Wall clock time and date at job start Tue Mar 31 2020 15:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86804 * 120.00087 * 2 1 4 4 H 1.48500 * 109.47412 * 274.98846 * 3 2 1 5 5 H 1.48500 * 109.46717 * 34.98805 * 3 2 1 6 6 H 1.48498 * 109.47274 * 154.98593 * 3 2 1 7 7 C 1.38809 * 120.00299 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00199 * 186.92090 * 7 2 1 9 9 N 1.36936 * 119.99983 * 6.91889 * 7 2 1 10 10 C 1.47138 * 125.58713 * 354.12203 * 9 7 2 11 11 C 1.54598 * 107.36861 * 180.66437 * 10 9 7 12 12 C 1.53651 * 102.73226 * 20.75546 * 11 10 9 13 13 C 1.52365 * 116.40083 * 197.08155 * 12 11 10 14 14 N 1.47891 * 85.59305 * 218.64443 * 13 12 11 15 15 C 1.34773 * 134.34487 * 203.48579 * 14 13 12 16 16 O 1.21627 * 119.99942 * 180.02562 * 15 14 13 17 17 C 1.47226 * 120.00018 * 359.97438 * 15 14 13 18 18 N 1.30601 * 125.53285 * 180.02562 * 17 15 14 19 19 C 1.30743 * 115.89951 * 179.97438 * 18 17 15 20 20 Cl 1.73603 * 122.12231 * 179.97438 * 19 18 17 21 21 C 1.34335 * 115.75418 * 359.97438 * 19 18 17 22 22 S 1.71069 * 109.09299 * 359.76647 * 21 19 18 23 23 C 1.47891 * 91.31185 * 23.48680 * 14 13 12 24 24 C 1.47728 * 125.58998 * 173.81628 * 9 7 2 25 25 H 0.97000 * 120.00202 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.86525 * 300.11107 * 10 9 7 27 27 H 1.09003 * 109.86945 * 61.08191 * 10 9 7 28 28 H 1.09007 * 110.75716 * 139.06433 * 11 10 9 29 29 H 1.08994 * 110.75902 * 262.25534 * 11 10 9 30 30 H 1.09004 * 113.85471 * 332.81322 * 13 12 11 31 31 H 1.09002 * 113.85486 * 104.47732 * 13 12 11 32 32 H 1.07999 * 125.45187 * 179.97438 * 21 19 18 33 33 H 1.09001 * 113.85242 * 222.34886 * 23 14 13 34 34 H 1.08999 * 113.97407 * 90.69522 * 23 14 13 35 35 H 1.09004 * 110.39514 * 276.59870 * 24 9 7 36 36 H 1.08998 * 110.39815 * 39.00792 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1074 -1.3947 5 1 1.5042 2.6199 0.8028 6 1 3.5964 1.4121 0.5920 7 6 2.0102 -1.2021 -0.0005 8 1 3.0843 -1.2055 0.1122 9 7 1.3331 -2.3836 -0.1439 10 6 -0.1302 -2.5326 -0.1834 11 6 -0.4366 -4.0398 -0.3404 12 6 0.8609 -4.7018 0.1484 13 6 1.0645 -6.1612 -0.2391 14 7 1.6328 -6.3233 1.1166 15 6 2.4884 -7.1984 1.6809 16 8 2.7865 -7.0865 2.8548 17 6 3.0614 -8.2905 0.8768 18 7 3.8968 -9.1955 1.3114 19 6 4.2869 -10.0815 0.4327 20 17 5.3952 -11.3554 0.8358 21 6 3.7756 -9.9435 -0.8019 22 16 2.7253 -8.5935 -0.8249 23 6 0.8885 -5.1430 1.6066 24 6 1.9520 -3.7169 -0.2907 25 1 -0.4850 0.8400 0.0004 26 1 -0.5655 -2.1608 0.7442 27 1 -0.5362 -1.9798 -1.0306 28 1 -1.2789 -4.3302 0.2876 29 1 -0.6310 -4.2878 -1.3838 30 1 0.1355 -6.7094 -0.3961 31 1 1.7883 -6.3076 -1.0409 32 1 3.9905 -10.5845 -1.6441 33 1 1.4742 -4.4901 2.2537 34 1 -0.0945 -5.3775 2.0149 35 1 2.2287 -3.8950 -1.3299 36 1 2.8251 -3.8038 0.3561 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072915277.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:22 Heat of formation + Delta-G solvation = 83.078715 kcal Electronic energy + Delta-G solvation = -22790.609726 eV Core-core repulsion = 19237.324490 eV Total energy + Delta-G solvation = -3553.285235 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.055 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -40.85896 -40.14898 -38.19560 -36.85857 -35.72996 -32.38416 -31.07300 -29.85084 -28.71373 -27.09168 -26.23862 -25.56272 -23.73071 -21.66972 -20.36871 -19.81400 -18.74955 -18.41451 -17.21155 -16.90811 -16.36617 -15.93172 -15.83118 -15.04576 -14.89767 -14.50000 -14.04185 -13.84133 -13.67380 -13.29426 -12.79329 -12.51476 -12.40387 -12.05294 -11.94257 -11.86898 -11.50767 -11.17115 -11.00141 -10.81728 -10.80892 -10.52004 -10.23242 -10.19116 -10.12248 -9.97059 -9.78883 -9.70782 -9.19401 -8.80841 -8.62861 -6.90056 -5.78061 -3.10741 -0.23612 0.62050 0.81696 1.77752 1.83178 2.43944 2.95282 3.38127 3.44210 3.45616 3.81255 4.36583 4.44288 4.52463 4.58641 4.81653 5.00423 5.04021 5.21631 5.29738 5.42426 5.51101 5.59028 5.71335 5.84696 6.03202 6.10556 6.36885 6.38204 6.55775 6.59878 6.90856 7.44804 7.48800 7.54544 7.76993 7.88592 8.19164 9.16130 9.75821 10.40491 11.33986 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.024538 B = 0.002751 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.814637 B =10174.670993 C =10435.891539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.005 4.005 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.230 4.230 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.176 3.824 11 C -0.130 4.130 12 C -0.100 4.100 13 C 0.101 3.899 14 N -0.633 5.633 15 C 0.612 3.388 16 O -0.499 6.499 17 C 0.022 3.978 18 N -0.399 5.399 19 C 0.108 3.892 20 Cl -0.006 7.006 21 C -0.270 4.270 22 S 0.242 5.758 23 C 0.139 3.861 24 C 0.160 3.840 25 H 0.253 0.747 26 H 0.045 0.955 27 H 0.048 0.952 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.194 0.806 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.027 0.973 36 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.396 -20.678 -5.350 21.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.201 4.201 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.358 4.358 8 H 0.096 0.904 9 N -0.330 5.330 10 C 0.052 3.948 11 C -0.169 4.169 12 C -0.102 4.102 13 C -0.023 4.023 14 N -0.370 5.370 15 C 0.396 3.604 16 O -0.373 6.373 17 C -0.255 4.255 18 N -0.116 5.116 19 C -0.057 4.057 20 Cl 0.022 6.978 21 C -0.412 4.412 22 S 0.497 5.503 23 C 0.018 3.982 24 C 0.034 3.966 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.116 0.884 31 H 0.102 0.898 32 H 0.211 0.789 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.044 0.956 36 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 1.293 -20.123 -4.729 20.711 hybrid contribution 1.316 -0.225 0.131 1.341 sum 2.609 -20.347 -4.599 21.023 Atomic orbital electron populations 1.69954 1.04898 1.25148 1.56670 1.24798 0.95699 0.97654 1.01974 0.86130 0.78779 0.83575 0.77498 1.21604 1.21749 1.20600 1.19041 0.91144 0.82407 1.43237 0.90425 1.44534 1.01554 1.00856 1.86084 1.21243 0.84355 0.87971 1.01250 1.22682 0.94430 0.99457 1.00345 1.22456 1.00316 0.92604 0.94836 1.23363 0.98236 0.96339 0.84327 1.50053 1.43321 1.29401 1.14218 1.16151 0.79587 0.79227 0.85462 1.90883 1.59988 1.71673 1.14756 1.27315 1.02163 1.00838 0.95201 1.66062 1.09661 1.01814 1.34100 1.20439 1.00388 0.95683 0.89141 1.98407 1.59307 1.45516 1.94579 1.26680 1.05972 1.06412 1.02088 1.84209 1.37814 1.18484 1.09836 1.23093 0.95581 0.82263 0.97234 1.21071 0.92942 0.85176 0.97444 0.93697 0.93707 0.93336 0.91493 0.91429 0.88380 0.89755 0.78897 0.88813 0.89028 0.95582 0.94031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.86 10.35 55.49 0.57 -25.28 16 2 C 0.00 -0.13 5.48 -17.43 -0.10 -0.22 16 3 Si 0.91 21.57 29.56 -169.99 -5.02 16.54 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.23 -6.14 10.26 -15.06 -0.15 -6.30 16 8 H 0.08 2.03 7.84 -52.49 -0.41 1.62 16 9 N -0.60 -14.23 3.41 -170.49 -0.58 -14.81 16 10 C 0.18 3.83 5.40 -2.85 -0.02 3.82 16 11 C -0.13 -1.95 6.36 -25.55 -0.16 -2.12 16 12 C -0.10 -1.43 0.99 -154.85 -0.15 -1.59 16 13 C 0.10 1.07 6.65 -3.60 -0.02 1.05 16 14 N -0.63 -8.58 3.62 -188.26 -0.68 -9.26 16 15 C 0.61 9.58 8.04 -12.61 -0.10 9.48 16 16 O -0.50 -9.82 17.79 5.25 0.09 -9.73 16 17 C 0.02 0.29 7.45 -14.43 -0.11 0.18 16 18 N -0.40 -5.82 10.60 -8.61 -0.09 -5.91 16 19 C 0.11 1.25 7.22 -19.39 -0.14 1.11 16 20 Cl -0.01 -0.06 29.20 -51.86 -1.51 -1.58 16 21 C -0.27 -2.28 10.93 29.35 0.32 -1.96 16 22 S 0.24 2.07 19.93 -107.50 -2.14 -0.08 16 23 C 0.14 1.98 8.15 -3.60 -0.03 1.95 16 24 C 0.16 2.96 6.63 -3.16 -0.02 2.93 16 25 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 26 H 0.04 1.09 7.55 -51.93 -0.39 0.70 16 27 H 0.05 1.19 7.35 -51.93 -0.38 0.81 16 28 H 0.07 0.87 7.99 -51.93 -0.41 0.46 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.79 6.50 -51.93 -0.34 0.45 16 32 H 0.19 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.09 1.55 8.12 -51.93 -0.42 1.13 16 34 H 0.09 1.12 8.04 -51.93 -0.42 0.70 16 35 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.04 0.81 8.07 -51.93 -0.42 0.39 16 LS Contribution 331.58 15.07 5.00 5.00 Total: -1.00 -32.55 331.58 -9.07 -41.62 By element: Atomic # 1 Polarization: -0.82 SS G_CDS: -4.02 Total: -4.84 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: -0.68 Total: 8.34 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: -0.78 Total: -55.27 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -2.14 Total: -0.08 kcal Atomic # 17 Polarization: -0.06 SS G_CDS: -1.51 Total: -1.58 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.55 -9.07 -41.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072915277.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.700 kcal (2) G-P(sol) polarization free energy of solvation -32.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.49 seconds