Wall clock time and date at job start Tue Mar 31 2020 15:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86804 * 119.99932 * 2 1 4 4 H 1.48503 * 109.46908 * 240.00301 * 3 2 1 5 5 H 1.48500 * 109.46878 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47094 * 120.00037 * 3 2 1 7 7 C 1.38811 * 120.00195 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00074 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99703 * 359.97438 * 7 2 1 10 10 C 1.47148 * 125.58016 * 0.02562 * 9 7 2 11 11 C 1.54626 * 107.37411 * 179.04336 * 10 9 7 12 12 C 1.53518 * 102.70440 * 339.38695 * 11 10 9 13 13 C 1.51782 * 117.00010 * 164.16582 * 12 11 10 14 14 N 1.47396 * 87.51859 * 92.92667 * 13 12 11 15 15 C 1.34771 * 135.85347 * 205.40662 * 14 13 12 16 16 O 1.21645 * 120.00042 * 0.02562 * 15 14 13 17 17 C 1.47247 * 120.00339 * 179.97438 * 15 14 13 18 18 C 1.35150 * 123.14014 * 179.73001 * 17 15 14 19 19 S 1.70937 * 108.86008 * 179.97438 * 18 17 15 20 20 C 1.70766 * 91.14858 * 0.28456 * 19 18 17 21 21 Cl 1.73602 * 124.72496 * 179.83119 * 20 19 18 22 22 N 1.28768 * 110.54969 * 359.83407 * 20 19 18 23 23 C 1.47386 * 88.29429 * 25.66352 * 14 13 12 24 24 C 1.47749 * 125.57712 * 179.97438 * 9 7 2 25 25 H 0.97001 * 119.99598 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.86250 * 59.59341 * 10 9 7 27 27 H 1.09001 * 109.86546 * 298.48986 * 10 9 7 28 28 H 1.09004 * 110.76166 * 221.08557 * 11 10 9 29 29 H 1.08994 * 110.76651 * 97.69124 * 11 10 9 30 30 H 1.08996 * 113.54509 * 338.26792 * 13 12 11 31 31 H 1.08996 * 113.60919 * 207.59424 * 13 12 11 32 32 H 1.07996 * 125.56815 * 0.04261 * 18 17 15 33 33 H 1.08997 * 113.54458 * 88.99462 * 23 14 13 34 34 H 1.09002 * 113.54491 * 219.67947 * 23 14 13 35 35 H 1.09005 * 110.40561 * 83.54910 * 24 9 7 36 36 H 1.08996 * 110.40949 * 321.12433 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1389 -2.5311 0.0017 11 6 -0.4550 -4.0446 -0.0216 12 6 0.8472 -4.6532 -0.5605 13 6 1.0380 -6.1475 -0.3749 14 7 0.4462 -6.3245 -1.7131 15 6 -0.2164 -7.3068 -2.3553 16 8 -0.4422 -8.3594 -1.7888 17 6 -0.6681 -7.1057 -3.7422 18 6 -1.3322 -8.0484 -4.4471 19 16 -1.6780 -7.4330 -6.0039 20 6 -0.9091 -5.9552 -5.6281 21 17 -0.7618 -4.6120 -6.7179 22 7 -0.4537 -5.9761 -4.4238 23 6 0.9001 -4.9623 -2.0457 24 6 1.9365 -3.7334 0.0017 25 1 -0.4849 0.8401 0.0004 26 1 -0.5580 -2.0515 -0.8829 27 1 -0.5551 -2.0796 0.9023 28 1 -1.2871 -4.2552 -0.6934 29 1 -0.6659 -4.4108 0.9831 30 1 0.4322 -6.5673 0.4281 31 1 2.0835 -6.4503 -0.3177 32 1 -1.6013 -9.0298 -4.0854 33 1 1.9069 -4.9283 -2.4619 34 1 0.1793 -4.3948 -2.6345 35 1 2.1989 -4.0315 1.0168 36 1 2.8172 -3.7509 -0.6401 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073105858.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:21 Heat of formation + Delta-G solvation = 62.176383 kcal Electronic energy + Delta-G solvation = -23057.489098 eV Core-core repulsion = 19503.297470 eV Total energy + Delta-G solvation = -3554.191628 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.055 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.16041 -40.98798 -39.26558 -37.98267 -37.33225 -34.09832 -31.83648 -31.26797 -30.37756 -27.95887 -27.22827 -26.48159 -25.37447 -23.22766 -22.13212 -20.82049 -19.97849 -19.40679 -18.58150 -17.81508 -17.40422 -17.04078 -16.82071 -16.56994 -16.06816 -15.93065 -15.61081 -15.03911 -14.84511 -14.32119 -14.16729 -13.75403 -13.70048 -13.31228 -13.13693 -12.96343 -12.87712 -12.72082 -12.56874 -12.26556 -12.06646 -11.98713 -11.83795 -11.71988 -11.33269 -11.24691 -10.90983 -10.85218 -10.65388 -10.13677 -9.74306 -8.84768 -7.80173 -5.15247 -0.76711 -0.41305 0.27664 0.62774 0.71163 1.48857 1.51893 1.57868 1.74694 2.11419 2.53221 2.97469 3.26054 3.41608 3.56650 3.74431 3.81221 3.99226 4.03647 4.20183 4.28260 4.46351 4.56640 4.60921 4.70091 4.84004 4.84742 4.93568 5.01651 5.16155 5.20421 5.50462 5.67682 5.79441 6.03984 6.22915 6.51711 6.91987 7.14102 7.81773 8.46418 9.30239 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.014265 B = 0.003616 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.351906 B = 7741.036453 C = 9227.427189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.066 4.066 3 Si 0.976 3.024 4 H -0.277 1.277 5 H -0.298 1.298 6 H -0.277 1.277 7 C -0.238 4.238 8 H 0.087 0.913 9 N -0.625 5.625 10 C 0.193 3.807 11 C -0.101 4.101 12 C -0.103 4.103 13 C 0.130 3.870 14 N -0.626 5.626 15 C 0.615 3.385 16 O -0.568 6.568 17 C -0.003 4.003 18 C -0.221 4.221 19 S 0.390 5.610 20 C 0.017 3.983 21 Cl 0.033 6.967 22 N -0.454 5.454 23 C 0.142 3.858 24 C 0.154 3.846 25 H 0.245 0.755 26 H 0.008 0.992 27 H 0.007 0.993 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.114 0.886 32 H 0.215 0.785 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.040 0.960 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.866 -17.899 -14.101 22.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.259 4.259 3 Si 0.804 3.196 4 H -0.203 1.203 5 H -0.224 1.224 6 H -0.203 1.203 7 C -0.367 4.367 8 H 0.105 0.895 9 N -0.352 5.352 10 C 0.067 3.933 11 C -0.139 4.139 12 C -0.105 4.105 13 C 0.008 3.992 14 N -0.358 5.358 15 C 0.403 3.597 16 O -0.449 6.449 17 C -0.138 4.138 18 C -0.364 4.364 19 S 0.642 5.358 20 C -0.287 4.287 21 Cl 0.061 6.939 22 N -0.173 5.173 23 C 0.019 3.981 24 C 0.028 3.972 25 H 0.054 0.946 26 H 0.026 0.974 27 H 0.025 0.975 28 H 0.081 0.919 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.132 0.868 32 H 0.232 0.768 33 H 0.113 0.887 34 H 0.090 0.910 35 H 0.058 0.942 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.321 -18.139 -14.687 23.574 hybrid contribution 0.579 1.552 0.995 1.932 sum -2.743 -16.587 -13.692 21.682 Atomic orbital electron populations 1.70192 1.06355 1.25134 1.58563 1.25615 0.96496 1.00949 1.02843 0.85189 0.77115 0.79006 0.78250 1.20275 1.22427 1.20266 1.19448 0.91121 0.83564 1.42582 0.89548 1.44810 1.02112 1.01131 1.87108 1.20875 0.84036 0.90836 0.97509 1.22249 0.95423 0.95556 1.00699 1.22013 0.97682 0.94496 0.96285 1.22880 1.00123 0.91987 0.84161 1.49561 1.53263 1.15841 1.17151 1.16730 0.77679 0.81622 0.83669 1.90785 1.59896 1.26566 1.67666 1.19926 1.06880 0.90367 0.96595 1.27185 1.02498 1.06711 1.00052 1.82556 1.46071 1.00348 1.06791 1.27524 1.07055 0.99325 0.94772 1.98456 1.96594 1.42337 1.56556 1.66718 1.20112 1.24848 1.05574 1.22691 1.00360 0.79226 0.95789 1.21287 0.94042 0.83608 0.98220 0.94616 0.97399 0.97524 0.91945 0.90342 0.89470 0.86843 0.76798 0.88665 0.91024 0.94225 0.92736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.82 10.30 21.65 0.22 -57.60 16 2 C -0.07 -3.77 5.49 84.86 0.47 -3.30 16 3 Si 0.98 45.72 29.55 68.60 2.03 47.75 16 4 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 5 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.24 -13.15 10.28 84.03 0.86 -12.28 16 8 H 0.09 4.49 7.83 -2.91 -0.02 4.47 16 9 N -0.63 -31.46 3.41 -693.47 -2.36 -33.83 16 10 C 0.19 9.60 5.39 86.81 0.47 10.07 16 11 C -0.10 -3.80 6.39 31.32 0.20 -3.60 16 12 C -0.10 -3.39 1.05 -52.71 -0.06 -3.45 16 13 C 0.13 3.53 8.03 83.67 0.67 4.21 16 14 N -0.63 -19.11 3.70 -864.52 -3.20 -22.31 16 15 C 0.61 19.30 8.05 86.61 0.70 20.00 16 16 O -0.57 -19.87 17.48 -4.17 -0.07 -19.95 16 17 C 0.00 -0.07 6.69 40.52 0.27 0.20 16 18 C -0.22 -4.01 10.61 67.11 0.71 -3.30 16 19 S 0.39 4.87 22.96 -56.49 -1.30 3.57 16 20 C 0.02 0.35 7.98 130.69 1.04 1.39 16 21 Cl 0.03 0.67 29.33 -2.72 -0.08 0.59 16 22 N -0.45 -12.39 8.78 -183.79 -1.61 -14.01 16 23 C 0.14 4.52 6.93 83.68 0.58 5.10 16 24 C 0.15 5.83 6.71 86.22 0.58 6.41 16 25 H 0.24 14.55 8.31 -92.71 -0.77 13.78 16 26 H 0.01 0.44 7.38 -2.38 -0.02 0.42 16 27 H 0.01 0.37 7.49 -2.39 -0.02 0.35 16 28 H 0.06 2.31 8.07 -2.38 -0.02 2.29 16 29 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 30 H 0.09 2.28 8.13 -2.39 -0.02 2.26 16 31 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.22 3.02 8.03 -2.91 -0.02 3.00 16 33 H 0.10 2.83 8.07 -2.39 -0.02 2.81 16 34 H 0.07 2.59 7.35 -2.39 -0.02 2.58 16 35 H 0.04 1.43 8.14 -2.38 -0.02 1.42 16 36 H 0.05 1.95 8.01 -2.39 -0.02 1.93 16 Total: -1.00 -72.04 333.54 1.24 -70.80 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: 1.12 Total: 3.53 kcal Atomic # 6 Polarization: 14.94 SS G_CDS: 6.50 Total: 21.44 kcal Atomic # 7 Polarization: -120.78 SS G_CDS: -6.95 Total: -127.74 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.07 Total: -19.95 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Atomic # 16 Polarization: 4.87 SS G_CDS: -1.30 Total: 3.57 kcal Atomic # 17 Polarization: 0.67 SS G_CDS: -0.08 Total: 0.59 kcal Total: -72.04 1.24 -70.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073105858.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.981 kcal (2) G-P(sol) polarization free energy of solvation -72.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds