Wall clock time and date at job start Tue Mar 31 2020 15:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 119.99593 * 2 1 4 4 H 1.48508 * 109.46888 * 85.27822 * 3 2 1 5 5 H 1.48504 * 109.46849 * 205.27412 * 3 2 1 6 6 H 1.48495 * 109.47212 * 325.27620 * 3 2 1 7 7 C 1.38806 * 120.00189 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99709 * 196.58455 * 7 2 1 9 9 N 1.36940 * 120.00041 * 16.57960 * 7 2 1 10 10 C 1.47157 * 120.70729 * 25.56797 * 9 7 2 11 11 C 1.54315 * 107.45103 * 131.78183 * 10 9 7 12 12 H 1.09007 * 112.18554 * 182.86832 * 11 10 9 13 13 C 1.54545 * 108.97826 * 307.71817 * 11 10 9 14 14 C 1.54284 * 104.84666 * 88.73987 * 13 11 10 15 15 C 1.54546 * 104.84742 * 359.97438 * 14 13 11 16 16 H 1.09007 * 112.17606 * 147.02452 * 15 14 13 17 17 C 1.47161 * 120.71114 * 205.84377 * 9 7 2 18 18 N 1.48306 * 104.90959 * 24.96438 * 15 14 13 19 19 C 1.34776 * 128.07886 * 138.83093 * 18 15 14 20 20 O 1.21639 * 119.99862 * 359.97438 * 19 18 15 21 21 C 1.47144 * 120.00255 * 180.02562 * 19 18 15 22 22 N 1.30568 * 125.52654 * 359.68519 * 21 19 18 23 23 C 1.30660 * 115.93176 * 179.78478 * 22 21 19 24 24 C 1.34441 * 115.74148 * 0.51601 * 23 22 21 25 25 Cl 1.73594 * 125.46632 * 179.74341 * 24 23 22 26 26 S 1.71079 * 109.06804 * 359.72767 * 24 23 22 27 27 H 0.97007 * 120.00683 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.75204 * 252.41361 * 10 9 7 29 29 H 1.09005 * 109.74994 * 13.14587 * 10 9 7 30 30 H 1.08994 * 110.36183 * 329.89442 * 13 11 10 31 31 H 1.09000 * 110.45979 * 207.62288 * 13 11 10 32 32 H 1.09008 * 110.35968 * 241.16100 * 14 13 11 33 33 H 1.08989 * 110.36623 * 118.84779 * 14 13 11 34 34 H 1.09007 * 109.75103 * 346.86231 * 17 9 7 35 35 H 1.08999 * 109.74844 * 107.54008 * 17 9 7 36 36 H 1.08004 * 122.13402 * 180.25952 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3977 2.1041 1.3954 5 1 3.5940 1.4135 -0.5978 6 1 1.5010 2.6218 -0.7975 7 6 2.0102 -1.2021 -0.0005 8 1 3.0565 -1.2216 0.2664 9 7 1.3683 -2.3632 -0.3395 10 6 0.1830 -2.3397 -1.2113 11 6 0.3912 -3.4091 -2.3042 12 1 -0.4248 -3.4234 -3.0269 13 6 1.7630 -3.1790 -2.9777 14 6 2.7616 -3.9930 -2.1288 15 6 1.9025 -4.6403 -1.0192 16 1 2.2813 -5.6188 -0.7237 17 6 1.8453 -3.6606 0.1653 18 7 0.5362 -4.7175 -1.5906 19 6 -0.3495 -5.7288 -1.4936 20 8 -0.0584 -6.7349 -0.8751 21 6 -1.6681 -5.6162 -2.1367 22 7 -2.0938 -4.5882 -2.8200 23 6 -3.2988 -4.6902 -3.3147 24 6 -3.9455 -5.8376 -3.0450 25 17 -5.5520 -6.2354 -3.5687 26 16 -2.9310 -6.8429 -2.1032 27 1 -0.4851 0.8400 0.0004 28 1 -0.7103 -2.5533 -0.6245 29 1 0.0906 -1.3603 -1.6809 30 1 2.0226 -2.1206 -2.9577 31 1 1.7501 -3.5463 -4.0039 32 1 3.5123 -3.3346 -1.6913 33 1 3.2382 -4.7616 -2.7371 34 1 2.8399 -3.5451 0.5962 35 1 1.1574 -4.0367 0.9226 36 1 -3.7484 -3.9013 -3.8995 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001017733557.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:14 Heat of formation + Delta-G solvation = 41.363662 kcal Electronic energy + Delta-G solvation = -23877.681898 eV Core-core repulsion = 20322.587763 eV Total energy + Delta-G solvation = -3555.094136 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.055 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.79217 -40.69183 -39.25317 -38.01899 -35.91838 -33.34650 -32.48782 -32.08868 -31.07237 -28.24927 -27.37468 -25.27692 -24.83134 -23.36053 -21.85132 -21.60627 -20.10003 -19.46958 -18.80287 -17.67756 -17.26806 -16.74155 -16.55638 -16.34568 -16.09277 -15.47608 -15.26167 -15.06197 -14.86419 -14.41142 -14.29541 -13.65824 -13.57396 -13.39789 -13.26540 -13.16166 -12.86653 -12.66636 -12.26212 -12.12237 -12.07852 -12.05751 -11.78799 -11.62695 -11.51266 -11.15309 -10.78557 -10.63424 -10.55413 -10.15141 -9.81197 -8.66936 -7.83509 -5.28402 -1.12726 -0.49628 0.29180 0.84534 1.08306 1.50189 1.52564 1.61741 1.87270 2.00862 2.53986 2.84265 3.32907 3.50923 3.60005 3.85789 3.91107 3.97400 4.14253 4.24176 4.42056 4.56362 4.63160 4.77496 4.88087 5.00965 5.04872 5.12812 5.16315 5.26700 5.38703 5.58074 5.63896 5.69148 6.19508 6.35630 6.45360 6.86863 7.14440 7.82814 8.37023 9.22860 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.017552 B = 0.003919 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.898501 B = 7142.660066 C = 8110.522729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.048 4.048 3 Si 0.965 3.035 4 H -0.293 1.293 5 H -0.264 1.264 6 H -0.295 1.295 7 C -0.254 4.254 8 H 0.076 0.924 9 N -0.600 5.600 10 C 0.192 3.808 11 C 0.107 3.893 12 H 0.125 0.875 13 C -0.108 4.108 14 C -0.102 4.102 15 C 0.118 3.882 16 H 0.106 0.894 17 C 0.136 3.864 18 N -0.585 5.585 19 C 0.605 3.395 20 O -0.570 6.570 21 C -0.033 4.033 22 N -0.422 5.422 23 C 0.041 3.959 24 C -0.212 4.212 25 Cl 0.032 6.968 26 S 0.328 5.672 27 H 0.248 0.752 28 H -0.017 1.017 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.078 0.922 35 H -0.006 1.006 36 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.577 -12.560 -10.433 17.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.243 4.243 3 Si 0.794 3.206 4 H -0.220 1.220 5 H -0.188 1.188 6 H -0.222 1.222 7 C -0.383 4.383 8 H 0.093 0.907 9 N -0.324 5.324 10 C 0.065 3.935 11 C 0.003 3.997 12 H 0.142 0.858 13 C -0.146 4.146 14 C -0.140 4.140 15 C 0.014 3.986 16 H 0.124 0.876 17 C 0.010 3.990 18 N -0.316 5.316 19 C 0.390 3.610 20 O -0.451 6.451 21 C -0.306 4.306 22 N -0.140 5.140 23 C -0.118 4.118 24 C -0.362 4.362 25 Cl 0.061 6.939 26 S 0.583 5.417 27 H 0.058 0.942 28 H 0.001 0.999 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.012 0.988 36 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -5.431 -13.624 -9.721 17.596 hybrid contribution -0.719 1.955 0.015 2.083 sum -6.150 -11.669 -9.706 16.377 Atomic orbital electron populations 1.70200 1.06746 1.25723 1.55924 1.25722 0.95883 1.01308 1.01436 0.85292 0.78472 0.79830 0.77018 1.22040 1.18829 1.22163 1.19534 0.92905 0.85226 1.40669 0.90670 1.44372 1.32157 1.01592 1.54237 1.20996 0.86876 0.96298 0.89293 1.23916 1.00179 0.80612 0.94959 0.85779 1.22266 0.92877 1.01101 0.98364 1.22287 0.97149 0.98937 0.95606 1.22971 0.81034 0.99346 0.95271 0.87615 1.21544 0.98222 0.86178 0.93096 1.49395 1.15357 1.16480 1.50340 1.16435 0.82002 0.82304 0.80224 1.90797 1.78319 1.30675 1.45281 1.27406 1.00845 0.95832 1.06492 1.67009 1.13824 1.24599 1.08527 1.22236 0.89252 0.98199 1.02151 1.26827 0.97161 1.02133 1.10093 1.98399 1.14352 1.92961 1.88238 1.83928 1.01797 1.14726 1.41288 0.94238 0.99864 0.91650 0.91113 0.90026 0.90153 0.89681 0.90334 0.98813 0.77526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.52 11.12 21.65 0.24 -54.28 16 2 C -0.05 -2.60 4.95 84.86 0.42 -2.19 16 3 Si 0.97 43.36 29.59 68.60 2.03 45.39 16 4 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 5 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 6 H -0.30 -13.40 7.11 99.48 0.71 -12.70 16 7 C -0.25 -13.18 9.64 84.03 0.81 -12.37 16 8 H 0.08 3.74 7.87 -2.91 -0.02 3.72 16 9 N -0.60 -28.96 2.28 -694.48 -1.58 -30.54 16 10 C 0.19 9.12 4.71 86.70 0.41 9.53 16 11 C 0.11 3.95 3.79 45.33 0.17 4.13 16 12 H 0.12 4.39 5.59 -2.38 -0.01 4.38 16 13 C -0.11 -3.45 6.20 31.56 0.20 -3.26 16 14 C -0.10 -3.04 6.20 31.56 0.20 -2.85 16 15 C 0.12 4.10 4.07 45.45 0.19 4.29 16 16 H 0.11 3.41 7.93 -2.38 -0.02 3.39 16 17 C 0.14 5.67 6.00 86.53 0.52 6.19 16 18 N -0.58 -21.62 2.77 -756.41 -2.10 -23.71 16 19 C 0.60 22.31 7.92 86.58 0.69 22.99 16 20 O -0.57 -22.71 17.25 -4.15 -0.07 -22.78 16 21 C -0.03 -1.04 7.37 87.22 0.64 -0.39 16 22 N -0.42 -12.69 7.67 -190.29 -1.46 -14.15 16 23 C 0.04 0.96 11.21 84.00 0.94 1.90 16 24 C -0.21 -4.44 6.95 66.95 0.47 -3.98 16 25 Cl 0.03 0.53 29.30 -2.72 -0.08 0.45 16 26 S 0.33 7.67 23.03 -56.49 -1.30 6.37 16 27 H 0.25 14.07 8.31 -92.70 -0.77 13.29 16 28 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 29 H 0.07 3.45 6.27 -2.38 -0.01 3.43 16 30 H 0.07 2.54 7.89 -2.39 -0.02 2.52 16 31 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.08 2.51 7.84 -2.38 -0.02 2.49 16 33 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.08 3.01 7.96 -2.38 -0.02 3.00 16 35 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 36 H 0.21 3.73 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -64.51 323.60 2.44 -62.07 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: 1.12 Total: 7.19 kcal Atomic # 6 Polarization: 18.35 SS G_CDS: 5.64 Total: 23.99 kcal Atomic # 7 Polarization: -117.78 SS G_CDS: -4.90 Total: -122.68 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.07 Total: -22.78 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: 7.67 SS G_CDS: -1.30 Total: 6.37 kcal Atomic # 17 Polarization: 0.53 SS G_CDS: -0.08 Total: 0.45 kcal Total: -64.51 2.44 -62.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017733557.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.429 kcal (2) G-P(sol) polarization free energy of solvation -64.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds