Wall clock time and date at job start Tue Mar 31 2020 15:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30944 * 122.89821 * 2 1 4 4 C 1.29585 * 117.32339 * 180.31419 * 3 2 1 5 5 Cl 1.73601 * 124.81003 * 179.75303 * 4 3 2 6 6 S 1.70955 * 110.38046 * 359.72787 * 4 3 2 7 7 C 1.35668 * 122.89574 * 179.81407 * 2 1 3 8 8 C 1.46583 * 126.11758 * 359.97438 * 7 2 1 9 9 O 1.21707 * 119.99939 * 359.71503 * 8 7 2 10 10 N 1.34775 * 120.00435 * 179.71731 * 8 7 2 11 11 C 1.46488 * 120.00442 * 180.02562 * 10 8 7 12 12 H 1.09000 * 115.49744 * 9.61753 * 11 10 8 13 13 C 1.53009 * 117.44481 * 224.23917 * 11 10 8 14 14 H 1.08993 * 120.25863 * 3.82260 * 13 11 10 15 15 C 1.54389 * 118.12379 * 160.80868 * 13 11 10 16 16 N 1.48146 * 104.61637 * 87.18713 * 15 13 11 17 17 C 1.36945 * 127.83404 * 140.41033 * 16 15 13 18 18 H 1.07998 * 119.99727 * 195.58011 * 17 16 15 19 19 C 1.38807 * 119.99811 * 15.57819 * 17 16 15 20 20 N 1.31626 * 120.00108 * 9.09914 * 19 17 16 21 21 Si 1.86803 * 119.99979 * 189.09418 * 19 17 16 22 22 H 1.48497 * 109.47122 * 90.00043 * 21 19 17 23 23 H 1.48496 * 109.47127 * 210.00491 * 21 19 17 24 24 H 1.48504 * 109.46888 * 330.00173 * 21 19 17 25 25 C 1.47251 * 104.78176 * 321.14769 * 16 15 13 26 26 C 1.53000 * 117.44573 * 154.99735 * 11 10 8 27 27 H 1.09004 * 119.53583 * 355.88334 * 26 11 10 28 28 H 1.09006 * 109.46786 * 270.18937 * 1 2 3 29 29 H 1.08997 * 109.47088 * 30.18591 * 1 2 3 30 30 H 1.09001 * 109.47573 * 150.19016 * 1 2 3 31 31 H 0.97005 * 119.99118 * 359.97438 * 10 8 7 32 32 H 1.08995 * 110.40370 * 205.97531 * 15 13 11 33 33 H 1.09003 * 110.40474 * 328.40622 * 15 13 11 34 34 H 0.96998 * 119.99844 * 179.97438 * 20 19 17 35 35 H 1.09000 * 109.08836 * 279.97897 * 25 16 15 36 36 H 1.09001 * 111.30192 * 157.84811 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2182 1.0995 0.0000 4 6 3.5079 0.9736 -0.0063 5 17 4.6326 2.2959 -0.0137 6 16 3.9448 -0.6792 -0.0056 7 6 2.2438 -1.1391 0.0037 8 6 1.7188 -2.5077 0.0087 9 8 0.5168 -2.6984 0.0150 10 7 2.5671 -3.5550 0.0062 11 6 2.0425 -4.9227 0.0106 12 1 0.9680 -5.0136 -0.1486 13 6 2.7026 -5.9282 0.9564 14 1 3.4884 -5.6057 1.6393 15 6 1.9194 -7.2082 1.3196 16 7 2.2572 -8.1707 0.2453 17 6 2.4993 -9.5131 0.3658 18 1 2.9755 -10.0505 -0.4410 19 6 2.1328 -10.1831 1.5249 20 7 1.3961 -9.5759 2.4311 21 14 2.6850 -11.9465 1.7988 22 1 3.9913 -11.9522 2.5050 23 1 1.6747 -12.6596 2.6209 24 1 2.8280 -12.6296 0.4880 25 6 2.2940 -7.3626 -0.9852 26 6 2.9361 -6.0227 -0.5658 27 1 3.8916 -5.7568 -1.0182 28 1 -0.3633 0.0034 1.0277 29 1 -0.3633 0.8883 -0.5167 30 1 -0.3634 -0.8917 -0.5109 31 1 3.5252 -3.4030 0.0008 32 1 2.2433 -7.5900 2.2877 33 1 0.8478 -7.0085 1.3280 34 1 1.1397 -10.0443 3.2409 35 1 1.2748 -7.2020 -1.3368 36 1 2.8921 -7.8452 -1.7581 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960103412.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:07 Heat of formation + Delta-G solvation = 70.320067 kcal Electronic energy + Delta-G solvation = -22121.709536 eV Core-core repulsion = 18567.871044 eV Total energy + Delta-G solvation = -3553.838492 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.055 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -40.77722 -39.65252 -38.34249 -37.49456 -34.68634 -32.83934 -32.08731 -30.48976 -28.61185 -27.22519 -25.72047 -25.31321 -22.99897 -21.28035 -20.63827 -19.68282 -19.37482 -18.94436 -17.32878 -16.87955 -16.52585 -15.99625 -15.80278 -14.77572 -14.64565 -14.43910 -14.18116 -13.70842 -13.38055 -13.26122 -12.84443 -12.78677 -12.31006 -12.12995 -12.03308 -11.79262 -11.69047 -11.53597 -11.03773 -10.86906 -10.51177 -10.48021 -10.28517 -10.20746 -10.05931 -10.03501 -9.79428 -9.27304 -9.23440 -8.80222 -8.47335 -6.91315 -5.83249 -3.17935 -0.36723 0.11169 0.92153 1.27547 1.91181 2.81948 2.84434 3.36269 3.41547 3.43690 3.89887 4.19037 4.41776 4.45732 4.63989 5.02127 5.24431 5.27445 5.32474 5.45063 5.49939 5.55043 5.77775 5.81547 5.91713 6.08797 6.15764 6.42554 6.61970 6.64697 6.82571 6.93195 7.27992 7.32217 7.49681 7.67721 7.94679 8.17367 9.07318 9.70614 10.45265 11.31146 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.029393 B = 0.002329 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.367252 B =12018.917776 C =12489.438833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.160 3.840 3 N -0.463 5.463 4 C 0.080 3.920 5 Cl 0.037 6.963 6 S 0.235 5.765 7 C -0.290 4.290 8 C 0.600 3.400 9 O -0.511 6.511 10 N -0.690 5.690 11 C 0.099 3.901 12 H 0.137 0.863 13 C -0.180 4.180 14 H 0.103 0.897 15 C 0.185 3.815 16 N -0.592 5.592 17 C -0.230 4.230 18 H 0.078 0.922 19 C -0.005 4.005 20 N -0.914 5.914 21 Si 0.913 3.087 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.159 3.841 26 C -0.183 4.183 27 H 0.103 0.897 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.106 0.894 31 H 0.395 0.605 32 H 0.092 0.908 33 H 0.028 0.972 34 H 0.255 0.745 35 H 0.026 0.974 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.329 22.447 -5.190 23.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.022 3.978 3 N -0.180 5.180 4 C -0.221 4.221 5 Cl 0.064 6.936 6 S 0.487 5.513 7 C -0.414 4.414 8 C 0.384 3.616 9 O -0.389 6.389 10 N -0.338 5.338 11 C -0.007 4.007 12 H 0.155 0.845 13 C -0.202 4.202 14 H 0.121 0.879 15 C 0.059 3.941 16 N -0.315 5.315 17 C -0.358 4.358 18 H 0.095 0.905 19 C -0.202 4.202 20 N -0.560 5.560 21 Si 0.743 3.257 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.032 3.968 26 C -0.205 4.205 27 H 0.121 0.879 28 H 0.105 0.895 29 H 0.096 0.904 30 H 0.124 0.876 31 H 0.229 0.771 32 H 0.110 0.890 33 H 0.046 0.954 34 H 0.065 0.935 35 H 0.043 0.957 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.320 22.208 -5.030 23.631 hybrid contribution 0.363 -0.331 0.265 0.558 sum 6.683 21.877 -4.765 23.366 Atomic orbital electron populations 1.20749 0.84954 1.04984 1.04304 1.20525 0.98769 0.83916 0.94569 1.65811 1.03311 1.32255 1.16664 1.27338 0.93096 0.95144 1.06522 1.98455 1.54410 1.44396 1.96308 1.84028 1.04715 0.97396 1.65137 1.25742 0.95898 0.99644 1.20160 1.16465 0.86305 0.81875 0.76923 1.90827 1.13951 1.84503 1.49591 1.45270 1.08987 1.05486 1.74036 1.21898 0.98194 0.76253 1.04313 0.84535 1.24768 1.03609 0.98988 0.92824 0.87865 1.21084 0.94881 0.83244 0.94876 1.44960 1.81500 1.04105 1.00952 1.19001 1.32667 0.82036 1.02131 0.90461 1.24899 0.98884 0.98321 0.98077 1.69896 1.38870 1.36815 1.10429 0.86104 0.77836 0.83886 0.77828 1.21506 1.21615 1.20512 1.20945 0.96979 0.88027 0.90860 1.24376 1.00592 0.96921 0.98571 0.87853 0.89517 0.90398 0.87574 0.77056 0.89008 0.95374 0.93472 0.95652 0.92788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.94 9.69 36.00 0.35 -0.59 16 2 C 0.16 1.84 6.79 -83.89 -0.57 1.27 16 3 N -0.46 -5.29 10.51 -8.63 -0.09 -5.38 16 4 C 0.08 0.77 8.03 51.81 0.42 1.19 16 5 Cl 0.04 0.29 29.33 -51.86 -1.52 -1.23 16 6 S 0.23 1.97 22.35 -107.50 -2.40 -0.43 16 7 C -0.29 -3.30 6.48 -37.14 -0.24 -3.54 16 8 C 0.60 8.17 7.77 -12.90 -0.10 8.07 16 9 O -0.51 -8.39 13.83 5.18 0.07 -8.32 16 10 N -0.69 -8.90 5.56 -55.15 -0.31 -9.20 16 11 C 0.10 1.57 6.00 -67.93 -0.41 1.16 16 12 H 0.14 2.43 7.40 -51.93 -0.38 2.05 16 13 C -0.18 -3.28 7.06 -89.21 -0.63 -3.91 16 14 H 0.10 1.74 8.14 -51.93 -0.42 1.31 16 15 C 0.19 4.35 5.72 -2.41 -0.01 4.33 16 16 N -0.59 -14.78 3.36 -169.59 -0.57 -15.35 16 17 C -0.23 -6.28 10.32 -15.06 -0.16 -6.43 16 18 H 0.08 2.03 7.84 -52.49 -0.41 1.62 16 19 C 0.00 -0.12 5.40 -17.43 -0.09 -0.22 16 20 N -0.91 -26.42 10.86 55.49 0.60 -25.81 16 21 Si 0.91 21.58 29.56 -169.99 -5.03 16.56 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 C 0.16 3.22 7.00 -2.90 -0.02 3.20 16 26 C -0.18 -3.06 7.03 -89.22 -0.63 -3.69 16 27 H 0.10 1.50 8.14 -51.93 -0.42 1.07 16 28 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.11 1.22 6.01 -51.93 -0.31 0.91 16 31 H 0.40 4.08 8.01 -40.82 -0.33 3.75 16 32 H 0.09 2.41 6.51 -51.93 -0.34 2.07 16 33 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 335.06 15.07 5.05 5.05 Total: -1.00 -30.79 335.06 -10.15 -40.94 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -3.87 Total: 2.33 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -2.09 Total: 0.85 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: -0.36 Total: -55.74 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: 0.07 Total: -8.32 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.56 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -2.40 Total: -0.43 kcal Atomic # 17 Polarization: 0.29 SS G_CDS: -1.52 Total: -1.23 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.79 -10.15 -40.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960103412.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.262 kcal (2) G-P(sol) polarization free energy of solvation -30.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds