Wall clock time and date at job start Tue Mar 31 2020 15:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 S 1.70931 * 125.57416 * 2 1 4 4 C 1.70760 * 91.15071 * 180.16634 * 3 2 1 5 5 Cl 1.73605 * 124.72723 * 179.82811 * 4 3 2 6 6 N 1.28768 * 110.55052 * 359.83429 * 4 3 2 7 7 C 1.33656 * 115.71571 * 359.97438 * 6 4 3 8 8 C 1.47241 * 123.14164 * 179.97438 * 7 6 4 9 9 O 1.21630 * 120.00211 * 180.02562 * 8 7 6 10 10 N 1.34775 * 119.99745 * 0.02562 * 8 7 6 11 11 C 1.47873 * 126.94763 * 359.97438 * 10 8 7 12 12 C 1.58432 * 104.83272 * 182.30266 * 11 10 8 13 13 H 1.08997 * 116.62182 * 159.51623 * 12 11 10 14 14 C 1.57437 * 99.61966 * 32.32875 * 12 11 10 15 15 C 1.49292 * 126.94377 * 180.02562 * 10 8 7 16 16 H 1.09001 * 116.15446 * 15.84247 * 15 10 8 17 17 C 1.56021 * 104.09432 * 246.69698 * 15 10 8 18 18 N 1.47864 * 105.10416 * 287.92273 * 17 15 10 19 19 C 1.36938 * 126.94685 * 181.97612 * 18 17 15 20 20 H 1.07999 * 120.00325 * 180.02562 * 19 18 17 21 21 C 1.38815 * 119.99817 * 0.02779 * 19 18 17 22 22 N 1.31621 * 119.99673 * 359.71804 * 21 19 18 23 23 Si 1.86795 * 120.00115 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47071 * 359.97438 * 23 21 19 25 25 H 1.48506 * 109.47211 * 119.99797 * 23 21 19 26 26 H 1.48493 * 109.47327 * 239.99664 * 23 21 19 27 27 H 1.09004 * 109.47571 * 270.13544 * 1 2 3 28 28 H 1.09005 * 109.46641 * 30.13456 * 1 2 3 29 29 H 1.08993 * 109.47632 * 150.13111 * 1 2 3 30 30 H 1.08995 * 110.31256 * 300.90921 * 11 10 8 31 31 H 1.08997 * 110.31019 * 62.99270 * 11 10 8 32 32 H 1.09001 * 112.52781 * 192.40379 * 14 12 11 33 33 H 1.09000 * 112.31808 * 64.86881 * 14 12 11 34 34 H 1.08995 * 110.31611 * 169.01169 * 17 15 10 35 35 H 1.09002 * 110.30947 * 46.82382 * 17 15 10 36 36 H 0.97000 * 120.00043 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 16 2.5013 1.3903 0.0000 4 6 3.9099 0.4250 -0.0050 5 17 5.5323 1.0429 -0.0120 6 7 3.6012 -0.8251 -0.0029 7 6 2.2931 -1.0994 0.0031 8 6 1.7583 -2.4713 0.0057 9 8 0.5560 -2.6553 0.0107 10 7 2.6010 -3.5230 0.0026 11 6 4.0790 -3.4777 -0.0040 12 6 4.5310 -4.9949 -0.0667 13 1 5.5433 -5.1887 -0.4213 14 6 3.3443 -5.5882 -0.9142 15 6 2.2309 -4.9694 0.0040 16 1 1.1990 -5.2015 -0.2592 17 6 2.7219 -5.4858 1.3920 18 7 4.1967 -5.5203 1.2906 19 6 5.0780 -5.9431 2.2496 20 1 6.1401 -5.9196 2.0551 21 6 4.6062 -6.4020 3.4718 22 7 3.3121 -6.4255 3.7109 23 14 5.8083 -6.9795 4.7798 24 1 7.1964 -6.8485 4.2688 25 1 5.6491 -6.1483 6.0001 26 1 5.5351 -8.4012 5.1102 27 1 -0.3634 0.0024 1.0277 28 1 -0.3633 0.8888 -0.5160 29 1 -0.3634 -0.8911 -0.5117 30 1 4.4372 -2.9418 -0.8829 31 1 4.4470 -3.0016 0.9048 32 1 3.3299 -6.6781 -0.9068 33 1 3.3171 -5.1858 -1.9268 34 1 2.3322 -6.4856 1.5833 35 1 2.4128 -4.8007 2.1815 36 1 2.9825 -6.7459 4.5651 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032513506.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:37 Heat of formation + Delta-G solvation = 51.429039 kcal Electronic energy + Delta-G solvation = -23683.383239 eV Core-core repulsion = 20128.725571 eV Total energy + Delta-G solvation = -3554.657668 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.055 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.97824 -40.75011 -39.07145 -37.97409 -35.51411 -33.72286 -33.30217 -30.91690 -30.16487 -28.67160 -26.99422 -25.72266 -25.36596 -23.64619 -21.59242 -21.32419 -20.06924 -19.74303 -18.63498 -17.59309 -17.43981 -17.06000 -16.85047 -16.39312 -15.85666 -15.67290 -15.01002 -14.71601 -14.57009 -14.17136 -14.09929 -13.70352 -13.45102 -13.34192 -13.11360 -12.88372 -12.85042 -12.76052 -12.70380 -12.55832 -12.33070 -12.17800 -12.01161 -11.90981 -11.54801 -11.15929 -10.94531 -10.68353 -10.56387 -10.03393 -9.53179 -8.90516 -7.85930 -5.21132 -0.76330 -0.43451 0.25631 0.68059 0.70981 1.44962 1.45747 1.56086 1.93408 2.17561 2.47213 3.08826 3.31046 3.40036 3.63735 3.72550 3.81077 3.84179 3.99659 4.17259 4.29054 4.61439 4.62073 4.68440 4.74085 4.87984 4.97924 4.99697 5.09876 5.21267 5.26132 5.42535 5.50702 5.63211 6.07176 6.08838 6.54524 7.00505 7.02324 7.69186 8.40217 9.25751 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.013840 B = 0.004236 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.668899 B = 6607.647761 C = 7471.801509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.187 4.187 3 S 0.369 5.631 4 C 0.017 3.983 5 Cl 0.038 6.962 6 N -0.445 5.445 7 C -0.015 4.015 8 C 0.596 3.404 9 O -0.566 6.566 10 N -0.594 5.594 11 C 0.118 3.882 12 C 0.131 3.869 13 H 0.132 0.868 14 C -0.125 4.125 15 C 0.104 3.896 16 H 0.123 0.877 17 C 0.189 3.811 18 N -0.616 5.616 19 C -0.229 4.229 20 H 0.093 0.907 21 C -0.071 4.071 22 N -0.957 5.957 23 Si 0.977 3.023 24 H -0.260 1.260 25 H -0.300 1.300 26 H -0.293 1.293 27 H 0.088 0.912 28 H 0.108 0.892 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.043 0.957 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.024 0.976 35 H -0.006 1.006 36 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.759 18.283 -12.669 22.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.312 4.312 3 S 0.623 5.377 4 C -0.287 4.287 5 Cl 0.066 6.934 6 N -0.163 5.163 7 C -0.149 4.149 8 C 0.384 3.616 9 O -0.448 6.448 10 N -0.325 5.325 11 C -0.007 4.007 12 C 0.024 3.976 13 H 0.150 0.850 14 C -0.164 4.164 15 C 0.001 3.999 16 H 0.141 0.859 17 C 0.063 3.937 18 N -0.340 5.340 19 C -0.358 4.358 20 H 0.111 0.889 21 C -0.263 4.263 22 N -0.607 5.607 23 Si 0.806 3.194 24 H -0.184 1.184 25 H -0.228 1.228 26 H -0.220 1.220 27 H 0.107 0.893 28 H 0.127 0.873 29 H 0.106 0.894 30 H 0.099 0.901 31 H 0.061 0.939 32 H 0.107 0.893 33 H 0.118 0.882 34 H 0.042 0.958 35 H 0.012 0.988 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -0.913 18.864 -12.426 22.607 hybrid contribution 0.404 -1.516 1.498 2.169 sum -0.509 17.348 -10.927 20.509 Atomic orbital electron populations 1.20646 0.83804 1.05528 1.04537 1.26166 1.05256 0.96761 1.03009 1.82354 0.89563 1.03433 1.62397 1.27319 0.96431 0.93803 1.11098 1.98434 1.14866 1.83373 1.96743 1.66777 1.17215 1.18466 1.13883 1.19852 0.87170 0.95349 1.12550 1.16978 0.85013 0.82830 0.76818 1.90693 1.14526 1.85400 1.54141 1.49044 1.08437 1.05742 1.69299 1.23435 0.77809 0.98848 1.00564 1.24206 0.98505 0.89833 0.85035 0.84997 1.24060 0.93933 1.00798 0.97629 1.24244 0.99893 0.78587 0.97183 0.85913 1.21519 0.84079 0.96626 0.91445 1.45510 1.01795 1.74115 1.12612 1.19570 0.89491 1.33700 0.93055 0.88932 1.25652 0.97590 1.02860 1.00220 1.70162 1.12993 1.53953 1.23582 0.85018 0.78846 0.76881 0.78674 1.18356 1.22783 1.22010 0.89323 0.87319 0.89426 0.90103 0.93896 0.89301 0.88186 0.95764 0.98809 0.94663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.77 9.64 71.23 0.69 -1.09 16 2 C -0.19 -4.59 6.40 24.97 0.16 -4.43 16 3 S 0.37 6.25 22.93 -56.49 -1.30 4.96 16 4 C 0.02 0.42 7.98 130.69 1.04 1.46 16 5 Cl 0.04 0.79 29.33 -2.72 -0.08 0.71 16 6 N -0.45 -14.06 7.91 -183.80 -1.45 -15.51 16 7 C -0.02 -0.50 6.63 40.52 0.27 -0.24 16 8 C 0.60 23.44 7.87 86.61 0.68 24.12 16 9 O -0.57 -23.61 14.44 -4.13 -0.06 -23.66 16 10 N -0.59 -23.78 2.95 -767.44 -2.27 -26.05 16 11 C 0.12 4.50 5.00 88.06 0.44 4.94 16 12 C 0.13 4.99 5.63 47.95 0.27 5.26 16 13 H 0.13 4.35 8.14 -2.39 -0.02 4.33 16 14 C -0.13 -4.17 6.85 33.57 0.23 -3.94 16 15 C 0.10 4.17 5.19 46.91 0.24 4.42 16 16 H 0.12 4.69 8.05 -2.39 -0.02 4.67 16 17 C 0.19 9.77 4.75 87.17 0.41 10.18 16 18 N -0.62 -31.10 3.02 -643.02 -1.94 -33.05 16 19 C -0.23 -12.65 10.38 84.03 0.87 -11.78 16 20 H 0.09 4.77 7.83 -2.91 -0.02 4.75 16 21 C -0.07 -4.08 5.49 84.86 0.47 -3.62 16 22 N -0.96 -59.57 10.56 21.65 0.23 -59.34 16 23 Si 0.98 46.46 29.55 68.60 2.03 48.49 16 24 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 25 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 26 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 27 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 28 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 29 H 0.09 2.28 6.00 -2.39 -0.01 2.27 16 30 H 0.08 2.71 7.60 -2.39 -0.02 2.69 16 31 H 0.04 1.92 7.80 -2.39 -0.02 1.90 16 32 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 33 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 34 H 0.02 1.38 7.47 -2.39 -0.02 1.36 16 35 H -0.01 -0.39 7.67 -2.39 -0.02 -0.40 16 36 H 0.24 14.88 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -73.55 325.25 2.06 -71.50 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: 1.12 Total: 6.66 kcal Atomic # 6 Polarization: 19.52 SS G_CDS: 5.78 Total: 25.30 kcal Atomic # 7 Polarization: -128.51 SS G_CDS: -5.43 Total: -133.95 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.06 Total: -23.66 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Atomic # 16 Polarization: 6.25 SS G_CDS: -1.30 Total: 4.96 kcal Atomic # 17 Polarization: 0.79 SS G_CDS: -0.08 Total: 0.71 kcal Total: -73.55 2.06 -71.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032513506.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.924 kcal (2) G-P(sol) polarization free energy of solvation -73.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds