Wall clock time and date at job start Tue Mar 31 2020 15:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30940 * 122.89672 * 2 1 4 4 C 1.29587 * 117.32452 * 179.97438 * 3 2 1 5 5 Cl 1.73599 * 124.80943 * 179.97438 * 4 3 2 6 6 S 1.70953 * 110.37871 * 359.73980 * 4 3 2 7 7 C 1.35662 * 122.89444 * 179.97438 * 2 1 3 8 8 C 1.46588 * 126.11972 * 0.02562 * 7 2 1 9 9 O 1.21703 * 119.99931 * 359.97438 * 8 7 2 10 10 N 1.34777 * 119.99989 * 179.72325 * 8 7 2 11 11 C 1.47865 * 126.94462 * 359.95153 * 10 8 7 12 12 C 1.55960 * 105.13183 * 180.63541 * 11 10 8 13 13 H 1.09006 * 116.55154 * 160.09947 * 12 11 10 14 14 C 1.58971 * 98.68750 * 34.64604 * 12 11 10 15 15 C 1.49291 * 126.94421 * 180.27720 * 10 8 7 16 16 H 1.09001 * 116.15002 * 16.67331 * 15 10 8 17 17 C 1.56018 * 104.08854 * 247.53397 * 15 10 8 18 18 N 1.47876 * 105.10402 * 288.76338 * 17 15 10 19 19 C 1.36941 * 126.94389 * 182.02176 * 18 17 15 20 20 H 1.07996 * 119.99497 * 179.97438 * 19 18 17 21 21 C 1.38805 * 119.99806 * 359.97438 * 19 18 17 22 22 N 1.31618 * 120.00670 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99734 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46976 * 90.00023 * 23 21 19 25 25 H 1.48497 * 109.47368 * 210.00081 * 23 21 19 26 26 H 1.48503 * 109.46902 * 330.00043 * 23 21 19 27 27 H 1.08998 * 109.47230 * 270.04654 * 1 2 3 28 28 H 1.09006 * 109.46786 * 30.04402 * 1 2 3 29 29 H 1.08997 * 109.47205 * 150.04306 * 1 2 3 30 30 H 1.09007 * 110.31969 * 300.94004 * 11 10 8 31 31 H 1.09002 * 110.31217 * 63.11955 * 11 10 8 32 32 H 1.08998 * 112.08207 * 190.73795 * 14 12 11 33 33 H 1.09000 * 113.30618 * 62.74986 * 14 12 11 34 34 H 1.09002 * 110.31878 * 47.67188 * 17 15 10 35 35 H 1.08998 * 110.31538 * 169.76147 * 17 15 10 36 36 H 0.96997 * 120.00095 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2182 1.0994 0.0000 4 6 3.5080 0.9736 0.0005 5 17 4.6327 2.2960 0.0000 6 16 3.9448 -0.6791 0.0084 7 6 2.2438 -1.1391 0.0005 8 6 1.7188 -2.5078 0.0006 9 8 0.5168 -2.6984 0.0007 10 7 2.5673 -3.5550 -0.0045 11 6 4.0449 -3.5015 -0.0115 12 6 4.5061 -4.9913 -0.0319 13 1 5.5243 -5.1816 -0.3715 14 6 3.3374 -5.5922 -0.9266 15 6 2.2050 -5.0032 -0.0110 16 1 1.1791 -5.2406 -0.2924 17 6 2.6744 -5.5184 1.3849 18 7 4.1516 -5.5251 1.3164 19 6 5.0189 -5.9378 2.2924 20 1 6.0844 -5.8942 2.1216 21 6 4.5285 -6.4121 3.5013 22 7 3.2300 -6.4648 3.7097 23 14 5.7117 -6.9758 4.8324 24 1 6.0564 -5.8266 5.7074 25 1 5.0718 -8.0417 5.6445 26 1 6.9475 -7.5073 4.2035 27 1 -0.3633 0.0008 1.0276 28 1 -0.3633 0.8897 -0.5146 29 1 -0.3633 -0.8903 -0.5131 30 1 4.4000 -2.9618 -0.8895 31 1 4.4108 -3.0269 0.8990 32 1 3.3431 -6.6821 -0.9300 33 1 3.3113 -5.1803 -1.9354 34 1 2.3351 -4.8438 2.1710 35 1 2.2978 -6.5256 1.5628 36 1 2.8875 -6.7966 4.5543 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032424901.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:01 Heat of formation + Delta-G solvation = 51.467885 kcal Electronic energy + Delta-G solvation = -23548.868978 eV Core-core repulsion = 19994.212994 eV Total energy + Delta-G solvation = -3554.655984 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.055 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.80942 -41.10041 -39.21006 -38.12789 -35.54182 -33.52742 -32.82452 -31.00927 -30.34877 -29.16723 -27.02700 -26.12065 -25.29866 -23.45933 -21.57765 -21.16826 -19.91008 -19.79278 -18.68823 -17.76414 -17.65871 -17.13929 -16.76585 -16.19270 -15.98979 -15.67780 -15.04953 -14.93213 -14.81176 -14.06382 -14.02011 -13.69306 -13.47853 -13.38004 -13.14476 -12.86876 -12.78143 -12.72989 -12.68361 -12.53435 -12.37435 -12.16483 -12.05446 -11.91415 -11.56595 -11.24764 -10.88993 -10.75267 -10.73339 -10.06190 -9.56466 -8.93034 -7.84820 -5.20690 -1.11002 -0.52747 0.23453 0.59831 1.09916 1.48998 1.49305 1.58145 1.75099 1.96699 2.48697 3.15057 3.27030 3.34442 3.47855 3.71552 3.79819 3.85677 3.99356 4.17491 4.38916 4.44529 4.56987 4.65792 4.73158 4.75642 4.83297 5.01443 5.10663 5.20727 5.23682 5.45221 5.50103 5.66845 6.09309 6.17926 6.44752 6.90725 7.02893 7.70774 8.39948 9.26336 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.014565 B = 0.004110 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.925433 B = 6811.679729 C = 7649.940113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.149 3.851 3 N -0.486 5.486 4 C 0.054 3.946 5 Cl 0.049 6.951 6 S 0.312 5.688 7 C -0.314 4.314 8 C 0.604 3.396 9 O -0.560 6.560 10 N -0.604 5.604 11 C 0.070 3.930 12 C 0.145 3.855 13 H 0.143 0.857 14 C -0.130 4.130 15 C 0.106 3.894 16 H 0.121 0.879 17 C 0.185 3.815 18 N -0.613 5.613 19 C -0.230 4.230 20 H 0.099 0.901 21 C -0.067 4.067 22 N -0.956 5.956 23 Si 0.974 3.026 24 H -0.292 1.292 25 H -0.303 1.303 26 H -0.260 1.260 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.107 0.893 34 H -0.003 1.003 35 H 0.024 0.976 36 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.831 12.307 -12.737 18.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.010 3.990 3 N -0.204 5.204 4 C -0.245 4.245 5 Cl 0.076 6.924 6 S 0.567 5.433 7 C -0.438 4.438 8 C 0.393 3.607 9 O -0.442 6.442 10 N -0.336 5.336 11 C -0.056 4.056 12 C 0.037 3.963 13 H 0.161 0.839 14 C -0.170 4.170 15 C 0.004 3.996 16 H 0.139 0.861 17 C 0.059 3.941 18 N -0.337 5.337 19 C -0.359 4.359 20 H 0.116 0.884 21 C -0.260 4.260 22 N -0.605 5.605 23 Si 0.803 3.197 24 H -0.219 1.219 25 H -0.230 1.230 26 H -0.185 1.185 27 H 0.101 0.899 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.121 0.879 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.126 0.874 34 H 0.016 0.984 35 H 0.042 0.958 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 4.121 12.355 -12.473 18.033 hybrid contribution -0.717 -0.003 1.566 1.722 sum 3.404 12.352 -10.907 16.826 Atomic orbital electron populations 1.20666 0.84717 1.04847 1.04089 1.20641 0.99263 0.84133 0.94918 1.65852 1.04295 1.32386 1.17880 1.28063 0.93449 0.97523 1.05494 1.98440 1.53612 1.44154 1.96168 1.84259 1.02141 0.93719 1.63205 1.25624 0.98064 0.98693 1.21415 1.16403 0.85256 0.82263 0.76811 1.90743 1.14850 1.85109 1.53467 1.49132 1.07862 1.06173 1.70467 1.23477 0.78630 1.01858 1.01608 1.23797 0.99017 0.88538 0.84911 0.83934 1.24445 0.93704 1.01145 0.97675 1.24278 1.00199 0.77957 0.97199 0.86104 1.21563 0.84190 0.96884 0.91466 1.45442 1.01573 1.73816 1.12840 1.19535 0.89679 1.33909 0.92740 0.88360 1.25619 0.97277 1.02669 1.00447 1.70140 1.12397 1.53385 1.24558 0.85142 0.78444 0.76999 0.79136 1.21946 1.22982 1.18477 0.89867 0.88850 0.88980 0.87948 0.92119 0.89489 0.87443 0.98450 0.95811 0.94705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.21 9.69 71.24 0.69 -1.52 16 2 C 0.15 4.39 6.79 42.10 0.29 4.67 16 3 N -0.49 -13.67 10.51 -181.21 -1.90 -15.57 16 4 C 0.05 1.31 8.03 130.57 1.05 2.36 16 5 Cl 0.05 0.94 29.33 -2.72 -0.08 0.86 16 6 S 0.31 7.35 18.93 -56.49 -1.07 6.28 16 7 C -0.31 -9.56 6.40 23.85 0.15 -9.41 16 8 C 0.60 21.55 7.85 86.42 0.68 22.23 16 9 O -0.56 -22.48 14.61 -4.36 -0.06 -22.55 16 10 N -0.60 -20.71 2.94 -773.17 -2.27 -22.98 16 11 C 0.07 2.05 4.60 87.14 0.40 2.45 16 12 C 0.14 4.54 5.55 47.63 0.26 4.80 16 13 H 0.14 3.60 8.14 -2.38 -0.02 3.58 16 14 C -0.13 -3.65 6.93 34.18 0.24 -3.41 16 15 C 0.11 3.80 5.18 46.93 0.24 4.05 16 16 H 0.12 4.21 8.06 -2.39 -0.02 4.19 16 17 C 0.19 8.76 4.79 87.16 0.42 9.17 16 18 N -0.61 -27.67 3.06 -644.86 -1.98 -29.65 16 19 C -0.23 -11.58 10.37 84.03 0.87 -10.71 16 20 H 0.10 4.52 7.83 -2.91 -0.02 4.50 16 21 C -0.07 -3.64 5.49 84.86 0.47 -3.18 16 22 N -0.96 -56.57 10.56 21.65 0.23 -56.34 16 23 Si 0.97 43.84 29.55 68.60 2.03 45.87 16 24 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 25 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 26 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 27 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 29 H 0.09 2.65 6.00 -2.39 -0.01 2.64 16 30 H 0.10 2.20 6.97 -2.38 -0.02 2.18 16 31 H 0.06 2.01 7.21 -2.39 -0.02 1.99 16 32 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.00 -0.15 7.68 -2.39 -0.02 -0.17 16 35 H 0.02 1.27 7.46 -2.39 -0.02 1.25 16 36 H 0.24 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -67.67 322.74 1.78 -65.89 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: 1.13 Total: 6.68 kcal Atomic # 6 Polarization: 15.75 SS G_CDS: 5.76 Total: 21.50 kcal Atomic # 7 Polarization: -118.62 SS G_CDS: -5.92 Total: -124.54 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.06 Total: -22.55 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: 7.35 SS G_CDS: -1.07 Total: 6.28 kcal Atomic # 17 Polarization: 0.94 SS G_CDS: -0.08 Total: 0.86 kcal Total: -67.67 1.78 -65.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032424901.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.357 kcal (2) G-P(sol) polarization free energy of solvation -67.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds