Wall clock time and date at job start Tue Mar 31 2020 15:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 120.00137 * 2 1 4 4 H 1.48495 * 109.46984 * 239.99671 * 3 2 1 5 5 H 1.48500 * 109.46904 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47058 * 119.99430 * 3 2 1 7 7 C 1.38810 * 119.99875 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00327 * 164.52980 * 7 2 1 9 9 N 1.36939 * 120.00352 * 344.52484 * 7 2 1 10 10 C 1.47010 * 121.37262 * 335.97266 * 9 7 2 11 11 C 1.50319 * 109.16396 * 222.96294 * 10 9 7 12 12 C 1.29457 * 123.65117 * 349.28755 * 11 10 9 13 13 C 1.50694 * 117.69284 * 180.57773 * 12 11 10 14 14 N 1.46502 * 109.47861 * 94.99351 * 13 12 11 15 15 C 1.34772 * 120.00569 * 179.97438 * 14 13 12 16 16 O 1.21709 * 120.00083 * 0.02562 * 15 14 13 17 17 C 1.46518 * 120.00117 * 179.97438 * 15 14 13 18 18 S 1.76209 * 126.17786 * 359.69011 * 17 15 14 19 19 C 1.70915 * 90.39149 * 179.97438 * 18 17 15 20 20 N 1.29366 * 110.61856 * 0.35027 * 19 18 17 21 21 C 1.31038 * 117.45514 * 359.72286 * 20 19 18 22 22 Cl 1.73594 * 123.05626 * 180.02562 * 21 20 19 23 23 C 1.49964 * 124.61613 * 0.32872 * 12 11 10 24 24 C 1.47338 * 121.37669 * 155.98495 * 9 7 2 25 25 H 0.97002 * 119.99820 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.52256 * 103.05651 * 10 9 7 27 27 H 1.08999 * 109.52111 * 342.87265 * 10 9 7 28 28 H 1.08003 * 118.17335 * 168.99584 * 11 10 9 29 29 H 1.09006 * 109.47402 * 214.99724 * 13 12 11 30 30 H 1.09004 * 109.47463 * 334.99170 * 13 12 11 31 31 H 0.96998 * 119.99289 * 0.02562 * 14 13 12 32 32 H 1.08004 * 124.69473 * 180.02562 * 19 18 17 33 33 H 1.08995 * 109.43781 * 221.06658 * 23 12 11 34 34 H 1.09004 * 109.12988 * 101.67266 * 23 12 11 35 35 H 1.09002 * 109.78070 * 237.79078 * 24 9 7 36 36 H 1.09002 * 109.77840 * 358.60673 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0609 -1.2193 -0.2489 9 7 1.3628 -2.3665 0.3175 10 6 0.1442 -2.3652 1.1398 11 6 0.2243 -3.4823 2.1424 12 6 1.1230 -4.4135 2.1086 13 6 1.0698 -5.4771 3.1748 14 7 0.3296 -6.6368 2.6714 15 6 0.1545 -7.7176 3.4574 16 8 0.6108 -7.7299 4.5856 17 6 -0.5863 -8.8772 2.9541 18 16 -1.3205 -9.0303 1.3596 19 6 -1.8745 -10.5988 1.7524 20 7 -1.5266 -10.9163 2.9573 21 6 -0.8391 -10.0340 3.6400 22 17 -0.2974 -10.3082 5.2663 23 6 2.2100 -4.5114 1.0801 24 6 1.8589 -3.6722 -0.1514 25 1 -0.4850 0.8401 -0.0004 26 1 -0.7267 -2.5110 0.5007 27 1 0.0583 -1.4124 1.6622 28 1 -0.5059 -3.5069 2.9378 29 1 2.0837 -5.7793 3.4375 30 1 0.5684 -5.0815 4.0581 31 1 -0.0338 -6.6271 1.7722 32 1 -2.4415 -11.2347 1.0886 33 1 2.3355 -5.5525 0.7830 34 1 3.1429 -4.1472 1.5106 35 1 1.0845 -4.1744 -0.7314 36 1 2.7475 -3.5299 -0.7663 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001450737.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:57 Heat of formation + Delta-G solvation = 50.754079 kcal Electronic energy + Delta-G solvation = -22274.633951 eV Core-core repulsion = 18719.947015 eV Total energy + Delta-G solvation = -3554.686937 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.055 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -40.47495 -39.38503 -37.79234 -36.81952 -35.05894 -33.03819 -31.35180 -30.62816 -29.76879 -27.36996 -26.24938 -24.30878 -22.85063 -22.05832 -21.11612 -20.46779 -19.42849 -17.77199 -17.41200 -16.32538 -15.90024 -15.73040 -15.31690 -15.12215 -14.95133 -14.69196 -14.17723 -13.87956 -13.66669 -13.47770 -13.01614 -12.56592 -12.33145 -12.12097 -12.03743 -11.63112 -11.43644 -11.30211 -10.95416 -10.77313 -10.55566 -10.46361 -10.37886 -10.10308 -10.09200 -9.88620 -9.67177 -9.33109 -9.09744 -8.73917 -8.14528 -6.80862 -5.85132 -3.24128 -0.32443 0.49136 0.88768 1.79243 1.89170 2.43185 2.88336 3.28812 3.35934 3.41787 3.43110 3.94592 4.41288 4.45079 4.63287 5.03038 5.07519 5.27208 5.33870 5.51320 5.73265 5.84978 5.99021 6.08838 6.25243 6.26944 6.43807 6.66079 6.79688 6.84320 7.08492 7.17752 7.22877 7.34968 7.66219 7.75765 7.96181 8.32510 9.13946 9.76557 10.34146 11.25369 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.027801 B = 0.002521 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.914742 B =11103.160741 C =11600.137705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.000 4.000 3 Si 0.905 3.095 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.248 4.248 8 H 0.069 0.931 9 N -0.595 5.595 10 C 0.193 3.807 11 C -0.121 4.121 12 C -0.169 4.169 13 C 0.159 3.841 14 N -0.712 5.712 15 C 0.588 3.412 16 O -0.511 6.511 17 C -0.281 4.281 18 S 0.221 5.779 19 C 0.039 3.961 20 N -0.470 5.470 21 C 0.177 3.823 22 Cl 0.030 6.970 23 C -0.091 4.091 24 C 0.144 3.856 25 H 0.255 0.745 26 H 0.042 0.958 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.399 0.601 32 H 0.215 0.785 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.023 0.977 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.345 -20.343 2.540 20.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.198 4.198 3 Si 0.735 3.265 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.377 4.377 8 H 0.086 0.914 9 N -0.318 5.318 10 C 0.068 3.932 11 C -0.141 4.141 12 C -0.170 4.170 13 C 0.037 3.963 14 N -0.363 5.363 15 C 0.371 3.629 16 O -0.388 6.388 17 C -0.407 4.407 18 S 0.475 5.525 19 C -0.256 4.256 20 N -0.185 5.185 21 C 0.011 3.989 22 Cl 0.058 6.942 23 C -0.130 4.130 24 C 0.018 3.982 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.112 0.888 28 H 0.113 0.887 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.233 0.767 32 H 0.232 0.768 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.041 0.959 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.318 -20.093 2.768 20.738 hybrid contribution 0.398 0.519 0.584 0.877 sum -3.919 -19.574 3.352 20.242 Atomic orbital electron populations 1.69990 1.05183 1.25708 1.54617 1.24985 0.95402 0.98321 1.01099 0.86319 0.78842 0.83198 0.78131 1.20905 1.21600 1.21031 1.19140 0.92234 0.84349 1.42001 0.91373 1.44116 1.29198 1.01207 1.57285 1.19775 0.88851 0.94772 0.89762 1.23331 0.95603 0.96592 0.98615 1.20479 1.00162 0.97340 0.99032 1.20545 0.96255 0.83743 0.95775 1.46100 1.56691 1.16017 1.17531 1.16558 0.79803 0.81068 0.85444 1.90895 1.49075 1.80832 1.17974 1.25829 1.13641 1.01598 0.99639 1.84231 1.44274 1.13619 1.10380 1.28605 1.02639 0.99081 0.95290 1.65676 1.13820 1.32612 1.06347 1.21139 0.97234 0.88928 0.91580 1.98450 1.86638 1.96176 1.12923 1.20768 0.96707 0.99028 0.96494 1.20951 0.97395 0.87162 0.92741 0.93504 0.94014 0.88785 0.88684 0.91062 0.91147 0.76677 0.76850 0.92874 0.91649 0.95925 0.92379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.49 11.08 55.49 0.61 -24.87 16 2 C 0.00 0.00 5.01 -17.43 -0.09 -0.09 16 3 Si 0.91 21.26 29.58 -169.99 -5.03 16.23 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.25 -6.60 9.71 -15.06 -0.15 -6.74 16 8 H 0.07 1.78 7.88 -52.48 -0.41 1.36 16 9 N -0.59 -14.27 3.01 -173.67 -0.52 -14.79 16 10 C 0.19 4.37 5.23 -5.10 -0.03 4.34 16 11 C -0.12 -2.17 9.47 -35.78 -0.34 -2.50 16 12 C -0.17 -2.73 5.23 -101.00 -0.53 -3.26 16 13 C 0.16 2.24 5.66 -5.20 -0.03 2.21 16 14 N -0.71 -8.94 5.54 -62.85 -0.35 -9.29 16 15 C 0.59 7.99 7.78 -12.93 -0.10 7.89 16 16 O -0.51 -8.42 15.17 5.18 0.08 -8.34 16 17 C -0.28 -3.21 6.52 -36.75 -0.24 -3.45 16 18 S 0.22 1.59 22.35 -107.50 -2.40 -0.81 16 19 C 0.04 0.26 12.20 51.72 0.63 0.89 16 20 N -0.47 -4.92 10.50 -12.22 -0.13 -5.05 16 21 C 0.18 2.13 7.41 -18.39 -0.14 2.00 16 22 Cl 0.03 0.38 27.38 -51.86 -1.42 -1.04 16 23 C -0.09 -1.49 5.94 -28.18 -0.17 -1.65 16 24 C 0.14 2.81 6.58 -3.53 -0.02 2.79 16 25 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 26 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.09 2.39 6.41 -51.93 -0.33 2.06 16 28 H 0.10 1.53 7.73 -52.48 -0.41 1.12 16 29 H 0.07 1.02 8.11 -51.93 -0.42 0.60 16 30 H 0.07 1.02 7.78 -51.93 -0.40 0.62 16 31 H 0.40 4.37 7.65 -40.82 -0.31 4.06 16 32 H 0.22 0.51 8.06 -52.48 -0.42 0.09 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 1.11 7.96 -51.93 -0.41 0.70 16 LS Contribution 335.13 15.07 5.05 5.05 Total: -1.00 -31.30 335.13 -9.25 -40.55 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -3.95 Total: -0.05 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -1.19 Total: 2.42 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: -0.38 Total: -54.00 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: 0.08 Total: -8.34 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -2.40 Total: -0.81 kcal Atomic # 17 Polarization: 0.38 SS G_CDS: -1.42 Total: -1.04 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.30 -9.25 -40.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001450737.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.304 kcal (2) G-P(sol) polarization free energy of solvation -31.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds