Wall clock time and date at job start Tue Mar 31 2020 15:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99769 * 2 1 4 4 H 1.48506 * 109.47005 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47383 * 299.99635 * 3 2 1 6 6 H 1.48503 * 109.47041 * 59.99766 * 3 2 1 7 7 C 1.38814 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99791 * 183.77916 * 7 2 1 9 9 N 1.36939 * 120.00026 * 3.77996 * 7 2 1 10 10 C 1.47163 * 120.70576 * 145.55555 * 9 7 2 11 11 C 1.53889 * 108.02461 * 132.75832 * 10 9 7 12 12 H 1.09005 * 112.09257 * 182.54769 * 11 10 9 13 13 C 1.54551 * 107.83131 * 306.50352 * 11 10 9 14 14 C 1.54274 * 104.84752 * 89.07434 * 13 11 10 15 15 C 1.54549 * 104.85176 * 0.02562 * 14 13 11 16 16 H 1.08991 * 112.18204 * 146.40986 * 15 14 13 17 17 C 1.48364 * 120.34579 * 325.40357 * 9 7 2 18 18 N 1.48300 * 104.35433 * 24.69988 * 15 14 13 19 19 C 1.34779 * 128.07313 * 139.08218 * 18 15 14 20 20 O 1.21704 * 119.99974 * 3.84439 * 19 18 15 21 21 C 1.46526 * 119.99868 * 183.84393 * 19 18 15 22 22 S 1.76215 * 126.17727 * 352.99153 * 21 19 18 23 23 C 1.70920 * 90.38562 * 179.97438 * 22 21 19 24 24 N 1.29360 * 110.62493 * 359.97438 * 23 22 21 25 25 C 1.31036 * 117.45267 * 359.74752 * 24 23 22 26 26 Cl 1.73608 * 123.05703 * 180.26878 * 25 24 23 27 27 H 0.96998 * 120.00250 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.75236 * 13.13014 * 10 9 7 29 29 H 1.08994 * 109.79234 * 252.41077 * 10 9 7 30 30 H 1.08999 * 110.36244 * 330.23168 * 13 11 10 31 31 H 1.08996 * 110.45347 * 207.96715 * 13 11 10 32 32 H 1.09005 * 110.36161 * 241.15600 * 14 13 11 33 33 H 1.09004 * 110.45732 * 118.89250 * 14 13 11 34 34 H 1.08998 * 110.02294 * 107.42452 * 17 9 7 35 35 H 1.09000 * 110.09124 * 346.29977 * 17 9 7 36 36 H 1.08007 * 124.68635 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0885 -1.2031 0.0622 9 7 1.3278 -2.3868 -0.0771 10 6 1.8969 -3.5359 -0.7992 11 6 1.7521 -4.7797 0.0954 12 1 2.1949 -5.6657 -0.3595 13 6 2.3827 -4.4515 1.4678 14 6 1.2322 -3.8431 2.2961 15 6 0.0107 -3.8595 1.3494 16 1 -0.9233 -4.0275 1.8856 17 6 0.0010 -2.5314 0.5708 18 7 0.3071 -4.9469 0.3856 19 6 -0.5391 -5.8710 -0.1109 20 8 -1.7211 -5.8302 0.1760 21 6 -0.0359 -6.9246 -0.9961 22 16 1.5948 -7.0397 -1.6541 23 6 1.1761 -8.4818 -2.4703 24 7 -0.0577 -8.7945 -2.2393 25 6 -0.7455 -8.0006 -1.4559 26 17 -2.4078 -8.2848 -1.0435 27 1 -0.4850 0.8400 -0.0004 28 1 2.9509 -3.3539 -1.0091 29 1 1.3565 -3.6893 -1.7333 30 1 3.1898 -3.7282 1.3511 31 1 2.7537 -5.3593 1.9433 32 1 1.4736 -2.8206 2.5868 33 1 1.0354 -4.4512 3.1791 34 1 -0.7833 -2.5538 -0.1857 35 1 -0.1725 -1.7030 1.2577 36 1 1.8488 -9.0532 -3.0929 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018276756.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:52 Heat of formation + Delta-G solvation = 38.342606 kcal Electronic energy + Delta-G solvation = -24090.579945 eV Core-core repulsion = 20535.354807 eV Total energy + Delta-G solvation = -3555.225138 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.055 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.73632 -40.86109 -39.08903 -37.68119 -35.92440 -33.20418 -32.98537 -32.01736 -31.20007 -28.20043 -27.16529 -25.31307 -24.90815 -23.44902 -21.98768 -21.01259 -20.60558 -19.69575 -18.45485 -17.72839 -17.39619 -16.85031 -16.58456 -16.25351 -15.95595 -15.55200 -15.37280 -15.19698 -14.74597 -14.42741 -14.40926 -13.88840 -13.54455 -13.20460 -13.14535 -12.91292 -12.82636 -12.77818 -12.28112 -12.22716 -12.12312 -12.05757 -11.83660 -11.69619 -11.18348 -11.13694 -10.80361 -10.68076 -10.54047 -10.05987 -9.79228 -8.56588 -7.84831 -5.39809 -1.01274 -0.22310 0.29897 0.99867 1.18572 1.49805 1.52816 1.61584 1.75506 1.93898 2.51767 3.15717 3.34719 3.44997 3.57425 3.69468 3.78678 3.89309 4.05224 4.20857 4.30933 4.53368 4.56181 4.59435 4.82096 4.85197 5.01053 5.08425 5.11560 5.20925 5.40160 5.56780 5.65886 5.70413 6.20491 6.40768 6.49402 6.93691 7.13653 7.78996 8.37852 9.21067 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.021038 B = 0.004082 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.616448 B = 6856.904334 C = 7267.724383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.045 4.045 3 Si 0.965 3.035 4 H -0.257 1.257 5 H -0.300 1.300 6 H -0.296 1.296 7 C -0.252 4.252 8 H 0.082 0.918 9 N -0.601 5.601 10 C 0.136 3.864 11 C 0.112 3.888 12 H 0.111 0.889 13 C -0.103 4.103 14 C -0.105 4.105 15 C 0.111 3.889 16 H 0.081 0.919 17 C 0.187 3.813 18 N -0.604 5.604 19 C 0.598 3.402 20 O -0.559 6.559 21 C -0.312 4.312 22 S 0.292 5.708 23 C 0.038 3.962 24 N -0.499 5.499 25 C 0.171 3.829 26 Cl 0.006 6.994 27 H 0.248 0.752 28 H 0.092 0.908 29 H 0.006 0.994 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.077 0.923 34 H -0.023 1.023 35 H 0.072 0.928 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.568 -16.817 -1.346 19.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.240 4.240 3 Si 0.794 3.206 4 H -0.181 1.181 5 H -0.228 1.228 6 H -0.223 1.223 7 C -0.382 4.382 8 H 0.100 0.900 9 N -0.325 5.325 10 C 0.009 3.991 11 C 0.007 3.993 12 H 0.128 0.872 13 C -0.141 4.141 14 C -0.143 4.143 15 C 0.007 3.993 16 H 0.099 0.901 17 C 0.061 3.939 18 N -0.336 5.336 19 C 0.386 3.614 20 O -0.440 6.440 21 C -0.438 4.438 22 S 0.548 5.452 23 C -0.255 4.255 24 N -0.214 5.214 25 C 0.005 3.995 26 Cl 0.035 6.965 27 H 0.057 0.943 28 H 0.110 0.890 29 H 0.024 0.976 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.090 0.910 33 H 0.096 0.904 34 H -0.005 1.005 35 H 0.090 0.910 36 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 9.415 -16.676 -1.437 19.204 hybrid contribution -1.691 1.076 -0.050 2.005 sum 7.724 -15.601 -1.487 17.471 Atomic orbital electron populations 1.70131 1.07004 1.25623 1.55917 1.26051 0.96052 1.01539 1.00371 0.85229 0.79115 0.80022 0.76218 1.18112 1.22769 1.22296 1.19551 0.91358 0.83391 1.43903 0.90017 1.44432 1.18468 1.09924 1.59672 1.21655 0.98867 0.86579 0.91958 1.23360 0.79385 0.97799 0.98778 0.87219 1.22328 0.97685 1.01629 0.92432 1.22261 0.93323 1.01924 0.96805 1.23078 0.99343 0.86720 0.90201 0.90123 1.21231 0.85958 0.92961 0.93752 1.49106 1.10937 1.29132 1.44445 1.16502 0.84934 0.80183 0.79735 1.90828 1.16302 1.75446 1.61417 1.25588 1.01699 1.03493 1.13050 1.83993 1.04043 1.19934 1.37200 1.29826 0.94084 1.00612 1.00996 1.65792 1.07795 1.31155 1.16668 1.21182 0.90484 0.91346 0.96522 1.98420 1.11261 1.95762 1.91079 0.94284 0.89029 0.97646 0.89378 0.88932 0.90977 0.90426 1.00477 0.90951 0.72433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.16 10.71 21.65 0.23 -53.93 16 2 C -0.04 -2.35 5.32 84.86 0.45 -1.90 16 3 Si 0.97 42.32 29.56 68.60 2.03 44.35 16 4 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 5 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.30 -13.15 7.11 99.48 0.71 -12.44 16 7 C -0.25 -12.37 9.59 84.03 0.81 -11.56 16 8 H 0.08 3.73 7.83 -2.91 -0.02 3.71 16 9 N -0.60 -27.28 2.31 -691.95 -1.60 -28.88 16 10 C 0.14 4.82 6.03 86.55 0.52 5.34 16 11 C 0.11 3.19 3.56 45.47 0.16 3.35 16 12 H 0.11 2.38 3.94 -20.26 -0.08 2.30 16 13 C -0.10 -2.64 6.18 31.55 0.20 -2.44 16 14 C -0.10 -3.26 6.18 31.55 0.20 -3.06 16 15 C 0.11 4.28 4.07 45.49 0.19 4.46 16 16 H 0.08 3.24 7.96 -2.39 -0.02 3.22 16 17 C 0.19 9.01 4.57 86.34 0.39 9.40 16 18 N -0.60 -21.41 2.76 -761.08 -2.10 -23.51 16 19 C 0.60 22.48 7.87 86.40 0.68 23.16 16 20 O -0.56 -24.84 15.54 -4.36 -0.07 -24.91 16 21 C -0.31 -9.39 6.45 24.11 0.16 -9.23 16 22 S 0.29 5.24 18.93 -56.49 -1.07 4.17 16 23 C 0.04 0.57 12.20 130.61 1.59 2.17 16 24 N -0.50 -12.23 10.50 -192.56 -2.02 -14.26 16 25 C 0.17 5.15 7.41 84.48 0.63 5.77 16 26 Cl 0.01 0.20 27.42 -2.72 -0.07 0.13 16 27 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 28 H 0.09 2.82 7.97 -2.39 -0.02 2.80 16 29 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.09 2.31 7.84 -2.39 -0.02 2.29 16 31 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.07 2.52 7.83 -2.38 -0.02 2.50 16 33 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 34 H -0.02 -1.30 8.14 -2.39 -0.02 -1.32 16 35 H 0.07 3.88 6.37 -2.39 -0.02 3.87 16 36 H 0.26 1.04 8.06 -2.91 -0.02 1.02 16 Total: -1.00 -71.06 317.13 2.35 -68.71 By element: Atomic # 1 Polarization: 1.61 SS G_CDS: 1.06 Total: 2.66 kcal Atomic # 6 Polarization: 19.49 SS G_CDS: 5.97 Total: 25.46 kcal Atomic # 7 Polarization: -115.09 SS G_CDS: -5.48 Total: -120.57 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -0.07 Total: -24.91 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Atomic # 16 Polarization: 5.24 SS G_CDS: -1.07 Total: 4.17 kcal Atomic # 17 Polarization: 0.20 SS G_CDS: -0.07 Total: 0.13 kcal Total: -71.06 2.35 -68.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018276756.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.053 kcal (2) G-P(sol) polarization free energy of solvation -71.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds