Wall clock time and date at job start Tue Mar 31 2020 14:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34772 * 120.00005 * 2 1 4 4 O 1.21700 * 120.00283 * 185.51569 * 3 2 1 5 5 C 1.46673 * 119.99910 * 5.51232 * 3 2 1 6 6 C 1.37887 * 126.22234 * 186.67048 * 5 3 2 7 7 C 1.39884 * 107.08744 * 179.85084 * 6 5 3 8 8 Br 1.89097 * 126.07256 * 180.16013 * 7 6 5 9 9 C 1.35502 * 107.85237 * 0.41856 * 7 6 5 10 10 N 1.35592 * 108.86106 * 359.73950 * 9 7 6 11 11 H 0.96996 * 125.68045 * 180.02562 * 10 9 7 12 12 C 1.46501 * 119.99812 * 180.02562 * 2 1 3 13 13 C 1.53503 * 114.20906 * 59.99801 * 12 2 1 14 14 N 1.47064 * 87.98065 * 220.14631 * 13 12 2 15 15 C 1.36938 * 136.05028 * 207.08001 * 14 13 12 16 16 H 1.07998 * 120.00750 * 8.66408 * 15 14 13 17 17 C 1.38823 * 119.99807 * 188.65619 * 15 14 13 18 18 N 1.31617 * 119.99849 * 195.51484 * 17 15 14 19 19 Si 1.86801 * 119.99847 * 15.52032 * 17 15 14 20 20 H 1.48493 * 109.47064 * 269.99783 * 19 17 15 21 21 H 1.48509 * 109.47157 * 29.99570 * 19 17 15 22 22 H 1.48497 * 109.46940 * 149.99332 * 19 17 15 23 23 C 1.47061 * 87.88929 * 27.34012 * 14 13 12 24 24 H 1.09003 * 109.47115 * 274.99994 * 1 2 3 25 25 H 1.09000 * 109.47109 * 35.00066 * 1 2 3 26 26 H 1.09002 * 109.47195 * 155.00363 * 1 2 3 27 27 H 1.08000 * 126.45743 * 0.02562 * 6 5 3 28 28 H 1.08003 * 125.56579 * 179.76185 * 9 7 6 29 29 H 1.09005 * 113.27897 * 193.06560 * 12 2 1 30 30 H 1.08999 * 113.46224 * 105.36498 * 13 12 2 31 31 H 1.08999 * 113.46390 * 334.92362 * 13 12 2 32 32 H 0.96993 * 120.00210 * 354.92308 * 18 17 15 33 33 H 1.09002 * 113.46727 * 87.43595 * 23 14 13 34 34 H 1.08994 * 113.46801 * 217.87212 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1697 -0.1013 5 6 1.4106 2.4344 0.1220 6 6 1.9499 3.6984 0.0081 7 6 0.9040 4.6094 0.1895 8 35 1.0473 6.4942 0.1367 9 6 -0.2291 3.9014 0.4155 10 7 0.0657 2.5784 0.3770 11 1 -0.5661 1.8541 0.5071 12 6 2.1975 -1.2688 -0.0006 13 6 1.9059 -2.1634 -1.2134 14 7 1.9169 -3.3161 -0.3002 15 6 2.1884 -4.6542 -0.4048 16 1 2.6110 -5.0499 -1.3165 17 6 1.9205 -5.5022 0.6612 18 7 2.4479 -6.7077 0.6917 19 14 0.8113 -4.9323 2.0520 20 1 1.6314 -4.2766 3.1021 21 1 -0.1850 -3.9648 1.5260 22 1 0.1058 -6.1024 2.6336 23 6 1.5016 -2.4006 0.7731 24 1 -0.3633 0.0896 1.0238 25 1 -0.3633 0.8418 -0.5895 26 1 -0.3634 -0.9314 -0.4343 27 1 2.9843 3.9395 -0.1874 28 1 -1.2072 4.3222 0.5964 29 1 3.2576 -1.1543 0.2258 30 1 2.7145 -2.1808 -1.9442 31 1 0.9319 -1.9773 -1.6658 32 1 2.9631 -7.0309 -0.0638 33 1 0.4209 -2.2770 0.8444 34 1 1.9655 -2.6202 1.7347 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043259217.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:16 Heat of formation + Delta-G solvation = 103.733486 kcal Electronic energy + Delta-G solvation = -19704.554733 eV Core-core repulsion = 16494.984599 eV Total energy + Delta-G solvation = -3209.570134 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 327.032 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -41.84724 -39.78678 -38.00088 -35.11489 -32.64537 -32.20430 -30.42693 -29.32785 -27.89335 -27.22502 -25.41978 -23.88954 -21.77658 -20.74234 -20.40483 -19.42536 -17.93449 -17.57090 -16.71156 -16.06428 -15.86795 -15.06964 -14.52617 -14.39334 -13.99681 -13.72360 -13.42534 -13.29623 -13.08179 -12.99531 -12.37373 -12.15154 -12.05722 -11.78389 -11.36630 -11.29129 -10.73361 -10.47662 -10.33582 -10.07679 -9.80609 -9.33721 -9.15918 -8.81327 -8.67942 -8.44416 -7.30947 -6.40603 -3.34041 1.16908 1.50467 2.09846 2.66898 2.98311 3.19796 3.31773 3.37177 3.53006 4.31587 4.49899 4.58618 4.62074 4.71749 4.84049 4.88682 5.13202 5.25294 5.27238 5.34499 5.59139 5.62674 5.73853 6.01198 6.12989 6.17445 6.24124 6.29756 6.34179 6.79981 6.90440 6.97975 7.30729 8.05114 8.15256 8.87409 9.39487 10.23531 11.09224 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.044388 B = 0.002589 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.650177 B =10810.309915 C =11115.547497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.599 5.599 3 C 0.587 3.413 4 O -0.522 6.522 5 C -0.034 4.034 6 C -0.082 4.082 7 C -0.181 4.181 8 Br -0.031 7.031 9 C 0.054 3.946 10 N -0.536 5.536 11 H 0.428 0.572 12 C 0.103 3.897 13 C 0.107 3.893 14 N -0.614 5.614 15 C -0.308 4.308 16 H 0.085 0.915 17 C -0.021 4.021 18 N -0.927 5.927 19 Si 1.063 2.937 20 H -0.292 1.292 21 H -0.284 1.284 22 H -0.293 1.293 23 C 0.092 3.908 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.095 0.905 27 H 0.157 0.843 28 H 0.180 0.820 29 H 0.129 0.871 30 H 0.052 0.948 31 H 0.037 0.963 32 H 0.263 0.737 33 H 0.048 0.952 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.498 27.414 -0.353 29.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.332 5.332 3 C 0.375 3.625 4 O -0.397 6.397 5 C -0.148 4.148 6 C -0.109 4.109 7 C -0.267 4.267 8 Br 0.053 6.947 9 C -0.086 4.086 10 N -0.140 5.140 11 H 0.275 0.725 12 C 0.000 4.000 13 C -0.021 4.021 14 N -0.342 5.342 15 C -0.434 4.434 16 H 0.102 0.898 17 C -0.221 4.221 18 N -0.568 5.568 19 Si 0.894 3.106 20 H -0.219 1.219 21 H -0.211 1.211 22 H -0.220 1.220 23 C -0.034 4.034 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.114 0.886 27 H 0.175 0.825 28 H 0.197 0.803 29 H 0.146 0.854 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.430 27.137 1.026 28.747 hybrid contribution -0.051 -0.301 -1.471 1.503 sum -9.481 26.836 -0.445 28.465 Atomic orbital electron populations 1.22179 0.80969 1.04382 1.01404 1.47797 1.06302 1.06247 1.72810 1.17052 0.86743 0.81690 0.76997 1.90861 1.12707 1.86331 1.49851 1.20521 0.83309 0.95334 1.15595 1.21191 0.99300 0.88775 1.01647 1.21013 0.96234 0.90819 1.18635 1.96615 1.98664 1.01170 1.98289 1.21943 0.99453 0.82672 1.04517 1.43248 1.08998 1.07968 1.53767 0.72517 1.23671 0.97856 0.79052 0.99468 1.22797 0.98736 0.86650 0.93908 1.45873 1.79599 1.03864 1.04892 1.20109 1.39667 0.79494 1.04116 0.89782 1.25823 1.00860 0.94680 1.00741 1.70887 1.35447 1.18856 1.31600 0.83758 0.76619 0.74687 0.75529 1.21946 1.21068 1.22043 1.23121 0.97545 0.88047 0.94728 0.92032 0.91180 0.88607 0.82543 0.80274 0.85366 0.92958 0.94578 0.92631 0.93434 0.92363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 50. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.52 7.61 59.85 0.46 0.98 16 2 N -0.60 -8.39 3.12 -175.10 -0.55 -8.94 16 3 C 0.59 8.74 7.63 -12.86 -0.10 8.64 16 4 O -0.52 -9.65 16.43 5.19 0.09 -9.57 16 5 C -0.03 -0.40 6.64 -81.98 -0.54 -0.95 16 6 C -0.08 -0.96 10.64 -39.09 -0.42 -1.38 16 7 C -0.18 -1.77 6.53 -39.94 -0.26 -2.03 16 8 Br -0.03 -0.28 34.08 -68.01 -2.32 -2.59 16 9 C 0.05 0.41 11.86 -16.87 -0.20 0.21 16 10 N -0.54 -4.38 5.07 -9.36 -0.05 -4.43 16 11 H 0.43 2.46 4.90 -40.82 -0.20 2.26 16 12 C 0.10 1.82 4.55 -67.68 -0.31 1.51 16 13 C 0.11 2.06 8.23 -8.50 -0.07 1.99 16 14 N -0.61 -14.68 3.61 -184.62 -0.67 -15.35 16 15 C -0.31 -8.70 11.03 -15.05 -0.17 -8.86 16 16 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 17 C -0.02 -0.62 5.50 -17.43 -0.10 -0.71 16 18 N -0.93 -28.78 13.70 55.49 0.76 -28.02 16 19 Si 1.06 25.66 25.53 -169.99 -4.34 21.32 16 20 H -0.29 -6.81 6.96 56.52 0.39 -6.42 16 21 H -0.28 -6.17 5.70 56.52 0.32 -5.85 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 23 C 0.09 1.84 5.02 -8.37 -0.04 1.80 16 24 H 0.06 0.46 7.57 -51.93 -0.39 0.07 16 25 H 0.07 0.50 5.48 -51.93 -0.28 0.22 16 26 H 0.10 1.00 5.98 -51.93 -0.31 0.69 16 27 H 0.16 1.85 8.06 -52.49 -0.42 1.43 16 28 H 0.18 0.74 8.06 -52.48 -0.42 0.32 16 29 H 0.13 2.46 7.33 -51.93 -0.38 2.08 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.04 0.64 7.04 -51.93 -0.37 0.28 16 32 H 0.26 8.09 8.73 -40.82 -0.36 7.73 16 33 H 0.05 0.87 5.32 -51.93 -0.28 0.60 16 34 H 0.06 1.22 6.32 -51.93 -0.33 0.90 16 LS Contribution 297.55 15.07 4.48 4.48 Total: -1.00 -33.87 297.55 -7.80 -41.67 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -3.47 Total: 0.22 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -1.75 Total: 1.19 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: -0.50 Total: -56.73 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.57 kcal Atomic # 14 Polarization: 25.66 SS G_CDS: -4.34 Total: 21.32 kcal Atomic # 35 Polarization: -0.28 SS G_CDS: -2.32 Total: -2.59 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -33.87 -7.80 -41.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043259217.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.405 kcal (2) G-P(sol) polarization free energy of solvation -33.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds