Wall clock time and date at job start Tue Mar 31 2020 15:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30940 * 122.89672 * 2 1 4 4 C 1.29587 * 117.32452 * 179.97438 * 3 2 1 5 5 Cl 1.73599 * 124.80943 * 179.97438 * 4 3 2 6 6 S 1.70953 * 110.37871 * 359.73980 * 4 3 2 7 7 C 1.35662 * 122.89444 * 179.97438 * 2 1 3 8 8 C 1.46588 * 126.11972 * 0.02562 * 7 2 1 9 9 O 1.21703 * 119.99931 * 359.97438 * 8 7 2 10 10 N 1.34777 * 119.99989 * 179.72325 * 8 7 2 11 11 C 1.47865 * 126.94462 * 359.95153 * 10 8 7 12 12 C 1.55960 * 105.13183 * 180.63541 * 11 10 8 13 13 H 1.09006 * 116.55154 * 160.09947 * 12 11 10 14 14 C 1.58971 * 98.68750 * 34.64604 * 12 11 10 15 15 C 1.49291 * 126.94421 * 180.27720 * 10 8 7 16 16 H 1.09001 * 116.15002 * 16.67331 * 15 10 8 17 17 C 1.56018 * 104.08854 * 247.53397 * 15 10 8 18 18 N 1.47876 * 105.10402 * 288.76338 * 17 15 10 19 19 C 1.36941 * 126.94389 * 182.02176 * 18 17 15 20 20 H 1.07996 * 119.99497 * 179.97438 * 19 18 17 21 21 C 1.38805 * 119.99806 * 359.97438 * 19 18 17 22 22 N 1.31618 * 120.00670 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99734 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46976 * 90.00023 * 23 21 19 25 25 H 1.48497 * 109.47368 * 210.00081 * 23 21 19 26 26 H 1.48503 * 109.46902 * 330.00043 * 23 21 19 27 27 H 1.08998 * 109.47230 * 270.04654 * 1 2 3 28 28 H 1.09006 * 109.46786 * 30.04402 * 1 2 3 29 29 H 1.08997 * 109.47205 * 150.04306 * 1 2 3 30 30 H 1.09007 * 110.31969 * 300.94004 * 11 10 8 31 31 H 1.09002 * 110.31217 * 63.11955 * 11 10 8 32 32 H 1.08998 * 112.08207 * 190.73795 * 14 12 11 33 33 H 1.09000 * 113.30618 * 62.74986 * 14 12 11 34 34 H 1.09002 * 110.31878 * 47.67188 * 17 15 10 35 35 H 1.08998 * 110.31538 * 169.76147 * 17 15 10 36 36 H 0.96997 * 120.00095 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2182 1.0994 0.0000 4 6 3.5080 0.9736 0.0005 5 17 4.6327 2.2960 0.0000 6 16 3.9448 -0.6791 0.0084 7 6 2.2438 -1.1391 0.0005 8 6 1.7188 -2.5078 0.0006 9 8 0.5168 -2.6984 0.0007 10 7 2.5673 -3.5550 -0.0045 11 6 4.0449 -3.5015 -0.0115 12 6 4.5061 -4.9913 -0.0319 13 1 5.5243 -5.1816 -0.3715 14 6 3.3374 -5.5922 -0.9266 15 6 2.2050 -5.0032 -0.0110 16 1 1.1791 -5.2406 -0.2924 17 6 2.6744 -5.5184 1.3849 18 7 4.1516 -5.5251 1.3164 19 6 5.0189 -5.9378 2.2924 20 1 6.0844 -5.8942 2.1216 21 6 4.5285 -6.4121 3.5013 22 7 3.2300 -6.4648 3.7097 23 14 5.7117 -6.9758 4.8324 24 1 6.0564 -5.8266 5.7074 25 1 5.0718 -8.0417 5.6445 26 1 6.9475 -7.5073 4.2035 27 1 -0.3633 0.0008 1.0276 28 1 -0.3633 0.8897 -0.5146 29 1 -0.3633 -0.8903 -0.5131 30 1 4.4000 -2.9618 -0.8895 31 1 4.4108 -3.0269 0.8990 32 1 3.3431 -6.6821 -0.9300 33 1 3.3113 -5.1803 -1.9354 34 1 2.3351 -4.8438 2.1710 35 1 2.2978 -6.5256 1.5628 36 1 2.8875 -6.7966 4.5543 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032424901.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:01 Heat of formation + Delta-G solvation = 69.969990 kcal Electronic energy + Delta-G solvation = -23548.066666 eV Core-core repulsion = 19994.212994 eV Total energy + Delta-G solvation = -3553.853672 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.055 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.49134 -39.82885 -37.80496 -37.12085 -33.81536 -31.98646 -31.55821 -29.45560 -28.79965 -27.92081 -25.38169 -24.96593 -23.73179 -22.05959 -20.14626 -19.71426 -18.68214 -18.44147 -17.14098 -16.33927 -16.27175 -15.83605 -15.35204 -14.83200 -14.48549 -14.02847 -13.86467 -13.51196 -13.40037 -12.91647 -12.74519 -12.21357 -12.07399 -11.87365 -11.79179 -11.70068 -11.47823 -11.41381 -11.13707 -10.96634 -10.93825 -10.70512 -10.41965 -10.17082 -9.99283 -9.76120 -9.63061 -9.60816 -8.90808 -8.80292 -8.17464 -7.05361 -5.86658 -3.22017 0.02913 0.53898 1.35730 1.64666 2.27375 3.10797 3.28526 3.32014 3.36873 3.39637 4.25393 4.33026 4.58974 4.89985 4.99222 5.02528 5.22009 5.42280 5.46806 5.56734 5.62858 5.67956 5.69129 5.80242 5.94182 6.10817 6.25078 6.27991 6.30370 6.44389 6.52553 7.28933 7.31969 7.36591 7.62055 7.81460 7.99018 8.28994 8.99739 9.60740 10.27918 11.25332 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.014565 B = 0.004110 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.925433 B = 6811.679729 C = 7649.940113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.148 3.852 3 N -0.469 5.469 4 C 0.053 3.947 5 Cl 0.024 6.976 6 S 0.264 5.736 7 C -0.281 4.281 8 C 0.607 3.393 9 O -0.532 6.532 10 N -0.599 5.599 11 C 0.065 3.935 12 C 0.150 3.850 13 H 0.111 0.889 14 C -0.154 4.154 15 C 0.102 3.898 16 H 0.117 0.883 17 C 0.172 3.828 18 N -0.593 5.593 19 C -0.237 4.237 20 H 0.083 0.917 21 C -0.002 4.002 22 N -0.917 5.917 23 Si 0.913 3.087 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.280 1.280 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.103 0.897 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.049 0.951 35 H 0.060 0.940 36 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.563 10.980 -10.629 15.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.010 3.990 3 N -0.187 5.187 4 C -0.246 4.246 5 Cl 0.051 6.949 6 S 0.518 5.482 7 C -0.405 4.405 8 C 0.395 3.605 9 O -0.413 6.413 10 N -0.332 5.332 11 C -0.062 4.062 12 C 0.040 3.960 13 H 0.129 0.871 14 C -0.194 4.194 15 C 0.000 4.000 16 H 0.135 0.865 17 C 0.047 3.953 18 N -0.316 5.316 19 C -0.364 4.364 20 H 0.100 0.900 21 C -0.200 4.200 22 N -0.563 5.563 23 Si 0.743 3.257 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.205 1.205 27 H 0.101 0.899 28 H 0.092 0.908 29 H 0.122 0.878 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.790 11.007 -10.310 15.187 hybrid contribution -0.074 0.281 0.951 0.995 sum 1.716 11.288 -9.359 14.763 Atomic orbital electron populations 1.20672 0.85376 1.04498 1.03983 1.20396 0.98515 0.84105 0.95939 1.65767 1.03667 1.32545 1.16716 1.27780 0.93364 0.96402 1.07069 1.98425 1.54731 1.45259 1.96440 1.84589 1.04739 0.94621 1.64218 1.25786 0.95916 0.99738 1.19109 1.16126 0.85508 0.81427 0.77486 1.90765 1.13679 1.84448 1.52370 1.49089 1.07055 1.06586 1.70431 1.23559 0.79706 1.02446 1.00536 1.23370 0.96767 0.88276 0.87545 0.87102 1.24522 0.96851 1.01183 0.96867 1.24433 0.98895 0.77153 0.99496 0.86505 1.21974 0.83448 0.99947 0.89899 1.45213 1.01946 1.73557 1.10883 1.19044 0.88538 1.36368 0.92490 0.89964 1.24830 0.96099 1.01074 0.97948 1.69902 1.10525 1.51153 1.24748 0.86109 0.79714 0.78118 0.81715 1.21527 1.21591 1.20516 0.89921 0.90807 0.87824 0.92013 0.90507 0.89455 0.91224 0.93265 0.92175 0.93421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.15 9.69 36.01 0.35 -0.80 16 2 C 0.15 2.26 6.79 -83.89 -0.57 1.69 16 3 N -0.47 -7.02 10.51 -8.63 -0.09 -7.11 16 4 C 0.05 0.72 8.03 51.82 0.42 1.13 16 5 Cl 0.02 0.26 29.33 -51.86 -1.52 -1.26 16 6 S 0.26 3.44 18.93 -107.50 -2.04 1.41 16 7 C -0.28 -4.44 6.40 -37.14 -0.24 -4.68 16 8 C 0.61 10.94 7.85 -12.89 -0.10 10.84 16 9 O -0.53 -10.53 14.61 5.19 0.08 -10.45 16 10 N -0.60 -10.56 2.94 -158.37 -0.47 -11.03 16 11 C 0.06 1.03 4.60 -1.71 -0.01 1.02 16 12 C 0.15 2.57 5.55 -61.48 -0.34 2.23 16 13 H 0.11 1.66 8.14 -51.93 -0.42 1.24 16 14 C -0.15 -2.39 6.93 -21.20 -0.15 -2.53 16 15 C 0.10 1.84 5.18 -62.55 -0.32 1.52 16 16 H 0.12 2.02 8.06 -51.93 -0.42 1.60 16 17 C 0.17 3.92 4.79 -1.67 -0.01 3.91 16 18 N -0.59 -13.45 3.06 -155.18 -0.48 -13.92 16 19 C -0.24 -6.00 10.37 -15.06 -0.16 -6.15 16 20 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 21 C 0.00 -0.06 5.49 -17.43 -0.10 -0.16 16 22 N -0.92 -25.82 10.56 55.49 0.59 -25.23 16 23 Si 0.91 21.00 29.55 -169.99 -5.02 15.98 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 27 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.10 1.48 6.00 -51.93 -0.31 1.17 16 30 H 0.06 0.80 6.97 -51.93 -0.36 0.44 16 31 H 0.08 1.34 7.21 -51.93 -0.37 0.97 16 32 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.05 1.31 7.68 -51.93 -0.40 0.91 16 35 H 0.06 1.51 7.46 -51.93 -0.39 1.12 16 36 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 322.74 15.07 4.86 4.86 Total: -1.00 -29.77 322.74 -9.22 -38.99 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -3.91 Total: -0.24 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: -1.22 Total: 8.01 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: -0.45 Total: -57.30 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.08 Total: -10.45 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 3.44 SS G_CDS: -2.04 Total: 1.41 kcal Atomic # 17 Polarization: 0.26 SS G_CDS: -1.52 Total: -1.26 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.77 -9.22 -38.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032424901.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.957 kcal (2) G-P(sol) polarization free energy of solvation -29.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds