Wall clock time and date at job start Tue Mar 31 2020 15:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 S 1.70931 * 125.57416 * 2 1 4 4 C 1.70760 * 91.15071 * 180.16634 * 3 2 1 5 5 Cl 1.73605 * 124.72723 * 179.82811 * 4 3 2 6 6 N 1.28768 * 110.55052 * 359.83429 * 4 3 2 7 7 C 1.33656 * 115.71571 * 359.97438 * 6 4 3 8 8 C 1.47241 * 123.14164 * 179.97438 * 7 6 4 9 9 O 1.21630 * 120.00211 * 180.02562 * 8 7 6 10 10 N 1.34775 * 119.99745 * 0.02562 * 8 7 6 11 11 C 1.47873 * 126.94763 * 359.97438 * 10 8 7 12 12 C 1.58432 * 104.83272 * 182.30266 * 11 10 8 13 13 H 1.08997 * 116.62182 * 159.51623 * 12 11 10 14 14 C 1.57437 * 99.61966 * 32.32875 * 12 11 10 15 15 C 1.49292 * 126.94377 * 180.02562 * 10 8 7 16 16 H 1.09001 * 116.15446 * 15.84247 * 15 10 8 17 17 C 1.56021 * 104.09432 * 246.69698 * 15 10 8 18 18 N 1.47864 * 105.10416 * 287.92273 * 17 15 10 19 19 C 1.36938 * 126.94685 * 181.97612 * 18 17 15 20 20 H 1.07999 * 120.00325 * 180.02562 * 19 18 17 21 21 C 1.38815 * 119.99817 * 0.02779 * 19 18 17 22 22 N 1.31621 * 119.99673 * 359.71804 * 21 19 18 23 23 Si 1.86795 * 120.00115 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47071 * 359.97438 * 23 21 19 25 25 H 1.48506 * 109.47211 * 119.99797 * 23 21 19 26 26 H 1.48493 * 109.47327 * 239.99664 * 23 21 19 27 27 H 1.09004 * 109.47571 * 270.13544 * 1 2 3 28 28 H 1.09005 * 109.46641 * 30.13456 * 1 2 3 29 29 H 1.08993 * 109.47632 * 150.13111 * 1 2 3 30 30 H 1.08995 * 110.31256 * 300.90921 * 11 10 8 31 31 H 1.08997 * 110.31019 * 62.99270 * 11 10 8 32 32 H 1.09001 * 112.52781 * 192.40379 * 14 12 11 33 33 H 1.09000 * 112.31808 * 64.86881 * 14 12 11 34 34 H 1.08995 * 110.31611 * 169.01169 * 17 15 10 35 35 H 1.09002 * 110.30947 * 46.82382 * 17 15 10 36 36 H 0.97000 * 120.00043 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 16 2.5013 1.3903 0.0000 4 6 3.9099 0.4250 -0.0050 5 17 5.5323 1.0429 -0.0120 6 7 3.6012 -0.8251 -0.0029 7 6 2.2931 -1.0994 0.0031 8 6 1.7583 -2.4713 0.0057 9 8 0.5560 -2.6553 0.0107 10 7 2.6010 -3.5230 0.0026 11 6 4.0790 -3.4777 -0.0040 12 6 4.5310 -4.9949 -0.0667 13 1 5.5433 -5.1887 -0.4213 14 6 3.3443 -5.5882 -0.9142 15 6 2.2309 -4.9694 0.0040 16 1 1.1990 -5.2015 -0.2592 17 6 2.7219 -5.4858 1.3920 18 7 4.1967 -5.5203 1.2906 19 6 5.0780 -5.9431 2.2496 20 1 6.1401 -5.9196 2.0551 21 6 4.6062 -6.4020 3.4718 22 7 3.3121 -6.4255 3.7109 23 14 5.8083 -6.9795 4.7798 24 1 7.1964 -6.8485 4.2688 25 1 5.6491 -6.1483 6.0001 26 1 5.5351 -8.4012 5.1102 27 1 -0.3634 0.0024 1.0277 28 1 -0.3633 0.8888 -0.5160 29 1 -0.3634 -0.8911 -0.5117 30 1 4.4372 -2.9418 -0.8829 31 1 4.4470 -3.0016 0.9048 32 1 3.3299 -6.6781 -0.9068 33 1 3.3171 -5.1858 -1.9268 34 1 2.3322 -6.4856 1.5833 35 1 2.4128 -4.8007 2.1815 36 1 2.9825 -6.7459 4.5651 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032513506.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:38 Heat of formation + Delta-G solvation = 71.501986 kcal Electronic energy + Delta-G solvation = -23682.512811 eV Core-core repulsion = 20128.725571 eV Total energy + Delta-G solvation = -3553.787240 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.055 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -40.66152 -39.32737 -37.64081 -37.00164 -33.66644 -32.62991 -31.55838 -29.16425 -28.43109 -27.51016 -25.15303 -24.68197 -23.74235 -22.17413 -20.09077 -19.68060 -18.88034 -18.25433 -16.90301 -16.28340 -15.90381 -15.80865 -15.46945 -14.79154 -14.28753 -13.94377 -13.63905 -13.39556 -13.28927 -13.08790 -12.84963 -12.05361 -11.92007 -11.83289 -11.77411 -11.62620 -11.57898 -11.26745 -10.99912 -10.83944 -10.74104 -10.56868 -10.26794 -10.04450 -9.92977 -9.68366 -9.59305 -9.52138 -8.97026 -8.67551 -7.96196 -6.87532 -5.74022 -3.07528 0.25352 0.48834 1.26189 1.65905 1.89598 3.36894 3.39156 3.44325 3.47083 3.54530 4.27044 4.45289 4.69185 4.81252 5.08612 5.20918 5.39142 5.44606 5.48079 5.60394 5.63648 5.69004 5.78681 6.08754 6.16978 6.28383 6.37110 6.45630 6.58172 6.66208 6.81228 7.12172 7.44770 7.50993 7.74256 8.04525 8.13216 8.47541 9.13546 9.74379 10.43871 11.38507 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.013840 B = 0.004236 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.668899 B = 6607.647761 C = 7471.801509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.182 4.182 3 S 0.251 5.749 4 C 0.042 3.958 5 Cl 0.027 6.973 6 N -0.412 5.412 7 C 0.022 3.978 8 C 0.603 3.397 9 O -0.546 6.546 10 N -0.585 5.585 11 C 0.099 3.901 12 C 0.137 3.863 13 H 0.107 0.893 14 C -0.150 4.150 15 C 0.098 3.902 16 H 0.114 0.886 17 C 0.175 3.825 18 N -0.597 5.597 19 C -0.227 4.227 20 H 0.081 0.919 21 C -0.007 4.007 22 N -0.921 5.921 23 Si 0.912 3.088 24 H -0.279 1.279 25 H -0.291 1.291 26 H -0.291 1.291 27 H 0.085 0.915 28 H 0.069 0.931 29 H 0.111 0.889 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.046 0.954 36 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.737 16.027 -10.853 19.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.307 4.307 3 S 0.503 5.497 4 C -0.263 4.263 5 Cl 0.055 6.945 6 N -0.129 5.129 7 C -0.112 4.112 8 C 0.389 3.611 9 O -0.426 6.426 10 N -0.315 5.315 11 C -0.026 4.026 12 C 0.028 3.972 13 H 0.125 0.875 14 C -0.189 4.189 15 C -0.004 4.004 16 H 0.132 0.868 17 C 0.050 3.950 18 N -0.321 5.321 19 C -0.355 4.355 20 H 0.099 0.901 21 C -0.204 4.204 22 N -0.568 5.568 23 Si 0.742 3.258 24 H -0.204 1.204 25 H -0.218 1.218 26 H -0.218 1.218 27 H 0.104 0.896 28 H 0.088 0.912 29 H 0.129 0.871 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.930 16.572 -10.560 19.745 hybrid contribution 0.738 -1.011 0.957 1.576 sum -1.192 15.561 -9.603 18.324 Atomic orbital electron populations 1.20579 0.84987 1.04717 1.04162 1.25722 1.03895 0.95662 1.05375 1.82771 0.93626 1.07635 1.65652 1.26969 0.94676 0.93450 1.11206 1.98431 1.15381 1.83888 1.96801 1.66892 1.17128 1.16461 1.12455 1.20211 0.86150 0.96133 1.08669 1.16468 0.85181 0.81682 0.77783 1.90719 1.13795 1.84673 1.53443 1.48979 1.08143 1.05800 1.68587 1.23745 0.78051 0.99558 1.01215 1.23807 0.96360 0.89790 0.87206 0.87528 1.24169 0.97082 1.00767 0.96907 1.24386 0.98617 0.77803 0.99621 0.86784 1.21917 0.83546 0.99578 0.89926 1.45260 1.01990 1.74080 1.10802 1.19108 0.88501 1.35389 0.92542 0.90099 1.24808 0.96107 1.01619 0.97837 1.69923 1.11047 1.52186 1.23626 0.86047 0.79928 0.78045 0.81750 1.20448 1.21847 1.21754 0.89633 0.91218 0.87107 0.92383 0.90638 0.89578 0.91688 0.92474 0.93537 0.93697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.96 9.64 36.00 0.35 -0.61 16 2 C -0.18 -2.41 6.40 -35.41 -0.23 -2.64 16 3 S 0.25 2.55 22.93 -107.50 -2.47 0.08 16 4 C 0.04 0.55 7.98 51.48 0.41 0.96 16 5 Cl 0.03 0.31 29.33 -51.86 -1.52 -1.21 16 6 N -0.41 -6.67 7.91 -9.45 -0.07 -6.75 16 7 C 0.02 0.37 6.63 -84.51 -0.56 -0.19 16 8 C 0.60 11.68 7.87 -12.60 -0.10 11.58 16 9 O -0.55 -11.12 14.44 5.25 0.08 -11.04 16 10 N -0.58 -11.55 2.95 -156.55 -0.46 -12.02 16 11 C 0.10 1.91 5.00 -0.29 0.00 1.90 16 12 C 0.14 2.69 5.63 -60.94 -0.34 2.35 16 13 H 0.11 1.89 8.14 -51.93 -0.42 1.46 16 14 C -0.15 -2.62 6.85 -22.13 -0.15 -2.77 16 15 C 0.10 1.94 5.19 -62.58 -0.32 1.62 16 16 H 0.11 2.14 8.05 -51.93 -0.42 1.72 16 17 C 0.18 4.29 4.75 -1.68 -0.01 4.29 16 18 N -0.60 -14.77 3.02 -154.60 -0.47 -15.23 16 19 C -0.23 -6.19 10.38 -15.06 -0.16 -6.34 16 20 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 21 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 22 N -0.92 -27.22 10.56 55.49 0.59 -26.63 16 23 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.11 1.47 6.00 -51.93 -0.31 1.16 16 30 H 0.06 1.01 7.60 -51.93 -0.39 0.62 16 31 H 0.08 1.65 7.80 -51.93 -0.41 1.25 16 32 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.06 1.52 7.47 -51.93 -0.39 1.13 16 35 H 0.05 1.32 7.67 -51.93 -0.40 0.92 16 36 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 325.25 15.07 4.90 4.90 Total: -1.00 -31.72 325.25 -9.63 -41.36 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -3.97 Total: -0.38 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: -1.21 Total: 9.85 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: -0.42 Total: -60.63 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.08 Total: -11.04 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Atomic # 16 Polarization: 2.55 SS G_CDS: -2.47 Total: 0.08 kcal Atomic # 17 Polarization: 0.31 SS G_CDS: -1.52 Total: -1.21 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.72 -9.63 -41.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032513506.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.859 kcal (2) G-P(sol) polarization free energy of solvation -31.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds