Wall clock time and date at job start Tue Mar 31 2020 15:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34962 * 125.97410 * 124.71196 * 10 9 7 12 12 C 1.35241 * 107.86078 * 179.83477 * 11 10 9 13 13 C 1.40421 * 107.86585 * 0.42772 * 12 11 10 14 14 N 1.40109 * 125.97270 * 179.70391 * 13 12 11 15 15 C 1.34779 * 120.00233 * 0.02562 * 14 13 12 16 16 O 1.21649 * 119.99935 * 0.02562 * 15 14 13 17 17 C 1.47172 * 119.99830 * 180.02562 * 15 14 13 18 18 C 1.44425 * 123.46240 * 359.70173 * 17 15 14 19 19 C 1.32779 * 113.08165 * 179.81298 * 18 17 15 20 20 S 1.75501 * 110.57646 * 0.44172 * 19 18 17 21 21 C 1.36016 * 123.45842 * 179.97438 * 17 15 14 22 22 C 1.50697 * 124.59539 * 359.97438 * 21 17 15 23 23 F 1.39904 * 109.46786 * 299.99303 * 22 21 17 24 24 F 1.39892 * 109.47594 * 59.99438 * 22 21 17 25 25 N 1.31226 * 108.04953 * 359.73570 * 13 12 11 26 26 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 28 28 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 29 29 H 1.07995 * 126.07118 * 359.97438 * 11 10 9 30 30 H 1.07997 * 126.06717 * 180.12300 * 12 11 10 31 31 H 0.97002 * 119.99510 * 180.02562 * 14 13 12 32 32 H 1.07998 * 123.46313 * 0.02562 * 18 17 15 33 33 H 1.07999 * 124.70868 * 180.15243 * 19 18 17 34 34 H 1.09004 * 109.47602 * 179.97438 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2488 -4.6214 0.8836 12 6 3.2625 -5.4440 0.5302 13 6 3.8668 -4.9132 -0.6208 14 7 4.9603 -5.4618 -1.3037 15 6 5.5265 -6.6028 -0.8632 16 8 5.0878 -7.1567 0.1270 17 6 6.6755 -7.1786 -1.5803 18 6 7.2519 -6.5879 -2.7655 19 6 8.2830 -7.2760 -3.2413 20 16 8.5851 -8.6957 -2.2548 21 6 7.3002 -8.3248 -1.1980 22 6 6.9093 -9.1544 -0.0023 23 9 7.0155 -8.3796 1.1577 24 9 5.5893 -9.5934 -0.1506 25 7 3.2287 -3.8132 -0.9445 26 1 -0.4850 -0.8400 0.0004 27 1 0.6281 -2.5591 0.8866 28 1 0.6207 -2.5548 -0.8933 29 1 1.5912 -4.7503 1.7305 30 1 3.5582 -6.3462 1.0450 31 1 5.3099 -5.0203 -2.0935 32 1 6.8844 -5.6780 -3.2164 33 1 8.8534 -7.0026 -4.1166 34 1 7.5720 -10.0165 0.0743 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933104799.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:52 Heat of formation + Delta-G solvation = -38.090995 kcal Electronic energy + Delta-G solvation = -24526.295495 eV Core-core repulsion = 20415.959267 eV Total energy + Delta-G solvation = -4110.336228 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.059 amu Computer time = 6.42 seconds Orbital eigenvalues (eV) -49.87073 -47.90954 -42.36794 -40.90638 -38.10967 -36.49323 -35.57801 -32.77275 -32.13847 -31.07654 -28.79574 -27.64941 -25.45252 -24.56663 -23.24842 -22.33865 -21.69041 -20.35493 -19.52983 -19.26336 -18.58855 -18.16861 -18.02882 -17.16453 -17.09863 -16.66443 -16.32540 -15.90420 -15.75754 -15.56139 -15.07818 -14.79512 -14.72745 -14.26398 -14.25057 -14.01699 -13.83746 -13.78103 -13.72072 -13.34127 -13.23163 -12.61416 -12.30284 -12.13868 -12.06087 -11.98079 -11.71166 -11.07639 -11.02252 -10.70277 -10.25452 -9.89331 -9.56789 -9.21845 -8.79607 -6.57735 -0.65567 0.24901 0.68772 0.70129 1.06278 1.26552 1.49865 1.57649 1.70512 1.77916 2.23467 2.32589 2.47773 2.72857 2.99720 3.14453 3.44549 3.64498 3.82303 3.96692 4.07035 4.10935 4.24977 4.52396 4.61060 4.72011 4.76967 4.79238 4.89992 5.05107 5.07305 5.52933 5.76285 5.89182 6.12016 6.24043 6.39318 6.84928 6.96598 7.18127 8.56740 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.021431 B = 0.002777 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.218470 B =10081.700157 C =10887.496520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.019 4.019 3 Si 1.123 2.877 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.274 1.274 7 C -0.622 4.622 8 H 0.045 0.955 9 C 0.259 3.741 10 N -0.341 5.341 11 C 0.057 3.943 12 C -0.290 4.290 13 C 0.268 3.732 14 N -0.617 5.617 15 C 0.570 3.430 16 O -0.525 6.525 17 C -0.136 4.136 18 C -0.130 4.130 19 C -0.203 4.203 20 S 0.321 5.679 21 C -0.280 4.280 22 C 0.339 3.661 23 F -0.204 7.204 24 F -0.204 7.204 25 N -0.341 5.341 26 H 0.261 0.739 27 H 0.054 0.946 28 H 0.018 0.982 29 H 0.203 0.797 30 H 0.166 0.834 31 H 0.423 0.577 32 H 0.169 0.831 33 H 0.215 0.785 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.369 -20.716 -6.694 30.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.218 4.218 3 Si 0.944 3.056 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.199 1.199 7 C -0.660 4.660 8 H 0.063 0.937 9 C 0.140 3.860 10 N -0.123 5.123 11 C -0.091 4.091 12 C -0.321 4.321 13 C 0.014 3.986 14 N -0.267 5.267 15 C 0.357 3.643 16 O -0.401 6.401 17 C -0.156 4.156 18 C -0.157 4.157 19 C -0.338 4.338 20 S 0.590 5.410 21 C -0.401 4.401 22 C 0.285 3.715 23 F -0.185 7.185 24 F -0.185 7.185 25 N -0.172 5.172 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.036 0.964 29 H 0.219 0.781 30 H 0.184 0.816 31 H 0.261 0.739 32 H 0.187 0.813 33 H 0.231 0.769 34 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 21.757 -19.615 -6.879 30.091 hybrid contribution -1.495 -0.655 0.475 1.700 sum 20.262 -20.270 -6.404 29.368 Atomic orbital electron populations 1.70915 1.07448 1.30221 1.47347 1.27301 0.96432 1.06091 0.91995 0.82840 0.73852 0.70906 0.78039 1.19382 1.20479 1.19937 1.22306 0.94676 0.92101 1.56929 0.93689 1.19449 0.86390 0.82746 0.97433 1.48588 1.23996 1.20141 1.19604 1.23160 1.00541 0.88752 0.96682 1.21721 1.02269 1.06474 1.01655 1.19380 0.91552 0.93179 0.94512 1.42317 1.28855 1.24965 1.30516 1.18155 0.82875 0.79290 0.84020 1.90781 1.62891 1.60328 1.26052 1.20042 0.98515 0.97544 0.99547 1.21391 0.97420 1.02645 0.94242 1.26123 1.02357 0.99091 1.06246 1.82637 1.22429 1.22084 1.13893 1.25525 1.06884 1.01882 1.05813 1.20156 0.81510 0.91104 0.78768 1.93023 1.96000 1.78352 1.51174 1.93017 1.40101 1.89729 1.95648 1.77261 1.04723 1.17927 1.17337 0.92932 0.92791 0.96429 0.78065 0.81628 0.73870 0.81349 0.76856 0.81787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.48 13.65 21.45 0.29 -54.19 16 2 C -0.02 -1.05 5.46 84.65 0.46 -0.59 16 3 Si 1.12 50.21 29.90 68.60 2.05 52.26 16 4 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 7 C -0.62 -36.00 9.24 25.60 0.24 -35.76 16 8 H 0.04 2.73 7.81 -2.91 -0.02 2.71 16 9 C 0.26 13.63 5.57 85.64 0.48 14.11 16 10 N -0.34 -16.63 3.67 -351.84 -1.29 -17.92 16 11 C 0.06 2.36 11.43 83.52 0.96 3.32 16 12 C -0.29 -12.15 9.61 22.11 0.21 -11.94 16 13 C 0.27 11.39 8.11 133.34 1.08 12.47 16 14 N -0.62 -20.48 5.43 -310.66 -1.69 -22.17 16 15 C 0.57 18.24 7.72 86.59 0.67 18.91 16 16 O -0.52 -19.97 9.89 -4.19 -0.04 -20.01 16 17 C -0.14 -3.08 5.98 -19.87 -0.12 -3.20 16 18 C -0.13 -1.88 9.91 22.67 0.22 -1.65 16 19 C -0.20 -1.63 11.12 66.64 0.74 -0.89 16 20 S 0.32 2.60 22.95 -56.49 -1.30 1.30 16 21 C -0.28 -5.21 5.78 25.17 0.15 -5.07 16 22 C 0.34 7.01 5.03 71.23 0.36 7.37 16 23 F -0.20 -5.75 15.71 44.97 0.71 -5.04 16 24 F -0.20 -5.66 15.71 44.97 0.71 -4.96 16 25 N -0.34 -16.55 12.42 -54.47 -0.68 -17.23 16 26 H 0.26 15.25 7.22 -92.71 -0.67 14.58 16 27 H 0.05 2.72 7.94 -2.39 -0.02 2.70 16 28 H 0.02 0.98 8.00 -2.39 -0.02 0.96 16 29 H 0.20 6.64 8.06 -2.91 -0.02 6.61 16 30 H 0.17 6.84 5.91 -2.91 -0.02 6.83 16 31 H 0.42 11.26 7.37 -92.71 -0.68 10.58 16 32 H 0.17 1.90 7.10 -2.91 -0.02 1.88 16 33 H 0.21 0.15 8.06 -2.91 -0.02 0.13 16 34 H 0.17 1.56 8.12 -2.39 -0.02 1.54 16 Total: -1.00 -80.21 321.18 4.81 -75.40 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.60 Total: 15.49 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: 5.44 Total: -2.93 kcal Atomic # 7 Polarization: -108.15 SS G_CDS: -3.36 Total: -111.51 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.04 Total: -20.01 kcal Atomic # 9 Polarization: -11.41 SS G_CDS: 1.41 Total: -10.00 kcal Atomic # 14 Polarization: 50.21 SS G_CDS: 2.05 Total: 52.26 kcal Atomic # 16 Polarization: 2.60 SS G_CDS: -1.30 Total: 1.30 kcal Total: -80.21 4.81 -75.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933104799.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.304 kcal (2) G-P(sol) polarization free energy of solvation -80.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.42 seconds