Wall clock time and date at job start Tue Mar 31 2020 15:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 120.00175 * 2 1 4 4 H 1.48495 * 109.47180 * 274.48200 * 3 2 1 5 5 H 1.48500 * 109.46927 * 34.47868 * 3 2 1 6 6 H 1.48496 * 109.46945 * 154.47794 * 3 2 1 7 7 C 1.38809 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00481 * 163.54456 * 7 2 1 9 9 N 1.36942 * 119.99831 * 343.54771 * 7 2 1 10 10 C 1.47167 * 120.70921 * 154.46844 * 9 7 2 11 11 C 1.53886 * 108.02942 * 132.75406 * 10 9 7 12 12 H 1.08999 * 112.09333 * 181.91250 * 11 10 9 13 13 C 1.54797 * 107.88434 * 306.48141 * 11 10 9 14 14 C 1.54279 * 104.72943 * 89.01197 * 13 11 10 15 15 C 1.54547 * 104.94265 * 0.07988 * 14 13 11 16 16 H 1.09003 * 112.18032 * 146.35865 * 15 14 13 17 17 C 1.48358 * 120.34715 * 334.31169 * 9 7 2 18 18 N 1.48306 * 107.20573 * 58.36566 * 11 10 9 19 19 C 1.34777 * 128.07827 * 106.68148 * 18 11 10 20 20 O 1.21640 * 119.99664 * 180.02562 * 19 18 11 21 21 C 1.47236 * 119.99743 * 0.02564 * 19 18 11 22 22 C 1.35159 * 123.13440 * 180.02562 * 21 19 18 23 23 S 1.70937 * 108.86221 * 179.97438 * 22 21 19 24 24 C 1.70771 * 91.14535 * 359.97438 * 23 22 21 25 25 Cl 1.73603 * 124.72293 * 180.02562 * 24 23 22 26 26 N 1.28760 * 110.55137 * 359.75379 * 24 23 22 27 27 H 0.97000 * 120.00134 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.75038 * 13.11963 * 10 9 7 29 29 H 1.09001 * 109.78842 * 252.41374 * 10 9 7 30 30 H 1.09002 * 110.39811 * 330.22677 * 13 11 10 31 31 H 1.08994 * 110.44580 * 207.83008 * 13 11 10 32 32 H 1.09002 * 110.36747 * 241.18189 * 14 13 11 33 33 H 1.09002 * 110.36407 * 118.97737 * 14 13 11 34 34 H 1.09002 * 109.49798 * 107.72504 * 17 9 7 35 35 H 1.09004 * 110.61817 * 346.60472 * 17 9 7 36 36 H 1.07995 * 125.56964 * 359.94830 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4030 2.1011 -1.3957 5 1 1.4982 2.6235 0.7926 6 1 3.5919 1.4146 0.6032 7 6 2.0102 -1.2021 -0.0005 8 1 3.0571 -1.2212 -0.2655 9 7 1.3676 -2.3639 0.3348 10 6 1.8496 -3.6610 -0.1661 11 6 1.9007 -4.6404 1.0198 12 1 2.2829 -5.6185 0.7276 13 6 2.7402 -3.9840 2.1425 14 6 1.7207 -3.1796 2.9754 15 6 0.3603 -3.4235 2.2838 16 1 -0.4650 -3.4457 2.9955 17 6 0.1732 -2.3329 1.2143 18 7 0.5311 -4.7193 1.5830 19 6 -0.3524 -5.7320 1.4813 20 8 -1.4462 -5.6398 2.0055 21 6 0.0064 -6.9499 0.7357 22 6 -0.8296 -8.0023 0.5934 23 16 -0.0478 -9.2080 -0.3324 24 6 1.3504 -8.2382 -0.4775 25 17 2.7892 -8.6993 -1.3326 26 7 1.1868 -7.1153 0.1308 27 1 -0.4850 0.8400 -0.0004 28 1 2.8467 -3.5444 -0.5908 29 1 1.1672 -4.0394 -0.9272 30 1 3.4908 -3.3184 1.7160 31 1 3.2152 -4.7474 2.7587 32 1 1.9700 -2.1186 2.9585 33 1 1.6957 -3.5462 4.0016 34 1 -0.7186 -2.5447 0.6244 35 1 0.0753 -1.3592 1.6944 36 1 -1.8282 -8.0706 0.9988 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018147930.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:42 Heat of formation + Delta-G solvation = 38.369421 kcal Electronic energy + Delta-G solvation = -24052.653067 eV Core-core repulsion = 20497.429091 eV Total energy + Delta-G solvation = -3555.223976 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.055 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -42.00412 -40.66134 -39.05827 -37.95125 -35.92336 -33.04861 -32.68613 -31.96301 -31.58315 -28.21090 -27.05720 -25.26201 -25.00467 -23.61288 -21.81392 -21.35716 -20.59339 -19.60603 -18.34880 -17.65751 -17.33070 -16.83839 -16.66520 -16.34553 -16.18303 -15.51435 -15.25278 -15.01195 -14.86132 -14.44805 -14.30185 -13.76505 -13.56023 -13.22248 -13.12391 -12.92916 -12.87415 -12.67207 -12.54948 -12.28101 -12.15731 -12.07835 -11.78922 -11.63885 -11.33649 -11.17370 -10.83752 -10.69214 -10.59084 -10.10372 -9.77833 -8.68525 -7.85394 -5.30580 -0.73457 -0.38670 0.29360 0.66001 0.71878 1.48183 1.50000 1.59885 1.93324 2.17143 2.52116 3.04566 3.30029 3.47929 3.74209 3.83918 3.96708 4.04651 4.13101 4.22047 4.37747 4.41351 4.54583 4.80547 4.84732 5.00099 5.01971 5.07557 5.12106 5.22839 5.35084 5.51814 5.59766 5.66446 6.04719 6.32684 6.58006 6.98240 7.09236 7.79091 8.34934 9.21495 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.018757 B = 0.003983 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.395720 B = 7028.744243 C = 7667.051199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.052 4.052 3 Si 0.968 3.032 4 H -0.291 1.291 5 H -0.296 1.296 6 H -0.263 1.263 7 C -0.252 4.252 8 H 0.076 0.924 9 N -0.601 5.601 10 C 0.144 3.856 11 C 0.112 3.888 12 H 0.141 0.859 13 C -0.105 4.105 14 C -0.104 4.104 15 C 0.107 3.893 16 H 0.085 0.915 17 C 0.190 3.810 18 N -0.590 5.590 19 C 0.596 3.404 20 O -0.581 6.581 21 C 0.004 3.996 22 C -0.226 4.226 23 S 0.393 5.607 24 C 0.021 3.979 25 Cl 0.043 6.957 26 N -0.450 5.450 27 H 0.248 0.752 28 H 0.073 0.927 29 H -0.008 1.008 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.077 0.923 34 H -0.023 1.023 35 H 0.068 0.932 36 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.714 -22.455 1.053 22.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.247 4.247 3 Si 0.796 3.204 4 H -0.218 1.218 5 H -0.223 1.223 6 H -0.188 1.188 7 C -0.382 4.382 8 H 0.094 0.906 9 N -0.325 5.325 10 C 0.018 3.982 11 C 0.008 3.992 12 H 0.158 0.842 13 C -0.144 4.144 14 C -0.142 4.142 15 C 0.003 3.997 16 H 0.103 0.897 17 C 0.064 3.936 18 N -0.320 5.320 19 C 0.384 3.616 20 O -0.462 6.462 21 C -0.131 4.131 22 C -0.369 4.369 23 S 0.646 5.354 24 C -0.282 4.282 25 Cl 0.070 6.930 26 N -0.169 5.169 27 H 0.057 0.943 28 H 0.091 0.909 29 H 0.010 0.990 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.096 0.904 34 H -0.005 1.005 35 H 0.086 0.914 36 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 4.350 -22.968 0.841 23.392 hybrid contribution -0.270 2.403 0.044 2.418 sum 4.081 -20.566 0.885 20.985 Atomic orbital electron populations 1.70216 1.06904 1.25734 1.56158 1.25775 0.95889 1.01502 1.01523 0.85246 0.78385 0.79592 0.77131 1.21778 1.22264 1.18757 1.19559 0.92853 0.85291 1.40510 0.90602 1.44588 1.31747 1.01904 1.54273 1.21481 0.97583 0.85753 0.93385 1.23488 0.80466 1.01078 0.94206 0.84154 1.22354 0.97228 0.98799 0.95976 1.22245 0.92604 1.01140 0.98209 1.23052 0.99378 0.82622 0.94659 0.89680 1.21121 0.87145 0.95809 0.89508 1.49074 1.16333 1.15280 1.51306 1.17072 0.83113 0.81654 0.79788 1.90756 1.22824 1.81783 1.50884 1.19809 0.90717 0.97397 1.05149 1.27118 1.07409 0.97754 1.04625 1.82486 0.99540 1.12877 1.40510 1.27591 0.99040 0.96667 1.04868 1.98448 1.32747 1.89278 1.72492 1.66636 1.20618 1.19839 1.09770 0.94270 0.90865 0.99040 0.90457 0.89906 0.91204 0.90397 1.00460 0.91396 0.77446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.90 11.11 21.65 0.24 -56.66 16 2 C -0.05 -2.91 4.96 84.86 0.42 -2.49 16 3 Si 0.97 44.66 29.58 68.60 2.03 46.69 16 4 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 5 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 6 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 7 C -0.25 -13.58 9.64 84.03 0.81 -12.77 16 8 H 0.08 3.90 7.87 -2.91 -0.02 3.87 16 9 N -0.60 -30.36 2.31 -692.06 -1.60 -31.96 16 10 C 0.14 6.21 6.03 86.55 0.52 6.73 16 11 C 0.11 3.99 3.74 45.56 0.17 4.16 16 12 H 0.14 4.58 5.25 -2.39 -0.01 4.57 16 13 C -0.11 -3.40 6.21 31.64 0.20 -3.20 16 14 C -0.10 -3.66 6.17 31.55 0.19 -3.46 16 15 C 0.11 4.49 4.07 45.47 0.19 4.67 16 16 H 0.09 3.57 7.93 -2.39 -0.02 3.55 16 17 C 0.19 9.79 4.63 86.32 0.40 10.19 16 18 N -0.59 -23.36 2.75 -759.99 -2.09 -25.45 16 19 C 0.60 23.24 7.90 86.61 0.68 23.92 16 20 O -0.58 -25.44 17.02 -4.16 -0.07 -25.51 16 21 C 0.00 0.12 6.64 40.52 0.27 0.39 16 22 C -0.23 -4.87 10.61 67.11 0.71 -4.16 16 23 S 0.39 5.29 22.96 -56.49 -1.30 3.99 16 24 C 0.02 0.44 7.98 130.69 1.04 1.48 16 25 Cl 0.04 0.74 29.33 -2.72 -0.08 0.66 16 26 N -0.45 -12.50 7.34 -183.80 -1.35 -13.85 16 27 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 28 H 0.07 2.94 7.96 -2.39 -0.02 2.92 16 29 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 30 H 0.08 2.59 7.85 -2.39 -0.02 2.57 16 31 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.07 2.72 7.83 -2.39 -0.02 2.70 16 33 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 34 H -0.02 -1.35 8.14 -2.39 -0.02 -1.37 16 35 H 0.07 3.81 6.35 -2.38 -0.02 3.79 16 36 H 0.21 3.90 8.03 -2.91 -0.02 3.87 16 Total: -1.00 -71.26 322.26 2.51 -68.75 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: 1.12 Total: 7.88 kcal Atomic # 6 Polarization: 19.85 SS G_CDS: 5.61 Total: 25.46 kcal Atomic # 7 Polarization: -123.12 SS G_CDS: -4.80 Total: -127.92 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.07 Total: -25.51 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Atomic # 16 Polarization: 5.29 SS G_CDS: -1.30 Total: 3.99 kcal Atomic # 17 Polarization: 0.74 SS G_CDS: -0.08 Total: 0.66 kcal Total: -71.26 2.51 -68.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018147930.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.117 kcal (2) G-P(sol) polarization free energy of solvation -71.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds