Wall clock time and date at job start Tue Mar 31 2020 15:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99948 * 2 1 4 4 H 1.48502 * 109.47080 * 85.26605 * 3 2 1 5 5 H 1.48505 * 109.47345 * 205.26267 * 3 2 1 6 6 H 1.48504 * 109.47181 * 325.26435 * 3 2 1 7 7 C 1.38808 * 120.00322 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00194 * 195.77161 * 7 2 1 9 9 N 1.36939 * 119.99637 * 15.76494 * 7 2 1 10 10 C 1.47162 * 120.71121 * 26.00425 * 9 7 2 11 11 C 1.54317 * 107.45136 * 131.78292 * 10 9 7 12 12 H 1.08995 * 112.18386 * 182.87123 * 11 10 9 13 13 C 1.54544 * 108.97688 * 307.71922 * 11 10 9 14 14 C 1.54285 * 104.84760 * 88.73832 * 13 11 10 15 15 C 1.54549 * 104.84972 * 359.97438 * 14 13 11 16 16 H 1.08996 * 112.17934 * 147.01586 * 15 14 13 17 17 C 1.47166 * 120.70718 * 206.28407 * 9 7 2 18 18 N 1.48316 * 104.90604 * 24.96030 * 15 14 13 19 19 C 1.34772 * 128.07674 * 138.83376 * 18 15 14 20 20 O 1.21627 * 119.99832 * 354.20951 * 19 18 15 21 21 C 1.47227 * 120.00004 * 174.21693 * 19 18 15 22 22 N 1.30606 * 125.53192 * 173.41412 * 21 19 18 23 23 C 1.30734 * 115.89664 * 180.02562 * 22 21 19 24 24 Cl 1.73609 * 122.11941 * 179.97438 * 23 22 21 25 25 C 1.34327 * 115.75997 * 359.97438 * 23 22 21 26 26 S 1.71071 * 109.09074 * 359.73095 * 25 23 22 27 27 H 0.97003 * 119.99893 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.75071 * 252.41292 * 10 9 7 29 29 H 1.09003 * 109.74715 * 13.14515 * 10 9 7 30 30 H 1.08993 * 110.36762 * 329.89618 * 13 11 10 31 31 H 1.09003 * 110.45701 * 207.62121 * 13 11 10 32 32 H 1.08996 * 110.36189 * 241.15914 * 14 13 11 33 33 H 1.09002 * 110.36418 * 118.83984 * 14 13 11 34 34 H 1.09001 * 109.75364 * 346.85350 * 17 9 7 35 35 H 1.09002 * 109.74850 * 107.53904 * 17 9 7 36 36 H 1.08002 * 125.45827 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3977 2.1042 1.3953 5 1 3.5943 1.4134 -0.5975 6 1 1.5013 2.6218 -0.7978 7 6 2.0103 -1.2021 -0.0005 8 1 3.0598 -1.2198 0.2537 9 7 1.3643 -2.3655 -0.3233 10 6 0.1739 -2.3492 -1.1884 11 6 0.3737 -3.4306 -2.2710 12 1 -0.4464 -3.4511 -2.9886 13 6 1.7420 -3.2103 -2.9549 14 6 2.7441 -4.0170 -2.1032 15 6 1.8904 -4.6508 -0.9816 16 1 2.2691 -5.6268 -0.6780 17 6 1.8419 -3.6584 0.1927 18 7 0.5205 -4.7315 -1.5442 19 6 -0.3664 -5.7400 -1.4311 20 8 -0.0383 -6.7811 -0.8947 21 6 -1.7323 -5.5815 -1.9571 22 7 -2.6369 -6.5217 -2.0159 23 6 -3.7913 -6.1727 -2.5205 24 17 -5.1079 -7.2937 -2.6754 25 6 -3.8942 -4.8917 -2.9116 26 16 -2.4142 -4.0916 -2.6018 27 1 -0.4850 0.8401 0.0004 28 1 -0.7163 -2.5548 -0.5940 29 1 0.0805 -1.3747 -1.6679 30 1 2.0037 -2.1523 -2.9478 31 1 1.7224 -3.5886 -3.9770 32 1 3.4985 -3.3555 -1.6772 33 1 3.2157 -4.7931 -2.7060 34 1 2.8392 -3.5402 0.6163 35 1 1.1578 -4.0250 0.9579 36 1 -4.7723 -4.4382 -3.3471 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001017849127.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:05 Heat of formation + Delta-G solvation = 38.260806 kcal Electronic energy + Delta-G solvation = -23953.722744 eV Core-core repulsion = 20398.494058 eV Total energy + Delta-G solvation = -3555.228686 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.055 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -41.78491 -40.96040 -39.17149 -37.63697 -35.94109 -33.44917 -32.50152 -32.23049 -31.37024 -28.41311 -27.45962 -25.32942 -24.87024 -23.46710 -21.99788 -20.86180 -20.48757 -19.71847 -18.61940 -17.79331 -17.41925 -16.84255 -16.63941 -16.55590 -16.18469 -15.62304 -15.23974 -14.98570 -14.68869 -14.49783 -14.42234 -13.80321 -13.64009 -13.30213 -13.11184 -12.84351 -12.79940 -12.64910 -12.33104 -12.18108 -12.10140 -12.05177 -11.82391 -11.62838 -11.48993 -11.17340 -10.96576 -10.94679 -10.54435 -10.02923 -9.89786 -8.66023 -7.82690 -5.26775 -1.05905 -0.13244 0.03511 0.93238 0.97800 1.53460 1.57498 1.59271 1.65348 1.90177 2.56229 2.95099 3.34270 3.45604 3.65507 3.78267 3.82284 3.95432 4.09421 4.13679 4.31614 4.34311 4.46055 4.54765 4.77888 4.83898 5.04414 5.08073 5.14184 5.26337 5.33996 5.54894 5.59441 5.72674 6.05649 6.33124 6.39558 6.81083 7.16773 7.82972 8.37116 9.24360 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.019094 B = 0.004083 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.081792 B = 6855.658856 C = 7729.583678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.042 4.042 3 Si 0.961 3.039 4 H -0.297 1.297 5 H -0.266 1.266 6 H -0.294 1.294 7 C -0.253 4.253 8 H 0.075 0.925 9 N -0.597 5.597 10 C 0.181 3.819 11 C 0.099 3.901 12 H 0.102 0.898 13 C -0.104 4.104 14 C -0.103 4.103 15 C 0.121 3.879 16 H 0.102 0.898 17 C 0.135 3.865 18 N -0.603 5.603 19 C 0.609 3.391 20 O -0.555 6.555 21 C -0.027 4.027 22 N -0.429 5.429 23 C 0.082 3.918 24 Cl -0.002 7.002 25 C -0.255 4.255 26 S 0.316 5.684 27 H 0.251 0.749 28 H 0.003 0.997 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.080 0.920 35 H -0.004 1.004 36 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.929 -5.473 -11.035 12.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.237 4.237 3 Si 0.791 3.209 4 H -0.225 1.225 5 H -0.191 1.191 6 H -0.220 1.220 7 C -0.382 4.382 8 H 0.092 0.908 9 N -0.321 5.321 10 C 0.054 3.946 11 C -0.005 4.005 12 H 0.119 0.881 13 C -0.142 4.142 14 C -0.141 4.141 15 C 0.018 3.982 16 H 0.120 0.880 17 C 0.008 3.992 18 N -0.336 5.336 19 C 0.394 3.606 20 O -0.434 6.434 21 C -0.302 4.302 22 N -0.148 5.148 23 C -0.082 4.082 24 Cl 0.026 6.974 25 C -0.397 4.397 26 S 0.571 5.429 27 H 0.060 0.940 28 H 0.021 0.979 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.014 0.986 36 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -3.512 -5.578 -10.675 12.545 hybrid contribution -1.061 0.008 0.590 1.214 sum -4.573 -5.569 -10.085 12.395 Atomic orbital electron populations 1.70129 1.06417 1.25873 1.55735 1.25635 0.95914 1.00926 1.01254 0.85356 0.78550 0.80198 0.76843 1.22499 1.19056 1.22001 1.19482 0.92662 0.84890 1.41204 0.90778 1.44285 1.31744 1.01700 1.54343 1.21228 0.87812 0.96167 0.89391 1.24019 0.99935 0.82053 0.94541 0.88144 1.22277 0.91514 1.01942 0.98497 1.22302 0.97248 0.99145 0.95400 1.22967 0.80299 0.99382 0.95563 0.88029 1.21561 0.98520 0.86155 0.92927 1.49438 1.15792 1.16851 1.51510 1.16328 0.82068 0.82605 0.79566 1.90783 1.78391 1.28076 1.46152 1.26880 0.98772 0.94182 1.10326 1.65975 1.00507 1.34269 1.14015 1.20565 0.90571 0.91040 1.06063 1.98386 1.40754 1.61852 1.96417 1.27426 1.08390 0.96877 1.07004 1.84580 0.99577 1.10133 1.48589 0.93991 0.97922 0.90214 0.89939 0.89218 0.89711 0.89712 0.90174 0.98605 0.75313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -49.47 11.11 21.65 0.24 -49.22 16 2 C -0.04 -2.07 4.96 84.86 0.42 -1.65 16 3 Si 0.96 40.49 29.58 68.60 2.03 42.52 16 4 H -0.30 -12.91 7.11 99.48 0.71 -12.20 16 5 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 6 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 7 C -0.25 -12.09 9.64 84.03 0.81 -11.28 16 8 H 0.07 3.44 7.87 -2.91 -0.02 3.41 16 9 N -0.60 -26.08 2.27 -694.45 -1.58 -27.66 16 10 C 0.18 7.36 4.62 86.70 0.40 7.76 16 11 C 0.10 3.08 3.24 45.33 0.15 3.23 16 12 H 0.10 2.66 4.74 -16.41 -0.08 2.59 16 13 C -0.10 -2.80 6.20 31.56 0.20 -2.61 16 14 C -0.10 -2.75 6.20 31.56 0.20 -2.55 16 15 C 0.12 3.95 4.09 45.45 0.19 4.13 16 16 H 0.10 3.21 7.90 -2.39 -0.02 3.19 16 17 C 0.13 5.21 6.00 86.53 0.52 5.73 16 18 N -0.60 -20.64 2.77 -756.33 -2.10 -22.74 16 19 C 0.61 23.11 7.91 86.61 0.68 23.80 16 20 O -0.56 -24.67 17.37 -4.12 -0.07 -24.75 16 21 C -0.03 -0.91 7.38 87.24 0.64 -0.27 16 22 N -0.43 -14.77 10.60 -181.17 -1.92 -16.69 16 23 C 0.08 2.23 7.22 83.96 0.61 2.84 16 24 Cl 0.00 -0.05 29.20 -2.72 -0.08 -0.13 16 25 C -0.26 -5.36 10.93 66.93 0.73 -4.63 16 26 S 0.32 7.75 18.97 -56.49 -1.07 6.67 16 27 H 0.25 12.98 8.31 -92.71 -0.77 12.21 16 28 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 29 H 0.08 3.57 6.28 -2.39 -0.01 3.56 16 30 H 0.08 2.46 7.89 -2.39 -0.02 2.44 16 31 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.08 2.35 7.84 -2.39 -0.02 2.34 16 33 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.08 2.87 7.96 -2.39 -0.02 2.85 16 35 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 36 H 0.23 2.86 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -64.32 321.01 2.05 -62.27 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: 1.06 Total: 5.21 kcal Atomic # 6 Polarization: 18.97 SS G_CDS: 5.54 Total: 24.52 kcal Atomic # 7 Polarization: -110.95 SS G_CDS: -5.36 Total: -116.31 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.07 Total: -24.75 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.52 kcal Atomic # 16 Polarization: 7.75 SS G_CDS: -1.07 Total: 6.67 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -0.08 Total: -0.13 kcal Total: -64.32 2.05 -62.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017849127.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.531 kcal (2) G-P(sol) polarization free energy of solvation -64.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds