Wall clock time and date at job start Tue Mar 31 2020 15:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 120.00175 * 2 1 4 4 H 1.48495 * 109.47180 * 274.48200 * 3 2 1 5 5 H 1.48500 * 109.46927 * 34.47868 * 3 2 1 6 6 H 1.48496 * 109.46945 * 154.47794 * 3 2 1 7 7 C 1.38809 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00481 * 163.54456 * 7 2 1 9 9 N 1.36942 * 119.99831 * 343.54771 * 7 2 1 10 10 C 1.47167 * 120.70921 * 154.46844 * 9 7 2 11 11 C 1.53886 * 108.02942 * 132.75406 * 10 9 7 12 12 H 1.08999 * 112.09333 * 181.91250 * 11 10 9 13 13 C 1.54797 * 107.88434 * 306.48141 * 11 10 9 14 14 C 1.54279 * 104.72943 * 89.01197 * 13 11 10 15 15 C 1.54547 * 104.94265 * 0.07988 * 14 13 11 16 16 H 1.09003 * 112.18032 * 146.35865 * 15 14 13 17 17 C 1.48358 * 120.34715 * 334.31169 * 9 7 2 18 18 N 1.48306 * 107.20573 * 58.36566 * 11 10 9 19 19 C 1.34777 * 128.07827 * 106.68148 * 18 11 10 20 20 O 1.21640 * 119.99664 * 180.02562 * 19 18 11 21 21 C 1.47236 * 119.99743 * 0.02564 * 19 18 11 22 22 C 1.35159 * 123.13440 * 180.02562 * 21 19 18 23 23 S 1.70937 * 108.86221 * 179.97438 * 22 21 19 24 24 C 1.70771 * 91.14535 * 359.97438 * 23 22 21 25 25 Cl 1.73603 * 124.72293 * 180.02562 * 24 23 22 26 26 N 1.28760 * 110.55137 * 359.75379 * 24 23 22 27 27 H 0.97000 * 120.00134 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.75038 * 13.11963 * 10 9 7 29 29 H 1.09001 * 109.78842 * 252.41374 * 10 9 7 30 30 H 1.09002 * 110.39811 * 330.22677 * 13 11 10 31 31 H 1.08994 * 110.44580 * 207.83008 * 13 11 10 32 32 H 1.09002 * 110.36747 * 241.18189 * 14 13 11 33 33 H 1.09002 * 110.36407 * 118.97737 * 14 13 11 34 34 H 1.09002 * 109.49798 * 107.72504 * 17 9 7 35 35 H 1.09004 * 110.61817 * 346.60472 * 17 9 7 36 36 H 1.07995 * 125.56964 * 359.94830 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4030 2.1011 -1.3957 5 1 1.4982 2.6235 0.7926 6 1 3.5919 1.4146 0.6032 7 6 2.0102 -1.2021 -0.0005 8 1 3.0571 -1.2212 -0.2655 9 7 1.3676 -2.3639 0.3348 10 6 1.8496 -3.6610 -0.1661 11 6 1.9007 -4.6404 1.0198 12 1 2.2829 -5.6185 0.7276 13 6 2.7402 -3.9840 2.1425 14 6 1.7207 -3.1796 2.9754 15 6 0.3603 -3.4235 2.2838 16 1 -0.4650 -3.4457 2.9955 17 6 0.1732 -2.3329 1.2143 18 7 0.5311 -4.7193 1.5830 19 6 -0.3524 -5.7320 1.4813 20 8 -1.4462 -5.6398 2.0055 21 6 0.0064 -6.9499 0.7357 22 6 -0.8296 -8.0023 0.5934 23 16 -0.0478 -9.2080 -0.3324 24 6 1.3504 -8.2382 -0.4775 25 17 2.7892 -8.6993 -1.3326 26 7 1.1868 -7.1153 0.1308 27 1 -0.4850 0.8400 -0.0004 28 1 2.8467 -3.5444 -0.5908 29 1 1.1672 -4.0394 -0.9272 30 1 3.4908 -3.3184 1.7160 31 1 3.2152 -4.7474 2.7587 32 1 1.9700 -2.1186 2.9585 33 1 1.6957 -3.5462 4.0016 34 1 -0.7186 -2.5447 0.6244 35 1 0.0753 -1.3592 1.6944 36 1 -1.8282 -8.0706 0.9988 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018147930.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:44 Heat of formation + Delta-G solvation = 57.603517 kcal Electronic energy + Delta-G solvation = -24051.819014 eV Core-core repulsion = 20497.429091 eV Total energy + Delta-G solvation = -3554.389923 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.055 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -40.70622 -39.34269 -37.61241 -37.08590 -34.01801 -31.27799 -31.08243 -30.54941 -30.22176 -26.51482 -25.76814 -23.56562 -23.48589 -22.06695 -20.36171 -19.97232 -19.45549 -17.97133 -16.81841 -16.42316 -15.89092 -15.53521 -15.12550 -14.93474 -14.42050 -14.12996 -14.11657 -13.39783 -13.09491 -12.80788 -12.78407 -12.31630 -12.06577 -11.98595 -11.84104 -11.69881 -11.47119 -11.10281 -10.81271 -10.63351 -10.47476 -10.32212 -10.01826 -9.97871 -9.94845 -9.82842 -9.62399 -9.41653 -9.14159 -8.52444 -8.18050 -6.66976 -5.77880 -3.18991 0.18409 0.42318 1.19699 1.56577 1.80000 3.34009 3.37491 3.44913 3.46443 3.51631 4.16648 4.49168 4.86893 4.97792 5.19463 5.29961 5.39396 5.49665 5.51331 5.66218 5.88059 5.98031 6.18858 6.37484 6.46883 6.49087 6.49232 6.63849 6.71588 6.87303 7.00060 7.05010 7.30499 7.56526 7.77269 8.06235 8.37728 8.45643 9.16840 9.81222 10.38767 11.30663 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.018757 B = 0.003983 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.395720 B = 7028.744243 C = 7667.051199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.249 4.249 8 H 0.068 0.932 9 N -0.591 5.591 10 C 0.145 3.855 11 C 0.098 3.902 12 H 0.122 0.878 13 C -0.112 4.112 14 C -0.112 4.112 15 C 0.104 3.896 16 H 0.088 0.912 17 C 0.176 3.824 18 N -0.582 5.582 19 C 0.602 3.398 20 O -0.548 6.548 21 C 0.040 3.960 22 C -0.226 4.226 23 S 0.266 5.734 24 C 0.045 3.955 25 Cl 0.031 6.969 26 N -0.420 5.420 27 H 0.254 0.746 28 H 0.062 0.938 29 H 0.016 0.984 30 H 0.081 0.919 31 H 0.051 0.949 32 H 0.087 0.913 33 H 0.050 0.950 34 H 0.025 0.975 35 H 0.094 0.906 36 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.985 -19.751 0.987 19.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.379 4.379 8 H 0.085 0.915 9 N -0.315 5.315 10 C 0.018 3.982 11 C -0.006 4.006 12 H 0.139 0.861 13 C -0.150 4.150 14 C -0.151 4.151 15 C 0.000 4.000 16 H 0.106 0.894 17 C 0.050 3.950 18 N -0.312 5.312 19 C 0.387 3.613 20 O -0.428 6.428 21 C -0.095 4.095 22 C -0.368 4.368 23 S 0.518 5.482 24 C -0.259 4.259 25 Cl 0.058 6.942 26 N -0.138 5.138 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.034 0.966 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.105 0.895 33 H 0.068 0.932 34 H 0.043 0.957 35 H 0.112 0.888 36 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 2.574 -20.211 0.792 20.390 hybrid contribution 0.349 1.765 0.194 1.809 sum 2.923 -18.446 0.986 18.702 Atomic orbital electron populations 1.70029 1.05219 1.25475 1.54264 1.25000 0.95253 0.98275 1.01123 0.86303 0.79158 0.83882 0.77578 1.21593 1.21618 1.20424 1.19179 0.92407 0.84518 1.41762 0.91473 1.44396 1.32079 1.01065 1.53971 1.21367 0.97982 0.86494 0.92397 1.23557 0.80701 1.01111 0.95246 0.86090 1.22357 0.97915 0.98391 0.96378 1.22327 0.94145 1.01825 0.96765 1.23321 0.97732 0.83022 0.95897 0.89404 1.21484 0.88755 0.95571 0.89199 1.49000 1.15658 1.15551 1.51013 1.16459 0.83836 0.80710 0.80276 1.90797 1.21697 1.80775 1.49489 1.20359 0.88848 0.97691 1.02597 1.26751 1.07099 0.97480 1.05443 1.82854 1.03686 1.17156 1.44483 1.27292 0.97330 0.96312 1.05013 1.98442 1.33118 1.89646 1.72948 1.66834 1.20450 1.17897 1.08599 0.93603 0.92013 0.96617 0.90002 0.93056 0.89468 0.93166 0.95700 0.88785 0.78523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.11 11.11 55.49 0.62 -25.50 16 2 C 0.00 0.05 4.96 -17.43 -0.09 -0.04 16 3 Si 0.90 21.35 29.58 -169.99 -5.03 16.32 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.25 -6.61 9.64 -15.06 -0.15 -6.75 16 8 H 0.07 1.74 7.87 -52.48 -0.41 1.33 16 9 N -0.59 -14.49 2.31 -170.09 -0.39 -14.88 16 10 C 0.14 3.08 6.03 -3.22 -0.02 3.06 16 11 C 0.10 1.80 3.74 -65.53 -0.25 1.55 16 12 H 0.12 2.06 5.25 -51.93 -0.27 1.79 16 13 C -0.11 -1.91 6.21 -25.12 -0.16 -2.07 16 14 C -0.11 -2.02 6.17 -25.25 -0.16 -2.18 16 15 C 0.10 2.11 4.07 -65.66 -0.27 1.84 16 16 H 0.09 1.76 7.93 -51.93 -0.41 1.35 16 17 C 0.18 4.26 4.63 -2.55 -0.01 4.25 16 18 N -0.58 -11.38 2.75 -154.19 -0.42 -11.81 16 19 C 0.60 11.59 7.90 -12.60 -0.10 11.49 16 20 O -0.55 -11.70 17.02 5.24 0.09 -11.61 16 21 C 0.04 0.62 6.64 -84.51 -0.56 0.06 16 22 C -0.23 -2.68 10.61 29.64 0.31 -2.36 16 23 S 0.27 2.30 22.96 -107.50 -2.47 -0.17 16 24 C 0.04 0.52 7.98 51.47 0.41 0.93 16 25 Cl 0.03 0.31 29.33 -51.86 -1.52 -1.22 16 26 N -0.42 -6.16 7.34 -9.45 -0.07 -6.23 16 27 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.06 1.25 7.96 -51.93 -0.41 0.84 16 29 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 1.45 7.85 -51.93 -0.41 1.04 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.09 1.69 7.83 -51.93 -0.41 1.29 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 2.47 6.35 -51.93 -0.33 2.14 16 36 H 0.20 2.05 8.03 -52.49 -0.42 1.63 16 LS Contribution 322.26 15.07 4.86 4.86 Total: -1.00 -31.18 322.26 -9.27 -40.44 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -3.90 Total: 0.01 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: -1.02 Total: 9.77 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: -0.27 Total: -58.41 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.09 Total: -11.61 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -2.47 Total: -0.17 kcal Atomic # 17 Polarization: 0.31 SS G_CDS: -1.52 Total: -1.22 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.18 -9.27 -40.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018147930.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.047 kcal (2) G-P(sol) polarization free energy of solvation -31.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds