Wall clock time and date at job start Tue Mar 31 2020 14:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34772 * 120.00005 * 2 1 4 4 O 1.21700 * 120.00283 * 185.51569 * 3 2 1 5 5 C 1.46673 * 119.99910 * 5.51232 * 3 2 1 6 6 C 1.37887 * 126.22234 * 186.67048 * 5 3 2 7 7 C 1.39884 * 107.08744 * 179.85084 * 6 5 3 8 8 Br 1.89097 * 126.07256 * 180.16013 * 7 6 5 9 9 C 1.35502 * 107.85237 * 0.41856 * 7 6 5 10 10 N 1.35592 * 108.86106 * 359.73950 * 9 7 6 11 11 H 0.96996 * 125.68045 * 180.02562 * 10 9 7 12 12 C 1.46501 * 119.99812 * 180.02562 * 2 1 3 13 13 C 1.53503 * 114.20906 * 59.99801 * 12 2 1 14 14 N 1.47064 * 87.98065 * 220.14631 * 13 12 2 15 15 C 1.36938 * 136.05028 * 207.08001 * 14 13 12 16 16 H 1.07998 * 120.00750 * 8.66408 * 15 14 13 17 17 C 1.38823 * 119.99807 * 188.65619 * 15 14 13 18 18 N 1.31617 * 119.99849 * 195.51484 * 17 15 14 19 19 Si 1.86801 * 119.99847 * 15.52032 * 17 15 14 20 20 H 1.48493 * 109.47064 * 269.99783 * 19 17 15 21 21 H 1.48509 * 109.47157 * 29.99570 * 19 17 15 22 22 H 1.48497 * 109.46940 * 149.99332 * 19 17 15 23 23 C 1.47061 * 87.88929 * 27.34012 * 14 13 12 24 24 H 1.09003 * 109.47115 * 274.99994 * 1 2 3 25 25 H 1.09000 * 109.47109 * 35.00066 * 1 2 3 26 26 H 1.09002 * 109.47195 * 155.00363 * 1 2 3 27 27 H 1.08000 * 126.45743 * 0.02562 * 6 5 3 28 28 H 1.08003 * 125.56579 * 179.76185 * 9 7 6 29 29 H 1.09005 * 113.27897 * 193.06560 * 12 2 1 30 30 H 1.08999 * 113.46224 * 105.36498 * 13 12 2 31 31 H 1.08999 * 113.46390 * 334.92362 * 13 12 2 32 32 H 0.96993 * 120.00210 * 354.92308 * 18 17 15 33 33 H 1.09002 * 113.46727 * 87.43595 * 23 14 13 34 34 H 1.08994 * 113.46801 * 217.87212 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1697 -0.1013 5 6 1.4106 2.4344 0.1220 6 6 1.9499 3.6984 0.0081 7 6 0.9040 4.6094 0.1895 8 35 1.0473 6.4942 0.1367 9 6 -0.2291 3.9014 0.4155 10 7 0.0657 2.5784 0.3770 11 1 -0.5661 1.8541 0.5071 12 6 2.1975 -1.2688 -0.0006 13 6 1.9059 -2.1634 -1.2134 14 7 1.9169 -3.3161 -0.3002 15 6 2.1884 -4.6542 -0.4048 16 1 2.6110 -5.0499 -1.3165 17 6 1.9205 -5.5022 0.6612 18 7 2.4479 -6.7077 0.6917 19 14 0.8113 -4.9323 2.0520 20 1 1.6314 -4.2766 3.1021 21 1 -0.1850 -3.9648 1.5260 22 1 0.1058 -6.1024 2.6336 23 6 1.5016 -2.4006 0.7731 24 1 -0.3633 0.0896 1.0238 25 1 -0.3633 0.8418 -0.5895 26 1 -0.3634 -0.9314 -0.4343 27 1 2.9843 3.9395 -0.1874 28 1 -1.2072 4.3222 0.5964 29 1 3.2576 -1.1543 0.2258 30 1 2.7145 -2.1808 -1.9442 31 1 0.9319 -1.9773 -1.6658 32 1 2.9631 -7.0309 -0.0638 33 1 0.4209 -2.2770 0.8444 34 1 1.9655 -2.6202 1.7347 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001043259217.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:15 Heat of formation + Delta-G solvation = 79.241710 kcal Electronic energy + Delta-G solvation = -19705.616776 eV Core-core repulsion = 16494.984599 eV Total energy + Delta-G solvation = -3210.632177 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 327.032 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.67069 -41.07010 -39.39138 -36.34594 -34.50689 -33.18776 -31.22105 -30.51120 -29.22727 -28.25710 -27.02018 -25.28958 -23.13922 -21.71810 -21.16151 -20.97090 -19.55794 -18.87393 -17.96273 -17.30275 -16.93750 -16.56159 -15.87741 -15.39830 -15.24734 -15.13900 -14.89183 -14.24981 -13.98244 -13.74769 -13.66922 -13.57567 -13.41975 -13.14657 -13.05793 -12.53945 -12.07355 -11.97131 -11.56420 -11.36675 -11.33875 -11.08171 -10.87565 -10.00501 -9.73555 -9.31818 -9.27796 -8.67473 -5.53232 0.29434 0.82237 1.36444 1.38397 1.50173 1.64116 1.65925 2.11352 2.23665 2.54019 2.98462 3.12462 3.43497 3.50948 3.90466 4.03114 4.05367 4.16444 4.20763 4.36337 4.49469 4.51246 4.53324 4.64488 4.74283 4.83341 4.94208 5.13018 5.32182 5.39469 5.58904 5.90392 6.21073 6.31027 6.64041 6.93594 7.27124 8.19156 8.83990 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.044388 B = 0.002589 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.650177 B =10810.309915 C =11115.547497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.596 5.596 3 C 0.586 3.414 4 O -0.572 6.572 5 C -0.054 4.054 6 C -0.092 4.092 7 C -0.204 4.204 8 Br -0.026 7.026 9 C 0.090 3.910 10 N -0.519 5.519 11 H 0.441 0.559 12 C 0.125 3.875 13 C 0.109 3.891 14 N -0.648 5.648 15 C -0.297 4.297 16 H 0.048 0.952 17 C -0.083 4.083 18 N -0.965 5.965 19 Si 1.102 2.898 20 H -0.280 1.280 21 H -0.240 1.240 22 H -0.301 1.301 23 C 0.094 3.906 24 H 0.093 0.907 25 H 0.098 0.902 26 H 0.094 0.906 27 H 0.142 0.858 28 H 0.224 0.776 29 H 0.105 0.895 30 H 0.039 0.961 31 H 0.068 0.932 32 H 0.247 0.753 33 H 0.082 0.918 34 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.092 30.476 0.617 33.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 N -0.327 5.327 3 C 0.377 3.623 4 O -0.451 6.451 5 C -0.168 4.168 6 C -0.120 4.120 7 C -0.289 4.289 8 Br 0.057 6.943 9 C -0.052 4.052 10 N -0.124 5.124 11 H 0.291 0.709 12 C 0.020 3.980 13 C -0.018 4.018 14 N -0.377 5.377 15 C -0.424 4.424 16 H 0.066 0.934 17 C -0.275 4.275 18 N -0.609 5.609 19 Si 0.926 3.074 20 H -0.207 1.207 21 H -0.164 1.164 22 H -0.229 1.229 23 C -0.032 4.032 24 H 0.111 0.889 25 H 0.116 0.884 26 H 0.113 0.887 27 H 0.160 0.840 28 H 0.240 0.760 29 H 0.123 0.877 30 H 0.058 0.942 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.099 0.901 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -13.071 30.251 1.965 33.013 hybrid contribution 1.095 -1.091 -1.888 2.440 sum -11.976 29.160 0.077 31.523 Atomic orbital electron populations 1.22567 0.77770 1.05648 1.04050 1.47696 1.08113 1.04471 1.72458 1.17417 0.86327 0.82644 0.75942 1.90835 1.15016 1.87092 1.52184 1.19904 0.84929 0.93547 1.18372 1.21249 0.99450 0.89658 1.01597 1.21142 0.96528 0.91184 1.20068 1.96625 1.98727 1.00589 1.98333 1.22606 1.00272 0.81816 1.00457 1.43159 1.07624 1.08819 1.52836 0.70861 1.22924 0.97009 0.80498 0.97564 1.22962 0.99738 0.85069 0.94028 1.45805 1.80536 1.03164 1.08179 1.19908 1.37982 0.81963 1.02550 0.93437 1.27277 1.01997 0.94307 1.03898 1.71014 1.37635 1.20726 1.31521 0.83351 0.75855 0.75164 0.73059 1.20713 1.16375 1.22880 1.23319 0.99267 0.87224 0.93365 0.88923 0.88397 0.88723 0.83990 0.75958 0.87708 0.94219 0.91495 0.94398 0.90063 0.93288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 7.61 127.77 0.97 1.56 16 2 N -0.60 -15.10 3.12 -826.10 -2.57 -17.67 16 3 C 0.59 16.65 7.63 86.45 0.66 17.31 16 4 O -0.57 -21.50 16.43 -4.35 -0.07 -21.57 16 5 C -0.05 -1.15 6.64 40.35 0.27 -0.88 16 6 C -0.09 -2.01 10.64 22.59 0.24 -1.77 16 7 C -0.20 -3.38 6.53 22.04 0.14 -3.23 16 8 Br -0.03 -0.41 34.08 -20.37 -0.69 -1.10 16 9 C 0.09 0.91 11.86 83.48 0.99 1.90 16 10 N -0.52 -6.02 5.07 -183.54 -0.93 -6.95 16 11 H 0.44 2.48 4.90 -92.71 -0.45 2.02 16 12 C 0.13 4.24 4.55 45.55 0.21 4.45 16 13 C 0.11 4.07 8.23 83.18 0.68 4.75 16 14 N -0.65 -30.53 3.61 -738.03 -2.67 -33.20 16 15 C -0.30 -17.15 11.03 84.04 0.93 -16.22 16 16 H 0.05 3.00 8.06 -2.91 -0.02 2.98 16 17 C -0.08 -4.87 5.50 84.87 0.47 -4.41 16 18 N -0.96 -62.09 13.70 21.65 0.30 -61.80 16 19 Si 1.10 50.56 25.53 68.60 1.75 52.31 16 20 H -0.28 -12.26 6.96 99.48 0.69 -11.57 16 21 H -0.24 -9.13 5.70 99.48 0.57 -8.56 16 22 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 23 C 0.09 3.49 5.02 83.27 0.42 3.90 16 24 H 0.09 0.81 7.57 -2.39 -0.02 0.79 16 25 H 0.10 0.87 5.48 -2.39 -0.01 0.85 16 26 H 0.09 1.46 5.98 -2.39 -0.01 1.44 16 27 H 0.14 3.42 8.06 -2.91 -0.02 3.39 16 28 H 0.22 0.31 8.06 -2.91 -0.02 0.29 16 29 H 0.10 4.09 7.33 -2.38 -0.02 4.07 16 30 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.07 2.15 7.04 -2.39 -0.02 2.14 16 32 H 0.25 16.03 8.73 -92.71 -0.81 15.22 16 33 H 0.08 2.53 5.32 -2.39 -0.01 2.52 16 34 H 0.05 1.94 6.32 -2.39 -0.02 1.92 16 Total: -1.00 -78.56 297.55 1.59 -76.96 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: 0.51 Total: 5.66 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: 5.98 Total: 7.36 kcal Atomic # 7 Polarization: -113.74 SS G_CDS: -5.87 Total: -119.61 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.07 Total: -21.57 kcal Atomic # 14 Polarization: 50.56 SS G_CDS: 1.75 Total: 52.31 kcal Atomic # 35 Polarization: -0.41 SS G_CDS: -0.69 Total: -1.10 kcal Total: -78.56 1.59 -76.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043259217.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.205 kcal (2) G-P(sol) polarization free energy of solvation -78.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds