Wall clock time and date at job start Tue Mar 31 2020 15:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99948 * 2 1 4 4 H 1.48502 * 109.47080 * 85.26605 * 3 2 1 5 5 H 1.48505 * 109.47345 * 205.26267 * 3 2 1 6 6 H 1.48504 * 109.47181 * 325.26435 * 3 2 1 7 7 C 1.38808 * 120.00322 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00194 * 195.77161 * 7 2 1 9 9 N 1.36939 * 119.99637 * 15.76494 * 7 2 1 10 10 C 1.47162 * 120.71121 * 26.00425 * 9 7 2 11 11 C 1.54317 * 107.45136 * 131.78292 * 10 9 7 12 12 H 1.08995 * 112.18386 * 182.87123 * 11 10 9 13 13 C 1.54544 * 108.97688 * 307.71922 * 11 10 9 14 14 C 1.54285 * 104.84760 * 88.73832 * 13 11 10 15 15 C 1.54549 * 104.84972 * 359.97438 * 14 13 11 16 16 H 1.08996 * 112.17934 * 147.01586 * 15 14 13 17 17 C 1.47166 * 120.70718 * 206.28407 * 9 7 2 18 18 N 1.48316 * 104.90604 * 24.96030 * 15 14 13 19 19 C 1.34772 * 128.07674 * 138.83376 * 18 15 14 20 20 O 1.21627 * 119.99832 * 354.20951 * 19 18 15 21 21 C 1.47227 * 120.00004 * 174.21693 * 19 18 15 22 22 N 1.30606 * 125.53192 * 173.41412 * 21 19 18 23 23 C 1.30734 * 115.89664 * 180.02562 * 22 21 19 24 24 Cl 1.73609 * 122.11941 * 179.97438 * 23 22 21 25 25 C 1.34327 * 115.75997 * 359.97438 * 23 22 21 26 26 S 1.71071 * 109.09074 * 359.73095 * 25 23 22 27 27 H 0.97003 * 119.99893 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.75071 * 252.41292 * 10 9 7 29 29 H 1.09003 * 109.74715 * 13.14515 * 10 9 7 30 30 H 1.08993 * 110.36762 * 329.89618 * 13 11 10 31 31 H 1.09003 * 110.45701 * 207.62121 * 13 11 10 32 32 H 1.08996 * 110.36189 * 241.15914 * 14 13 11 33 33 H 1.09002 * 110.36418 * 118.83984 * 14 13 11 34 34 H 1.09001 * 109.75364 * 346.85350 * 17 9 7 35 35 H 1.09002 * 109.74850 * 107.53904 * 17 9 7 36 36 H 1.08002 * 125.45827 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3977 2.1042 1.3953 5 1 3.5943 1.4134 -0.5975 6 1 1.5013 2.6218 -0.7978 7 6 2.0103 -1.2021 -0.0005 8 1 3.0598 -1.2198 0.2537 9 7 1.3643 -2.3655 -0.3233 10 6 0.1739 -2.3492 -1.1884 11 6 0.3737 -3.4306 -2.2710 12 1 -0.4464 -3.4511 -2.9886 13 6 1.7420 -3.2103 -2.9549 14 6 2.7441 -4.0170 -2.1032 15 6 1.8904 -4.6508 -0.9816 16 1 2.2691 -5.6268 -0.6780 17 6 1.8419 -3.6584 0.1927 18 7 0.5205 -4.7315 -1.5442 19 6 -0.3664 -5.7400 -1.4311 20 8 -0.0383 -6.7811 -0.8947 21 6 -1.7323 -5.5815 -1.9571 22 7 -2.6369 -6.5217 -2.0159 23 6 -3.7913 -6.1727 -2.5205 24 17 -5.1079 -7.2937 -2.6754 25 6 -3.8942 -4.8917 -2.9116 26 16 -2.4142 -4.0916 -2.6018 27 1 -0.4850 0.8401 0.0004 28 1 -0.7163 -2.5548 -0.5940 29 1 0.0805 -1.3747 -1.6679 30 1 2.0037 -2.1523 -2.9478 31 1 1.7224 -3.5886 -3.9770 32 1 3.4985 -3.3555 -1.6772 33 1 3.2157 -4.7931 -2.7060 34 1 2.8392 -3.5402 0.6163 35 1 1.1578 -4.0250 0.9579 36 1 -4.7723 -4.4382 -3.3471 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001017849127.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:10 Heat of formation + Delta-G solvation = 55.887953 kcal Electronic energy + Delta-G solvation = -23952.958373 eV Core-core repulsion = 20398.494058 eV Total energy + Delta-G solvation = -3554.464315 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.055 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -40.42190 -39.73956 -37.72430 -36.59399 -34.24807 -31.96357 -31.03284 -30.70641 -30.17525 -26.97154 -25.98124 -23.88116 -23.35357 -22.06847 -20.63437 -19.55024 -19.32649 -18.21271 -17.24598 -16.26351 -16.11139 -15.44541 -15.30719 -15.22343 -14.60541 -14.29052 -13.76227 -13.46759 -13.24111 -13.15522 -13.02889 -12.47589 -12.12315 -11.95206 -11.82752 -11.68402 -11.34282 -11.08982 -10.94428 -10.68419 -10.64046 -10.46939 -10.36102 -10.15880 -9.97246 -9.87802 -9.78972 -9.65424 -8.85521 -8.69106 -8.46706 -6.87402 -5.95819 -3.37834 0.09109 0.97081 1.15828 2.06550 2.13501 2.89452 3.24721 3.28157 3.36288 3.36657 4.21859 4.34407 4.76214 4.85957 4.89199 5.09614 5.20483 5.23703 5.38578 5.43214 5.56229 5.63038 5.84830 5.92740 6.10401 6.16546 6.27251 6.39644 6.56836 6.69190 6.77389 6.97579 7.20986 7.26739 7.61653 7.73126 8.20882 8.21985 9.00592 9.62732 10.19084 11.13142 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.019094 B = 0.004083 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.081792 B = 6855.658856 C = 7729.583678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.005 3.995 3 Si 0.903 3.097 4 H -0.288 1.288 5 H -0.278 1.278 6 H -0.289 1.289 7 C -0.253 4.253 8 H 0.071 0.929 9 N -0.586 5.586 10 C 0.171 3.829 11 C 0.090 3.910 12 H 0.079 0.921 13 C -0.107 4.107 14 C -0.111 4.111 15 C 0.120 3.880 16 H 0.096 0.904 17 C 0.135 3.865 18 N -0.603 5.603 19 C 0.611 3.389 20 O -0.514 6.514 21 C 0.015 3.985 22 N -0.403 5.403 23 C 0.106 3.894 24 Cl -0.015 7.015 25 C -0.286 4.286 26 S 0.272 5.728 27 H 0.256 0.744 28 H 0.032 0.968 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.024 0.976 36 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.925 -5.869 -9.016 11.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.194 4.194 3 Si 0.733 3.267 4 H -0.215 1.215 5 H -0.203 1.203 6 H -0.215 1.215 7 C -0.382 4.382 8 H 0.089 0.911 9 N -0.309 5.309 10 C 0.044 3.956 11 C -0.015 4.015 12 H 0.096 0.904 13 C -0.146 4.146 14 C -0.150 4.150 15 C 0.017 3.983 16 H 0.114 0.886 17 C 0.008 3.992 18 N -0.338 5.338 19 C 0.395 3.605 20 O -0.390 6.390 21 C -0.261 4.261 22 N -0.120 5.120 23 C -0.059 4.059 24 Cl 0.013 6.987 25 C -0.428 4.428 26 S 0.527 5.473 27 H 0.066 0.934 28 H 0.050 0.950 29 H 0.117 0.883 30 H 0.112 0.888 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.042 0.958 36 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -3.538 -5.968 -8.642 11.082 hybrid contribution -0.942 0.134 -0.081 0.955 sum -4.480 -5.834 -8.723 11.410 Atomic orbital electron populations 1.69989 1.05239 1.25772 1.53961 1.25026 0.95326 0.98414 1.00624 0.86272 0.79181 0.83550 0.77726 1.21466 1.20313 1.21525 1.19185 0.92368 0.84094 1.42536 0.91140 1.44081 1.31597 1.01435 1.53797 1.21464 0.89348 0.95727 0.89012 1.24161 0.97726 0.84116 0.95523 0.90380 1.22255 0.93003 1.02387 0.96924 1.22330 0.97815 0.98695 0.96138 1.22996 0.79856 0.99784 0.95675 0.88631 1.21507 0.98857 0.86544 0.92304 1.49387 1.15730 1.16917 1.51728 1.16013 0.81235 0.82990 0.80274 1.90828 1.77350 1.26536 1.44298 1.27287 0.99208 0.92151 1.07473 1.66033 0.99443 1.32925 1.13615 1.20362 0.90727 0.89754 1.05040 1.98385 1.41796 1.62086 1.96429 1.26978 1.07903 0.98097 1.09843 1.84818 0.99514 1.12555 1.50390 0.93401 0.94969 0.88320 0.88816 0.92500 0.89389 0.92399 0.91253 0.95826 0.79255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -23.59 11.11 55.49 0.62 -22.97 16 2 C 0.00 0.12 4.96 -17.43 -0.09 0.03 16 3 Si 0.90 19.72 29.58 -169.99 -5.03 14.69 16 4 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.25 -6.06 9.64 -15.06 -0.15 -6.21 16 8 H 0.07 1.66 7.87 -52.49 -0.41 1.25 16 9 N -0.59 -12.72 2.27 -170.85 -0.39 -13.11 16 10 C 0.17 3.47 4.62 -2.99 -0.01 3.46 16 11 C 0.09 1.45 3.24 -64.62 -0.21 1.24 16 12 H 0.08 1.12 4.74 -29.88 -0.14 0.97 16 13 C -0.11 -1.58 6.20 -25.25 -0.16 -1.73 16 14 C -0.11 -1.62 6.20 -25.24 -0.16 -1.78 16 15 C 0.12 2.00 4.09 -65.69 -0.27 1.74 16 16 H 0.10 1.54 7.90 -51.93 -0.41 1.13 16 17 C 0.13 2.58 6.00 -3.25 -0.02 2.56 16 18 N -0.60 -10.47 2.77 -153.03 -0.42 -10.90 16 19 C 0.61 11.51 7.91 -12.61 -0.10 11.41 16 20 O -0.51 -11.15 17.37 5.25 0.09 -11.06 16 21 C 0.02 0.26 7.38 -14.42 -0.11 0.15 16 22 N -0.40 -7.02 10.60 -8.61 -0.09 -7.11 16 23 C 0.11 1.53 7.22 -19.40 -0.14 1.39 16 24 Cl -0.01 -0.19 29.20 -51.86 -1.51 -1.70 16 25 C -0.29 -3.43 10.93 29.35 0.32 -3.11 16 26 S 0.27 3.58 18.97 -107.50 -2.04 1.54 16 27 H 0.26 6.51 8.31 -40.82 -0.34 6.18 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.10 2.19 6.28 -51.93 -0.33 1.86 16 30 H 0.09 1.49 7.89 -51.93 -0.41 1.09 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.09 1.32 7.84 -51.93 -0.41 0.91 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.07 1.24 7.96 -51.93 -0.41 0.83 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.19 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 321.01 15.07 4.84 4.84 Total: -1.00 -29.00 321.01 -8.79 -37.80 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: -3.77 Total: -1.17 kcal Atomic # 6 Polarization: 10.24 SS G_CDS: -1.08 Total: 9.16 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: -0.29 Total: -54.09 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.09 Total: -11.06 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.03 Total: 14.69 kcal Atomic # 16 Polarization: 3.58 SS G_CDS: -2.04 Total: 1.54 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.51 Total: -1.70 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.00 -8.79 -37.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017849127.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.684 kcal (2) G-P(sol) polarization free energy of solvation -29.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds