Wall clock time and date at job start Tue Mar 31 2020 15:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86804 * 119.99932 * 2 1 4 4 H 1.48503 * 109.46908 * 240.00301 * 3 2 1 5 5 H 1.48500 * 109.46878 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47094 * 120.00037 * 3 2 1 7 7 C 1.38811 * 120.00195 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00074 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99703 * 359.97438 * 7 2 1 10 10 C 1.47148 * 125.58016 * 0.02562 * 9 7 2 11 11 C 1.54626 * 107.37411 * 179.04336 * 10 9 7 12 12 C 1.53518 * 102.70440 * 339.38695 * 11 10 9 13 13 C 1.51782 * 117.00010 * 164.16582 * 12 11 10 14 14 N 1.47396 * 87.51859 * 92.92667 * 13 12 11 15 15 C 1.34771 * 135.85347 * 205.40662 * 14 13 12 16 16 O 1.21645 * 120.00042 * 0.02562 * 15 14 13 17 17 C 1.47247 * 120.00339 * 179.97438 * 15 14 13 18 18 C 1.35150 * 123.14014 * 179.73001 * 17 15 14 19 19 S 1.70937 * 108.86008 * 179.97438 * 18 17 15 20 20 C 1.70766 * 91.14858 * 0.28456 * 19 18 17 21 21 Cl 1.73602 * 124.72496 * 179.83119 * 20 19 18 22 22 N 1.28768 * 110.54969 * 359.83407 * 20 19 18 23 23 C 1.47386 * 88.29429 * 25.66352 * 14 13 12 24 24 C 1.47749 * 125.57712 * 179.97438 * 9 7 2 25 25 H 0.97001 * 119.99598 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.86250 * 59.59341 * 10 9 7 27 27 H 1.09001 * 109.86546 * 298.48986 * 10 9 7 28 28 H 1.09004 * 110.76166 * 221.08557 * 11 10 9 29 29 H 1.08994 * 110.76651 * 97.69124 * 11 10 9 30 30 H 1.08996 * 113.54509 * 338.26792 * 13 12 11 31 31 H 1.08996 * 113.60919 * 207.59424 * 13 12 11 32 32 H 1.07996 * 125.56815 * 0.04261 * 18 17 15 33 33 H 1.08997 * 113.54458 * 88.99462 * 23 14 13 34 34 H 1.09002 * 113.54491 * 219.67947 * 23 14 13 35 35 H 1.09005 * 110.40561 * 83.54910 * 24 9 7 36 36 H 1.08996 * 110.40949 * 321.12433 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1389 -2.5311 0.0017 11 6 -0.4550 -4.0446 -0.0216 12 6 0.8472 -4.6532 -0.5605 13 6 1.0380 -6.1475 -0.3749 14 7 0.4462 -6.3245 -1.7131 15 6 -0.2164 -7.3068 -2.3553 16 8 -0.4422 -8.3594 -1.7888 17 6 -0.6681 -7.1057 -3.7422 18 6 -1.3322 -8.0484 -4.4471 19 16 -1.6780 -7.4330 -6.0039 20 6 -0.9091 -5.9552 -5.6281 21 17 -0.7618 -4.6120 -6.7179 22 7 -0.4537 -5.9761 -4.4238 23 6 0.9001 -4.9623 -2.0457 24 6 1.9365 -3.7334 0.0017 25 1 -0.4849 0.8401 0.0004 26 1 -0.5580 -2.0515 -0.8829 27 1 -0.5551 -2.0796 0.9023 28 1 -1.2871 -4.2552 -0.6934 29 1 -0.6659 -4.4108 0.9831 30 1 0.4322 -6.5673 0.4281 31 1 2.0835 -6.4503 -0.3177 32 1 -1.6013 -9.0298 -4.0854 33 1 1.9069 -4.9283 -2.4619 34 1 0.1793 -4.3948 -2.6345 35 1 2.1989 -4.0315 1.0168 36 1 2.8172 -3.7509 -0.6401 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073105858.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:23 Heat of formation + Delta-G solvation = 83.233935 kcal Electronic energy + Delta-G solvation = -23056.575974 eV Core-core repulsion = 19503.297470 eV Total energy + Delta-G solvation = -3553.278504 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.055 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -40.97290 -39.89423 -38.03322 -37.16244 -35.65074 -32.20211 -30.86033 -29.68431 -28.77255 -26.60463 -25.87805 -25.18388 -23.75273 -22.13776 -20.26254 -19.90140 -18.65972 -18.16248 -16.84082 -16.67030 -16.32503 -15.90796 -15.56946 -14.98830 -14.75065 -14.37104 -14.23768 -13.80434 -13.56387 -13.07858 -12.51634 -12.35276 -12.16980 -12.09652 -11.91076 -11.77241 -11.73280 -10.98669 -10.89918 -10.66010 -10.50811 -10.30068 -10.22100 -10.11647 -10.07550 -9.89043 -9.65793 -9.60334 -9.28306 -8.57480 -8.54001 -6.81456 -5.68908 -3.02526 0.05007 0.33257 1.07270 1.50490 1.62790 2.89510 3.21712 3.42241 3.46517 3.47709 3.96551 4.47532 4.58317 4.76794 4.82136 5.02097 5.19374 5.27817 5.52053 5.57108 5.68814 5.76278 5.81030 5.90500 6.15367 6.23588 6.27171 6.49323 6.55446 6.69845 6.73610 6.89888 7.57523 7.64843 7.74377 7.84781 8.09819 8.27245 9.23697 9.83877 10.49680 11.42606 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.014265 B = 0.003616 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.351906 B = 7741.036453 C = 9227.427189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.911 3.089 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.181 3.819 11 C -0.117 4.117 12 C -0.109 4.109 13 C 0.121 3.879 14 N -0.623 5.623 15 C 0.618 3.382 16 O -0.543 6.543 17 C 0.033 3.967 18 C -0.226 4.226 19 S 0.272 5.728 20 C 0.047 3.953 21 Cl 0.036 6.964 22 N -0.420 5.420 23 C 0.133 3.867 24 C 0.155 3.845 25 H 0.252 0.748 26 H 0.047 0.953 27 H 0.043 0.957 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.198 0.802 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.027 0.973 36 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.461 -15.917 -12.941 20.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.357 4.357 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.056 3.944 11 C -0.155 4.155 12 C -0.111 4.111 13 C -0.001 4.001 14 N -0.355 5.355 15 C 0.404 3.596 16 O -0.421 6.421 17 C -0.102 4.102 18 C -0.368 4.368 19 S 0.524 5.476 20 C -0.257 4.257 21 Cl 0.064 6.936 22 N -0.138 5.138 23 C 0.011 3.989 24 C 0.028 3.972 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.215 0.785 33 H 0.103 0.897 34 H 0.109 0.891 35 H 0.044 0.956 36 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.944 -16.132 -13.510 21.408 hybrid contribution 0.813 1.023 0.729 1.496 sum -3.131 -15.109 -12.781 20.036 Atomic orbital electron populations 1.69957 1.04872 1.25099 1.56988 1.24784 0.95680 0.97602 1.02238 0.86216 0.78455 0.83297 0.77875 1.21188 1.21650 1.21205 1.19000 0.90400 0.82354 1.43923 0.90460 1.44523 1.01591 0.99649 1.87295 1.21209 0.84238 0.87795 1.01138 1.22466 0.94224 0.99290 0.99519 1.22190 1.00030 0.93190 0.95691 1.22861 0.98444 0.94533 0.84256 1.49568 1.53048 1.16094 1.16782 1.16384 0.78344 0.82120 0.82755 1.90815 1.58866 1.25784 1.66684 1.20198 1.03950 0.89010 0.97057 1.26779 1.04692 1.06624 0.98714 1.82922 1.49795 1.04584 1.10262 1.27245 1.05964 0.97625 0.94904 1.98461 1.96480 1.41718 1.56941 1.66825 1.18689 1.24000 1.04241 1.22829 1.00332 0.79001 0.96762 1.21115 0.93159 0.85720 0.97173 0.93738 0.93515 0.93837 0.92200 0.91855 0.90199 0.89452 0.78493 0.89715 0.89086 0.95567 0.93950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.88 10.30 55.49 0.57 -26.31 16 2 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 3 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.23 -6.25 10.28 -15.06 -0.15 -6.41 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.60 -15.01 3.41 -170.54 -0.58 -15.59 16 10 C 0.18 4.33 5.39 -2.83 -0.02 4.32 16 11 C -0.12 -2.19 6.39 -25.61 -0.16 -2.35 16 12 C -0.11 -1.85 1.05 -155.36 -0.16 -2.02 16 13 C 0.12 1.78 8.03 -7.47 -0.06 1.72 16 14 N -0.62 -9.87 3.70 -187.23 -0.69 -10.56 16 15 C 0.62 10.00 8.05 -12.60 -0.10 9.90 16 16 O -0.54 -9.81 17.48 5.24 0.09 -9.72 16 17 C 0.03 0.45 6.69 -84.51 -0.57 -0.11 16 18 C -0.23 -2.32 10.61 29.63 0.31 -2.01 16 19 S 0.27 2.13 22.96 -107.50 -2.47 -0.34 16 20 C 0.05 0.53 7.98 51.48 0.41 0.94 16 21 Cl 0.04 0.38 29.33 -51.86 -1.52 -1.14 16 22 N -0.42 -5.87 8.78 -9.44 -0.08 -5.96 16 23 C 0.13 2.16 6.93 -7.47 -0.05 2.11 16 24 C 0.16 3.03 6.71 -3.23 -0.02 3.01 16 25 H 0.25 7.19 8.31 -40.82 -0.34 6.86 16 26 H 0.05 1.25 7.38 -51.93 -0.38 0.86 16 27 H 0.04 1.16 7.49 -51.93 -0.39 0.77 16 28 H 0.06 1.10 8.07 -51.93 -0.42 0.68 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.08 1.15 8.13 -51.93 -0.42 0.72 16 31 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.20 1.68 8.03 -52.49 -0.42 1.26 16 33 H 0.08 1.31 8.07 -51.93 -0.42 0.89 16 34 H 0.09 1.62 7.35 -51.93 -0.38 1.24 16 35 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.04 0.80 8.01 -51.93 -0.42 0.38 16 LS Contribution 333.54 15.07 5.03 5.03 Total: -1.00 -32.12 333.54 -9.41 -41.53 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: -4.07 Total: -2.67 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: -0.67 Total: 8.82 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: -0.79 Total: -58.42 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: 2.13 SS G_CDS: -2.47 Total: -0.34 kcal Atomic # 17 Polarization: 0.38 SS G_CDS: -1.52 Total: -1.14 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.12 -9.41 -41.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073105858.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.764 kcal (2) G-P(sol) polarization free energy of solvation -32.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds