Wall clock time and date at job start Tue Mar 31 2020 15:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30944 * 122.89821 * 2 1 4 4 C 1.29585 * 117.32339 * 180.31419 * 3 2 1 5 5 Cl 1.73601 * 124.81003 * 179.75303 * 4 3 2 6 6 S 1.70955 * 110.38046 * 359.72787 * 4 3 2 7 7 C 1.35668 * 122.89574 * 179.81407 * 2 1 3 8 8 C 1.46583 * 126.11758 * 359.97438 * 7 2 1 9 9 O 1.21707 * 119.99939 * 359.71503 * 8 7 2 10 10 N 1.34775 * 120.00435 * 179.71731 * 8 7 2 11 11 C 1.46488 * 120.00442 * 180.02562 * 10 8 7 12 12 H 1.09000 * 115.49744 * 9.61753 * 11 10 8 13 13 C 1.53009 * 117.44481 * 224.23917 * 11 10 8 14 14 H 1.08993 * 120.25863 * 3.82260 * 13 11 10 15 15 C 1.54389 * 118.12379 * 160.80868 * 13 11 10 16 16 N 1.48146 * 104.61637 * 87.18713 * 15 13 11 17 17 C 1.36945 * 127.83404 * 140.41033 * 16 15 13 18 18 H 1.07998 * 119.99727 * 195.58011 * 17 16 15 19 19 C 1.38807 * 119.99811 * 15.57819 * 17 16 15 20 20 N 1.31626 * 120.00108 * 9.09914 * 19 17 16 21 21 Si 1.86803 * 119.99979 * 189.09418 * 19 17 16 22 22 H 1.48497 * 109.47122 * 90.00043 * 21 19 17 23 23 H 1.48496 * 109.47127 * 210.00491 * 21 19 17 24 24 H 1.48504 * 109.46888 * 330.00173 * 21 19 17 25 25 C 1.47251 * 104.78176 * 321.14769 * 16 15 13 26 26 C 1.53000 * 117.44573 * 154.99735 * 11 10 8 27 27 H 1.09004 * 119.53583 * 355.88334 * 26 11 10 28 28 H 1.09006 * 109.46786 * 270.18937 * 1 2 3 29 29 H 1.08997 * 109.47088 * 30.18591 * 1 2 3 30 30 H 1.09001 * 109.47573 * 150.19016 * 1 2 3 31 31 H 0.97005 * 119.99118 * 359.97438 * 10 8 7 32 32 H 1.08995 * 110.40370 * 205.97531 * 15 13 11 33 33 H 1.09003 * 110.40474 * 328.40622 * 15 13 11 34 34 H 0.96998 * 119.99844 * 179.97438 * 20 19 17 35 35 H 1.09000 * 109.08836 * 279.97897 * 25 16 15 36 36 H 1.09001 * 111.30192 * 157.84811 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2182 1.0995 0.0000 4 6 3.5079 0.9736 -0.0063 5 17 4.6326 2.2959 -0.0137 6 16 3.9448 -0.6792 -0.0056 7 6 2.2438 -1.1391 0.0037 8 6 1.7188 -2.5077 0.0087 9 8 0.5168 -2.6984 0.0150 10 7 2.5671 -3.5550 0.0062 11 6 2.0425 -4.9227 0.0106 12 1 0.9680 -5.0136 -0.1486 13 6 2.7026 -5.9282 0.9564 14 1 3.4884 -5.6057 1.6393 15 6 1.9194 -7.2082 1.3196 16 7 2.2572 -8.1707 0.2453 17 6 2.4993 -9.5131 0.3658 18 1 2.9755 -10.0505 -0.4410 19 6 2.1328 -10.1831 1.5249 20 7 1.3961 -9.5759 2.4311 21 14 2.6850 -11.9465 1.7988 22 1 3.9913 -11.9522 2.5050 23 1 1.6747 -12.6596 2.6209 24 1 2.8280 -12.6296 0.4880 25 6 2.2940 -7.3626 -0.9852 26 6 2.9361 -6.0227 -0.5658 27 1 3.8916 -5.7568 -1.0182 28 1 -0.3633 0.0034 1.0277 29 1 -0.3633 0.8883 -0.5167 30 1 -0.3634 -0.8917 -0.5109 31 1 3.5252 -3.4030 0.0008 32 1 2.2433 -7.5900 2.2877 33 1 0.8478 -7.0085 1.3280 34 1 1.1397 -10.0443 3.2409 35 1 1.2748 -7.2020 -1.3368 36 1 2.8921 -7.8452 -1.7581 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960103412.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:05 Heat of formation + Delta-G solvation = 50.134121 kcal Electronic energy + Delta-G solvation = -22122.584864 eV Core-core repulsion = 18567.871044 eV Total energy + Delta-G solvation = -3554.713820 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.055 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -41.71062 -40.84708 -39.67986 -38.18471 -36.19821 -34.47093 -32.98154 -32.21037 -29.59265 -28.92947 -27.54056 -26.12155 -24.30067 -22.69972 -22.06072 -20.94851 -20.71966 -19.75028 -18.88124 -18.27040 -17.62182 -16.94042 -16.86731 -16.62745 -15.70598 -15.65491 -15.40123 -14.97895 -14.91046 -14.62703 -14.04270 -13.84579 -13.60859 -13.36305 -13.24557 -12.89286 -12.81382 -12.73127 -12.70440 -12.56056 -12.16864 -12.02833 -11.89429 -11.69887 -11.37538 -11.06370 -10.84504 -10.82040 -10.71818 -10.03312 -9.78558 -8.91400 -7.91141 -5.27777 -1.18043 -0.61428 0.13484 0.55370 1.04395 1.48071 1.49554 1.58750 1.69736 1.82100 2.49341 2.80611 3.11407 3.28408 3.47509 3.61276 3.79197 3.81541 3.88642 4.13144 4.38454 4.42125 4.51090 4.66616 4.70837 4.78879 4.87706 5.01390 5.20598 5.27438 5.36082 5.45147 5.52202 5.65125 6.11679 6.18372 6.27161 6.90888 7.01336 7.69361 8.45527 9.22915 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.029393 B = 0.002329 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.367252 B =12018.917776 C =12489.438833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.157 3.843 3 N -0.485 5.485 4 C 0.070 3.930 5 Cl 0.053 6.947 6 S 0.312 5.688 7 C -0.317 4.317 8 C 0.602 3.398 9 O -0.545 6.545 10 N -0.678 5.678 11 C 0.122 3.878 12 H 0.116 0.884 13 C -0.186 4.186 14 H 0.123 0.877 15 C 0.189 3.811 16 N -0.616 5.616 17 C -0.240 4.240 18 H 0.085 0.915 19 C -0.063 4.063 20 N -0.949 5.949 21 Si 0.981 3.019 22 H -0.284 1.284 23 H -0.297 1.297 24 H -0.266 1.266 25 C 0.151 3.849 26 C -0.159 4.159 27 H 0.142 0.858 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.412 0.588 32 H 0.057 0.943 33 H -0.003 1.003 34 H 0.250 0.750 35 H 0.018 0.982 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.808 23.722 -6.281 26.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.018 3.982 3 N -0.203 5.203 4 C -0.229 4.229 5 Cl 0.081 6.919 6 S 0.566 5.434 7 C -0.441 4.441 8 C 0.388 3.612 9 O -0.425 6.425 10 N -0.327 5.327 11 C 0.015 3.985 12 H 0.134 0.866 13 C -0.207 4.207 14 H 0.141 0.859 15 C 0.063 3.937 16 N -0.340 5.340 17 C -0.369 4.369 18 H 0.103 0.897 19 C -0.257 4.257 20 N -0.596 5.596 21 Si 0.809 3.191 22 H -0.211 1.211 23 H -0.223 1.223 24 H -0.191 1.191 25 C 0.025 3.975 26 C -0.180 4.180 27 H 0.159 0.841 28 H 0.107 0.893 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.249 0.751 32 H 0.076 0.924 33 H 0.015 0.985 34 H 0.059 0.941 35 H 0.036 0.964 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.857 23.521 -6.158 25.876 hybrid contribution -0.397 -0.630 0.555 0.929 sum 8.460 22.891 -5.602 25.039 Atomic orbital electron populations 1.20713 0.84885 1.04842 1.04417 1.20653 0.99225 0.84170 0.94166 1.65855 1.04142 1.32341 1.17960 1.27676 0.93157 0.96621 1.05453 1.98466 1.53483 1.43861 1.96109 1.83706 1.01207 0.95315 1.63194 1.25521 0.98378 0.98226 1.21988 1.16704 0.85854 0.82680 0.75926 1.90821 1.15527 1.85194 1.50910 1.45013 1.09852 1.03928 1.73918 1.21425 0.97206 0.77577 1.02278 0.86647 1.24433 1.04009 0.98028 0.94273 0.85881 1.20789 0.93803 0.85673 0.93446 1.45252 1.81593 1.04145 1.03014 1.19411 1.31849 0.83454 1.02195 0.89744 1.25754 0.99448 1.02404 0.98098 1.70103 1.40498 1.38264 1.10769 0.85048 0.76996 0.79153 0.77940 1.21081 1.22338 1.19080 1.21108 0.97272 0.89461 0.89684 1.24280 1.01657 0.95311 0.96763 0.84060 0.89283 0.89116 0.89027 0.75088 0.92429 0.98468 0.94141 0.96397 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.83 9.69 71.23 0.69 -1.14 16 2 C 0.16 3.43 6.79 42.09 0.29 3.71 16 3 N -0.48 -10.24 10.51 -181.21 -1.90 -12.14 16 4 C 0.07 1.19 8.03 130.57 1.05 2.24 16 5 Cl 0.05 0.70 29.33 -2.72 -0.08 0.62 16 6 S 0.31 4.26 22.35 -56.49 -1.26 3.00 16 7 C -0.32 -6.64 6.48 23.85 0.15 -6.49 16 8 C 0.60 15.65 7.77 86.42 0.67 16.32 16 9 O -0.55 -17.94 13.83 -4.37 -0.06 -18.00 16 10 N -0.68 -15.91 5.56 -446.59 -2.48 -18.39 16 11 C 0.12 3.72 6.00 45.00 0.27 3.99 16 12 H 0.12 4.15 7.40 -2.39 -0.02 4.13 16 13 C -0.19 -6.59 7.06 -9.88 -0.07 -6.66 16 14 H 0.12 3.89 8.14 -2.39 -0.02 3.87 16 15 C 0.19 9.18 5.72 86.53 0.49 9.68 16 16 N -0.62 -31.14 3.36 -690.45 -2.32 -33.46 16 17 C -0.24 -13.20 10.32 84.03 0.87 -12.34 16 18 H 0.08 4.39 7.84 -2.91 -0.02 4.37 16 19 C -0.06 -3.56 5.40 84.86 0.46 -3.10 16 20 N -0.95 -56.85 10.86 21.65 0.24 -56.62 16 21 Si 0.98 44.87 29.56 68.60 2.03 46.89 16 22 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 23 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 24 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 25 C 0.15 5.96 7.00 86.71 0.61 6.57 16 26 C -0.16 -4.94 7.03 -9.88 -0.07 -5.01 16 27 H 0.14 3.40 8.14 -2.38 -0.02 3.38 16 28 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 29 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.09 2.15 6.01 -2.39 -0.01 2.14 16 31 H 0.41 6.96 8.01 -92.70 -0.74 6.22 16 32 H 0.06 3.17 6.51 -2.39 -0.02 3.15 16 33 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 34 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 35 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -68.81 335.06 -0.03 -68.85 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: 0.40 Total: 11.47 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: 5.41 Total: 7.78 kcal Atomic # 7 Polarization: -114.14 SS G_CDS: -6.47 Total: -120.61 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.06 Total: -18.00 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Atomic # 16 Polarization: 4.26 SS G_CDS: -1.26 Total: 3.00 kcal Atomic # 17 Polarization: 0.70 SS G_CDS: -0.08 Total: 0.62 kcal Total: -68.81 -0.03 -68.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960103412.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.980 kcal (2) G-P(sol) polarization free energy of solvation -68.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds