Wall clock time and date at job start Tue Mar 31 2020 15:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99769 * 2 1 4 4 H 1.48506 * 109.47005 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47383 * 299.99635 * 3 2 1 6 6 H 1.48503 * 109.47041 * 59.99766 * 3 2 1 7 7 C 1.38814 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99791 * 183.77916 * 7 2 1 9 9 N 1.36939 * 120.00026 * 3.77996 * 7 2 1 10 10 C 1.47163 * 120.70576 * 145.55555 * 9 7 2 11 11 C 1.53889 * 108.02461 * 132.75832 * 10 9 7 12 12 H 1.09005 * 112.09257 * 182.54769 * 11 10 9 13 13 C 1.54551 * 107.83131 * 306.50352 * 11 10 9 14 14 C 1.54274 * 104.84752 * 89.07434 * 13 11 10 15 15 C 1.54549 * 104.85176 * 0.02562 * 14 13 11 16 16 H 1.08991 * 112.18204 * 146.40986 * 15 14 13 17 17 C 1.48364 * 120.34579 * 325.40357 * 9 7 2 18 18 N 1.48300 * 104.35433 * 24.69988 * 15 14 13 19 19 C 1.34779 * 128.07313 * 139.08218 * 18 15 14 20 20 O 1.21704 * 119.99974 * 3.84439 * 19 18 15 21 21 C 1.46526 * 119.99868 * 183.84393 * 19 18 15 22 22 S 1.76215 * 126.17727 * 352.99153 * 21 19 18 23 23 C 1.70920 * 90.38562 * 179.97438 * 22 21 19 24 24 N 1.29360 * 110.62493 * 359.97438 * 23 22 21 25 25 C 1.31036 * 117.45267 * 359.74752 * 24 23 22 26 26 Cl 1.73608 * 123.05703 * 180.26878 * 25 24 23 27 27 H 0.96998 * 120.00250 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.75236 * 13.13014 * 10 9 7 29 29 H 1.08994 * 109.79234 * 252.41077 * 10 9 7 30 30 H 1.08999 * 110.36244 * 330.23168 * 13 11 10 31 31 H 1.08996 * 110.45347 * 207.96715 * 13 11 10 32 32 H 1.09005 * 110.36161 * 241.15600 * 14 13 11 33 33 H 1.09004 * 110.45732 * 118.89250 * 14 13 11 34 34 H 1.08998 * 110.02294 * 107.42452 * 17 9 7 35 35 H 1.09000 * 110.09124 * 346.29977 * 17 9 7 36 36 H 1.08007 * 124.68635 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0885 -1.2031 0.0622 9 7 1.3278 -2.3868 -0.0771 10 6 1.8969 -3.5359 -0.7992 11 6 1.7521 -4.7797 0.0954 12 1 2.1949 -5.6657 -0.3595 13 6 2.3827 -4.4515 1.4678 14 6 1.2322 -3.8431 2.2961 15 6 0.0107 -3.8595 1.3494 16 1 -0.9233 -4.0275 1.8856 17 6 0.0010 -2.5314 0.5708 18 7 0.3071 -4.9469 0.3856 19 6 -0.5391 -5.8710 -0.1109 20 8 -1.7211 -5.8302 0.1760 21 6 -0.0359 -6.9246 -0.9961 22 16 1.5948 -7.0397 -1.6541 23 6 1.1761 -8.4818 -2.4703 24 7 -0.0577 -8.7945 -2.2393 25 6 -0.7455 -8.0006 -1.4559 26 17 -2.4078 -8.2848 -1.0435 27 1 -0.4850 0.8400 -0.0004 28 1 2.9509 -3.3539 -1.0091 29 1 1.3565 -3.6893 -1.7333 30 1 3.1898 -3.7282 1.3511 31 1 2.7537 -5.3593 1.9433 32 1 1.4736 -2.8206 2.5868 33 1 1.0354 -4.4512 3.1791 34 1 -0.7833 -2.5538 -0.1857 35 1 -0.1725 -1.7030 1.2577 36 1 1.8488 -9.0532 -3.0929 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018276756.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:53 Heat of formation + Delta-G solvation = 57.747645 kcal Electronic energy + Delta-G solvation = -24089.738480 eV Core-core repulsion = 20535.354807 eV Total energy + Delta-G solvation = -3554.383673 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.055 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -40.35544 -39.73177 -37.63817 -36.51744 -34.15903 -31.77913 -31.32484 -30.46982 -29.99641 -26.64406 -25.92689 -23.78609 -23.35262 -22.03037 -20.63911 -19.76695 -19.39217 -18.20358 -17.02358 -16.20489 -16.11250 -15.39413 -15.21503 -14.81825 -14.61209 -14.46229 -14.08044 -13.45821 -13.15007 -13.03342 -12.91912 -12.49595 -12.04270 -11.95395 -11.74894 -11.60698 -11.15945 -11.05087 -10.97514 -10.80536 -10.56136 -10.41368 -10.15394 -10.04791 -9.84748 -9.79132 -9.62733 -9.56619 -8.98130 -8.59149 -8.32532 -6.69925 -5.90716 -3.43150 0.02554 0.81498 1.24662 2.09874 2.23942 3.12044 3.28091 3.30577 3.37597 3.39178 4.20872 4.36086 4.61786 4.76598 4.89463 5.15036 5.24101 5.31175 5.38043 5.41660 5.65694 5.69248 5.93980 6.07134 6.20490 6.28199 6.34593 6.48328 6.52838 6.63238 6.85093 7.18682 7.26382 7.57653 7.67367 7.88010 8.31958 8.35615 9.06890 9.65860 10.26630 11.16610 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.021038 B = 0.004082 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.616448 B = 6856.904334 C = 7267.724383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.014 3.986 3 Si 0.903 3.097 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.259 4.259 8 H 0.067 0.933 9 N -0.589 5.589 10 C 0.141 3.859 11 C 0.104 3.896 12 H 0.078 0.922 13 C -0.109 4.109 14 C -0.112 4.112 15 C 0.107 3.893 16 H 0.091 0.909 17 C 0.173 3.827 18 N -0.600 5.600 19 C 0.603 3.397 20 O -0.519 6.519 21 C -0.267 4.267 22 S 0.236 5.764 23 C 0.006 3.994 24 N -0.473 5.473 25 C 0.171 3.829 26 Cl 0.024 6.976 27 H 0.256 0.744 28 H 0.068 0.932 29 H 0.021 0.979 30 H 0.086 0.914 31 H 0.055 0.945 32 H 0.090 0.910 33 H 0.053 0.947 34 H 0.027 0.973 35 H 0.102 0.898 36 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.729 -14.565 -0.754 15.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.186 4.186 3 Si 0.732 3.268 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.388 4.388 8 H 0.085 0.915 9 N -0.313 5.313 10 C 0.013 3.987 11 C -0.002 4.002 12 H 0.095 0.905 13 C -0.147 4.147 14 C -0.151 4.151 15 C 0.004 3.996 16 H 0.109 0.891 17 C 0.047 3.953 18 N -0.333 5.333 19 C 0.389 3.611 20 O -0.397 6.397 21 C -0.393 4.393 22 S 0.491 5.509 23 C -0.289 4.289 24 N -0.188 5.188 25 C 0.006 3.994 26 Cl 0.052 6.948 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.039 0.961 30 H 0.105 0.895 31 H 0.074 0.926 32 H 0.109 0.891 33 H 0.071 0.929 34 H 0.046 0.954 35 H 0.120 0.880 36 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 5.501 -14.402 -0.837 15.439 hybrid contribution -0.551 0.480 -0.107 0.738 sum 4.950 -13.922 -0.945 14.806 Atomic orbital electron populations 1.69917 1.05390 1.25711 1.53484 1.25327 0.95502 0.98331 0.99443 0.86223 0.79325 0.83858 0.77361 1.20186 1.21517 1.21608 1.19143 0.90683 0.82774 1.46245 0.91492 1.44267 1.19019 1.09064 1.58911 1.21458 0.98198 0.86726 0.92320 1.23359 0.80521 0.97946 0.98401 0.90506 1.22293 0.98729 1.00104 0.93583 1.22344 0.94138 1.02216 0.96384 1.23372 0.98014 0.88318 0.89866 0.89111 1.21675 0.86720 0.91535 0.95370 1.49063 1.09882 1.29648 1.44711 1.16060 0.85357 0.79741 0.79906 1.90867 1.14555 1.74258 1.59977 1.25827 0.98307 1.03732 1.11438 1.84473 1.08027 1.20100 1.38350 1.28946 0.94983 1.01876 1.03062 1.65716 1.06357 1.30892 1.15800 1.21041 0.90864 0.91049 0.96428 1.98431 1.09728 1.95716 1.90914 0.93310 0.91377 0.96120 0.89505 0.92605 0.89142 0.92860 0.95449 0.87968 0.77597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.70 10.71 55.49 0.59 -24.11 16 2 C 0.01 0.35 5.32 -17.43 -0.09 0.26 16 3 Si 0.90 20.34 29.56 -169.99 -5.02 15.32 16 4 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.26 -6.39 9.59 -15.06 -0.14 -6.53 16 8 H 0.07 1.60 7.83 -52.49 -0.41 1.19 16 9 N -0.59 -13.27 2.31 -170.06 -0.39 -13.66 16 10 C 0.14 2.61 6.03 -3.22 -0.02 2.59 16 11 C 0.10 1.62 3.56 -65.64 -0.23 1.39 16 12 H 0.08 1.00 3.94 -23.81 -0.09 0.91 16 13 C -0.11 -1.59 6.18 -25.25 -0.16 -1.74 16 14 C -0.11 -1.82 6.18 -25.25 -0.16 -1.98 16 15 C 0.11 2.02 4.07 -65.63 -0.27 1.76 16 16 H 0.09 1.72 7.96 -51.93 -0.41 1.31 16 17 C 0.17 3.93 4.57 -2.52 -0.01 3.91 16 18 N -0.60 -10.75 2.76 -154.55 -0.43 -11.17 16 19 C 0.60 11.26 7.87 -12.92 -0.10 11.16 16 20 O -0.52 -11.04 15.54 5.18 0.08 -10.96 16 21 C -0.27 -4.20 6.45 -36.75 -0.24 -4.44 16 22 S 0.24 2.60 18.93 -107.50 -2.03 0.56 16 23 C 0.01 0.06 12.20 51.72 0.63 0.69 16 24 N -0.47 -6.49 10.50 -12.21 -0.13 -6.62 16 25 C 0.17 2.68 7.41 -18.39 -0.14 2.54 16 26 Cl 0.02 0.37 27.42 -51.86 -1.42 -1.05 16 27 H 0.26 6.86 8.31 -40.82 -0.34 6.53 16 28 H 0.07 1.16 7.97 -51.93 -0.41 0.75 16 29 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 1.31 7.84 -51.93 -0.41 0.90 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.09 1.60 7.83 -51.93 -0.41 1.19 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.10 2.55 6.37 -51.93 -0.33 2.22 16 36 H 0.21 1.15 8.06 -52.48 -0.42 0.73 16 LS Contribution 317.13 15.07 4.78 4.78 Total: -1.00 -30.20 317.13 -8.62 -38.82 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -3.72 Total: -1.51 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: -0.92 Total: 9.59 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: -0.35 Total: -55.56 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.08 Total: -10.96 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 16 Polarization: 2.60 SS G_CDS: -2.03 Total: 0.56 kcal Atomic # 17 Polarization: 0.37 SS G_CDS: -1.42 Total: -1.05 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.20 -8.62 -38.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018276756.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.571 kcal (2) G-P(sol) polarization free energy of solvation -30.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds