Wall clock time and date at job start Tue Mar 31 2020 15:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 119.99593 * 2 1 4 4 H 1.48508 * 109.46888 * 85.27822 * 3 2 1 5 5 H 1.48504 * 109.46849 * 205.27412 * 3 2 1 6 6 H 1.48495 * 109.47212 * 325.27620 * 3 2 1 7 7 C 1.38806 * 120.00189 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99709 * 196.58455 * 7 2 1 9 9 N 1.36940 * 120.00041 * 16.57960 * 7 2 1 10 10 C 1.47157 * 120.70729 * 25.56797 * 9 7 2 11 11 C 1.54315 * 107.45103 * 131.78183 * 10 9 7 12 12 H 1.09007 * 112.18554 * 182.86832 * 11 10 9 13 13 C 1.54545 * 108.97826 * 307.71817 * 11 10 9 14 14 C 1.54284 * 104.84666 * 88.73987 * 13 11 10 15 15 C 1.54546 * 104.84742 * 359.97438 * 14 13 11 16 16 H 1.09007 * 112.17606 * 147.02452 * 15 14 13 17 17 C 1.47161 * 120.71114 * 205.84377 * 9 7 2 18 18 N 1.48306 * 104.90959 * 24.96438 * 15 14 13 19 19 C 1.34776 * 128.07886 * 138.83093 * 18 15 14 20 20 O 1.21639 * 119.99862 * 359.97438 * 19 18 15 21 21 C 1.47144 * 120.00255 * 180.02562 * 19 18 15 22 22 N 1.30568 * 125.52654 * 359.68519 * 21 19 18 23 23 C 1.30660 * 115.93176 * 179.78478 * 22 21 19 24 24 C 1.34441 * 115.74148 * 0.51601 * 23 22 21 25 25 Cl 1.73594 * 125.46632 * 179.74341 * 24 23 22 26 26 S 1.71079 * 109.06804 * 359.72767 * 24 23 22 27 27 H 0.97007 * 120.00683 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.75204 * 252.41361 * 10 9 7 29 29 H 1.09005 * 109.74994 * 13.14587 * 10 9 7 30 30 H 1.08994 * 110.36183 * 329.89442 * 13 11 10 31 31 H 1.09000 * 110.45979 * 207.62288 * 13 11 10 32 32 H 1.09008 * 110.35968 * 241.16100 * 14 13 11 33 33 H 1.08989 * 110.36623 * 118.84779 * 14 13 11 34 34 H 1.09007 * 109.75103 * 346.86231 * 17 9 7 35 35 H 1.08999 * 109.74844 * 107.54008 * 17 9 7 36 36 H 1.08004 * 122.13402 * 180.25952 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3977 2.1041 1.3954 5 1 3.5940 1.4135 -0.5978 6 1 1.5010 2.6218 -0.7975 7 6 2.0102 -1.2021 -0.0005 8 1 3.0565 -1.2216 0.2664 9 7 1.3683 -2.3632 -0.3395 10 6 0.1830 -2.3397 -1.2113 11 6 0.3912 -3.4091 -2.3042 12 1 -0.4248 -3.4234 -3.0269 13 6 1.7630 -3.1790 -2.9777 14 6 2.7616 -3.9930 -2.1288 15 6 1.9025 -4.6403 -1.0192 16 1 2.2813 -5.6188 -0.7237 17 6 1.8453 -3.6606 0.1653 18 7 0.5362 -4.7175 -1.5906 19 6 -0.3495 -5.7288 -1.4936 20 8 -0.0584 -6.7349 -0.8751 21 6 -1.6681 -5.6162 -2.1367 22 7 -2.0938 -4.5882 -2.8200 23 6 -3.2988 -4.6902 -3.3147 24 6 -3.9455 -5.8376 -3.0450 25 17 -5.5520 -6.2354 -3.5687 26 16 -2.9310 -6.8429 -2.1032 27 1 -0.4851 0.8400 0.0004 28 1 -0.7103 -2.5533 -0.6245 29 1 0.0906 -1.3603 -1.6809 30 1 2.0226 -2.1206 -2.9577 31 1 1.7501 -3.5463 -4.0039 32 1 3.5123 -3.3346 -1.6913 33 1 3.2382 -4.7616 -2.7371 34 1 2.8399 -3.5451 0.5962 35 1 1.1574 -4.0367 0.9226 36 1 -3.7484 -3.9013 -3.8995 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001017733557.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:15 Heat of formation + Delta-G solvation = 57.911548 kcal Electronic energy + Delta-G solvation = -23876.964328 eV Core-core repulsion = 20322.587763 eV Total energy + Delta-G solvation = -3554.376565 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.055 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -40.44542 -39.46861 -37.77807 -37.10903 -34.10226 -31.81321 -30.88700 -30.44133 -29.88519 -26.72962 -25.90634 -23.68468 -23.25414 -21.92702 -20.49389 -20.22295 -18.80423 -18.07152 -17.33682 -16.11770 -15.83295 -15.38148 -15.09352 -15.05198 -14.48430 -14.17915 -14.05803 -13.39435 -13.09888 -12.95907 -12.81806 -12.47277 -12.29288 -12.00741 -11.94530 -11.60209 -11.17664 -11.14610 -10.85925 -10.63954 -10.50127 -10.34231 -10.21459 -10.08846 -9.83289 -9.69834 -9.63878 -9.49273 -9.06502 -8.56512 -8.28918 -6.73460 -5.83203 -3.24547 -0.02931 0.53422 1.32581 1.81127 2.21225 3.21198 3.31008 3.34701 3.42324 3.43434 4.04686 4.44712 4.72426 4.90422 5.13207 5.30554 5.35121 5.40740 5.59358 5.66148 5.78951 5.90265 6.05850 6.24132 6.38090 6.40250 6.45583 6.58895 6.67577 6.81301 6.97211 7.20779 7.27707 7.53003 7.72008 7.90714 8.27529 8.34174 9.13614 9.76305 10.33206 11.25035 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.017552 B = 0.003919 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.898501 B = 7142.660066 C = 8110.522729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.003 3.997 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.278 1.278 6 H -0.290 1.290 7 C -0.251 4.251 8 H 0.069 0.931 9 N -0.589 5.589 10 C 0.177 3.823 11 C 0.092 3.908 12 H 0.115 0.885 13 C -0.113 4.113 14 C -0.111 4.111 15 C 0.115 3.885 16 H 0.092 0.908 17 C 0.138 3.862 18 N -0.577 5.577 19 C 0.606 3.394 20 O -0.548 6.548 21 C 0.013 3.987 22 N -0.407 5.407 23 C 0.051 3.949 24 C -0.225 4.225 25 Cl 0.007 6.993 26 S 0.279 5.721 27 H 0.254 0.746 28 H 0.026 0.974 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.051 0.949 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.021 0.979 36 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.747 -11.457 -8.812 15.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.195 4.195 3 Si 0.731 3.269 4 H -0.216 1.216 5 H -0.204 1.204 6 H -0.216 1.216 7 C -0.381 4.381 8 H 0.086 0.914 9 N -0.312 5.312 10 C 0.051 3.949 11 C -0.011 4.011 12 H 0.133 0.867 13 C -0.151 4.151 14 C -0.150 4.150 15 C 0.011 3.989 16 H 0.110 0.890 17 C 0.010 3.990 18 N -0.308 5.308 19 C 0.390 3.610 20 O -0.427 6.427 21 C -0.262 4.262 22 N -0.124 5.124 23 C -0.108 4.108 24 C -0.375 4.375 25 Cl 0.035 6.965 26 S 0.533 5.467 27 H 0.064 0.936 28 H 0.044 0.956 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.070 0.930 32 H 0.103 0.897 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.039 0.961 36 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -5.630 -12.494 -8.096 15.917 hybrid contribution -0.475 1.731 -0.531 1.872 sum -6.105 -10.763 -8.627 15.084 Atomic orbital electron populations 1.70025 1.05231 1.25556 1.53998 1.25003 0.95262 0.98325 1.00925 0.86299 0.79187 0.83789 0.77616 1.21557 1.20369 1.21584 1.19175 0.92512 0.84414 1.41971 0.91355 1.44171 1.32270 1.00987 1.53785 1.21328 0.88582 0.96125 0.88862 1.24190 0.98435 0.81970 0.96471 0.86715 1.22297 0.94184 1.01827 0.96787 1.22323 0.97863 0.98531 0.96236 1.23028 0.80548 0.99520 0.95824 0.89009 1.21445 0.98536 0.86787 0.92209 1.49350 1.14949 1.16484 1.50030 1.16092 0.81298 0.82782 0.80820 1.90830 1.77590 1.29955 1.44370 1.27831 1.00547 0.93722 1.04085 1.67090 1.12422 1.24329 1.08597 1.21932 0.89917 0.97164 1.01772 1.26660 0.96399 1.02746 1.11703 1.98377 1.16252 1.93206 1.88670 1.84123 1.03536 1.16544 1.42466 0.93562 0.95562 0.88932 0.89374 0.92985 0.89691 0.92773 0.91598 0.96128 0.79756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.28 11.12 55.49 0.62 -24.66 16 2 C 0.00 0.09 4.95 -17.43 -0.09 0.01 16 3 Si 0.90 20.81 29.59 -169.99 -5.03 15.78 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 7 C -0.25 -6.46 9.64 -15.06 -0.15 -6.60 16 8 H 0.07 1.71 7.87 -52.49 -0.41 1.30 16 9 N -0.59 -13.87 2.28 -170.86 -0.39 -14.26 16 10 C 0.18 4.05 4.71 -2.99 -0.01 4.03 16 11 C 0.09 1.71 3.79 -64.62 -0.25 1.47 16 12 H 0.12 2.03 5.59 -51.92 -0.29 1.74 16 13 C -0.11 -1.89 6.20 -25.25 -0.16 -2.04 16 14 C -0.11 -1.78 6.20 -25.25 -0.16 -1.94 16 15 C 0.12 2.05 4.07 -65.70 -0.27 1.78 16 16 H 0.09 1.54 7.93 -51.93 -0.41 1.13 16 17 C 0.14 2.83 6.00 -3.25 -0.02 2.81 16 18 N -0.58 -10.71 2.77 -153.06 -0.42 -11.14 16 19 C 0.61 11.20 7.92 -12.65 -0.10 11.10 16 20 O -0.55 -10.97 17.25 5.24 0.09 -10.88 16 21 C 0.01 0.21 7.37 -14.48 -0.11 0.10 16 22 N -0.41 -6.24 7.67 -11.50 -0.09 -6.33 16 23 C 0.05 0.64 11.21 -19.39 -0.22 0.42 16 24 C -0.23 -2.60 6.95 29.39 0.20 -2.39 16 25 Cl 0.01 0.06 29.30 -51.86 -1.52 -1.45 16 26 S 0.28 3.47 23.03 -107.50 -2.48 1.00 16 27 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.09 2.33 6.27 -51.93 -0.33 2.00 16 30 H 0.09 1.61 7.89 -51.93 -0.41 1.20 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 1.41 7.84 -51.92 -0.41 1.00 16 33 H 0.05 0.76 8.14 -51.94 -0.42 0.34 16 34 H 0.07 1.27 7.96 -51.93 -0.41 0.86 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.19 1.85 8.06 -52.48 -0.42 1.42 16 LS Contribution 323.60 15.07 4.88 4.88 Total: -1.00 -29.12 323.60 -9.57 -38.69 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -3.92 Total: -0.37 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: -1.31 Total: 8.75 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: -0.28 Total: -56.39 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.09 Total: -10.88 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.78 kcal Atomic # 16 Polarization: 3.47 SS G_CDS: -2.48 Total: 1.00 kcal Atomic # 17 Polarization: 0.06 SS G_CDS: -1.52 Total: -1.45 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.12 -9.57 -38.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017733557.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.601 kcal (2) G-P(sol) polarization free energy of solvation -29.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds