 -51.93 -0.41 0.72 16 28 H 0.03 0.92 8.00 -51.93 -0.42 0.50 16 29 H 0.17 2.82 8.06 -52.49 -0.42 2.40 16 30 H 0.16 3.26 5.91 -52.49 -0.31 2.95 16 31 H 0.41 5.38 7.37 -40.82 -0.30 5.08 16 32 H 0.16 1.02 7.10 -52.49 -0.37 0.65 16 33 H 0.18 0.55 8.06 -52.49 -0.42 0.13 16 34 H 0.11 0.69 8.12 -51.93 -0.42 0.27 16 LS Contribution 321.18 15.07 4.84 4.84 Total: -1.00 -35.55 321.18 -7.40 -42.95 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -2.58 Total: 3.47 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -3.09 Total: -5.87 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: 0.85 Total: -50.37 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.05 Total: -9.01 kcal Atomic # 9 Polarization: -5.01 SS G_CDS: 0.07 Total: -4.94 kcal Atomic # 14 Polarization: 25.08 SS G_CDS: -5.08 Total: 20.00 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -2.47 Total: -1.07 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -35.55 -7.40 -42.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933104799.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.871 kcal (2) G-P(sol) polarization free energy of solvation -35.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds