Wall clock time and date at job start Tue Mar 31 2020 15:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86805 * 119.99901 * 2 1 4 4 H 1.48503 * 109.47138 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47149 * 300.00545 * 3 2 1 6 6 H 1.48504 * 109.46805 * 60.00530 * 3 2 1 7 7 C 1.38812 * 120.00246 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99846 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99936 * 359.97438 * 7 2 1 10 10 C 1.47153 * 125.57829 * 0.02903 * 9 7 2 11 11 C 1.54631 * 107.37469 * 179.04483 * 10 9 7 12 12 C 1.53520 * 102.70591 * 339.38057 * 11 10 9 13 13 C 1.51777 * 117.00233 * 164.16340 * 12 11 10 14 14 N 1.47394 * 87.51644 * 92.93236 * 13 12 11 15 15 C 1.34777 * 135.85484 * 205.66801 * 14 13 12 16 16 O 1.21704 * 120.00041 * 359.97438 * 15 14 13 17 17 C 1.46526 * 119.99883 * 179.97438 * 15 14 13 18 18 S 1.76208 * 126.17853 * 359.68148 * 17 15 14 19 19 C 1.70919 * 90.38988 * 179.97438 * 18 17 15 20 20 N 1.29353 * 110.62008 * 0.30235 * 19 18 17 21 21 C 1.31047 * 117.45780 * 359.76145 * 20 19 18 22 22 Cl 1.73597 * 123.05930 * 179.97438 * 21 20 19 23 23 C 1.47389 * 88.29212 * 25.92029 * 14 13 12 24 24 C 1.47756 * 125.58189 * 179.97438 * 9 7 2 25 25 H 0.96998 * 119.99915 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.86838 * 59.59453 * 10 9 7 27 27 H 1.08999 * 109.86451 * 298.48695 * 10 9 7 28 28 H 1.08998 * 110.76147 * 221.08511 * 11 10 9 29 29 H 1.08994 * 110.76909 * 97.69048 * 11 10 9 30 30 H 1.08998 * 113.54456 * 338.27905 * 13 12 11 31 31 H 1.09001 * 113.60989 * 207.59827 * 13 12 11 32 32 H 1.08001 * 124.68887 * 180.02562 * 19 18 17 33 33 H 1.08995 * 113.54610 * 88.74366 * 23 14 13 34 34 H 1.09000 * 113.54594 * 219.42150 * 23 14 13 35 35 H 1.09002 * 110.40631 * 83.55127 * 24 9 7 36 36 H 1.09002 * 110.40405 * 321.12417 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1388 -2.5311 -0.0006 11 6 -0.4549 -4.0446 -0.0252 12 6 0.8473 -4.6528 -0.5648 13 6 1.0381 -6.1472 -0.3804 14 7 0.4464 -6.3230 -1.7188 15 6 -0.2200 -7.3032 -2.3604 16 8 -0.4497 -8.3552 -1.7931 17 6 -0.6678 -7.1024 -3.7410 18 16 -0.4316 -5.6499 -4.7103 19 6 -1.2441 -6.3807 -6.0245 20 7 -1.6324 -7.5746 -5.7130 21 6 -1.3503 -8.0067 -4.5084 22 17 -1.8020 -9.5828 -3.9379 23 6 0.9059 -4.9629 -2.0523 24 6 1.9366 -3.7334 -0.0016 25 1 -0.4850 0.8400 0.0004 26 1 -0.5579 -2.0508 -0.8847 27 1 -0.5551 -2.0805 0.9004 28 1 -1.2869 -4.2546 -0.6972 29 1 -0.6659 -4.4117 0.9792 30 1 0.4322 -6.5677 0.4222 31 1 2.0837 -6.4500 -0.3234 32 1 -1.4140 -5.9090 -6.9811 33 1 1.9147 -4.9329 -2.4639 34 1 0.1897 -4.3946 -2.6458 35 1 2.1990 -4.0325 1.0132 36 1 2.8174 -3.7503 -0.6435 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073433836.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:33 Heat of formation + Delta-G solvation = 86.217126 kcal Electronic energy + Delta-G solvation = -23068.006622 eV Core-core repulsion = 19514.857479 eV Total energy + Delta-G solvation = -3553.149143 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.055 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -40.85164 -40.04888 -38.17417 -36.71289 -35.75769 -32.35570 -31.12561 -29.51051 -28.76506 -26.61093 -26.21555 -25.53412 -23.81752 -21.50780 -20.37141 -20.05326 -18.74825 -18.34828 -16.92245 -16.83415 -16.38646 -15.92089 -15.18973 -14.99282 -14.91033 -14.67838 -14.35058 -13.89135 -13.63173 -13.13220 -12.68628 -12.41818 -12.30814 -12.01645 -11.95901 -11.89356 -11.20828 -11.10553 -10.98535 -10.81780 -10.56716 -10.38099 -10.20417 -10.11061 -9.94104 -9.89086 -9.83495 -9.68701 -9.18715 -8.68477 -8.67049 -6.91637 -5.78304 -3.12327 -0.17871 0.65192 1.07542 1.91922 2.02318 2.63610 2.97906 3.35071 3.41112 3.43374 4.00336 4.29994 4.42859 4.53385 4.55899 4.84208 5.10955 5.18326 5.38019 5.43050 5.49936 5.57172 5.67334 5.69251 5.74953 6.04459 6.14369 6.37014 6.42072 6.56057 6.61435 6.99591 7.48642 7.53369 7.59510 7.75414 7.97926 8.17185 9.14293 9.74282 10.39218 11.33220 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.022156 B = 0.003241 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.442837 B = 8636.786007 C = 9401.850130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.229 4.229 8 H 0.079 0.921 9 N -0.605 5.605 10 C 0.179 3.821 11 C -0.118 4.118 12 C -0.102 4.102 13 C 0.125 3.875 14 N -0.640 5.640 15 C 0.618 3.382 16 O -0.516 6.516 17 C -0.277 4.277 18 S 0.240 5.760 19 C 0.025 3.975 20 N -0.472 5.472 21 C 0.176 3.824 22 Cl 0.026 6.974 23 C 0.111 3.889 24 C 0.154 3.846 25 H 0.252 0.748 26 H 0.047 0.953 27 H 0.045 0.955 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.213 0.787 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.029 0.971 36 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.738 -12.448 -9.811 15.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.357 4.357 8 H 0.097 0.903 9 N -0.331 5.331 10 C 0.055 3.945 11 C -0.156 4.156 12 C -0.104 4.104 13 C 0.003 3.997 14 N -0.375 5.375 15 C 0.406 3.594 16 O -0.393 6.393 17 C -0.403 4.403 18 S 0.495 5.505 19 C -0.269 4.269 20 N -0.187 5.187 21 C 0.010 3.990 22 Cl 0.054 6.946 23 C -0.012 4.012 24 C 0.027 3.973 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.229 0.771 33 H 0.112 0.888 34 H 0.100 0.900 35 H 0.047 0.953 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.898 -12.384 -9.877 15.865 hybrid contribution 0.051 -0.013 0.043 0.068 sum -0.848 -12.396 -9.834 15.846 Atomic orbital electron populations 1.69966 1.04877 1.24987 1.56999 1.24795 0.95701 0.97666 1.02156 0.86063 0.78733 0.83790 0.77259 1.20493 1.21771 1.21772 1.19085 0.90472 0.82255 1.43882 0.90298 1.44551 1.01565 0.99662 1.87355 1.21233 0.84278 0.87718 1.01306 1.22496 0.94017 0.99302 0.99831 1.22172 1.00363 0.93525 0.94322 1.22813 0.98565 0.94193 0.84099 1.49669 1.54497 1.15872 1.17436 1.15924 0.78430 0.82460 0.82623 1.90882 1.57201 1.25012 1.66209 1.25695 1.13607 0.99339 1.01669 1.84549 1.49593 1.13112 1.03292 1.28721 0.99920 0.93084 1.05183 1.65698 1.22334 1.14166 1.16466 1.21091 0.97561 0.91364 0.89027 1.98437 1.90576 1.19174 1.86391 1.23087 1.00197 0.79708 0.98202 1.21141 0.93061 0.85687 0.97399 0.93764 0.93444 0.93699 0.92119 0.91544 0.89949 0.89307 0.77062 0.88799 0.90022 0.95345 0.93809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.63 10.30 55.49 0.57 -25.06 16 2 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 3 Si 0.91 21.01 29.55 -169.99 -5.02 15.99 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.23 -5.92 10.28 -15.06 -0.15 -6.07 16 8 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.60 -14.00 3.41 -170.53 -0.58 -14.58 16 10 C 0.18 3.99 5.39 -2.83 -0.02 3.97 16 11 C -0.12 -2.01 6.41 -25.60 -0.16 -2.17 16 12 C -0.10 -1.53 1.06 -155.22 -0.16 -1.70 16 13 C 0.13 1.64 8.03 -7.48 -0.06 1.58 16 14 N -0.64 -8.95 3.70 -187.36 -0.69 -9.64 16 15 C 0.62 9.49 8.03 -12.92 -0.10 9.39 16 16 O -0.52 -9.19 15.94 5.19 0.08 -9.11 16 17 C -0.28 -3.73 6.51 -36.75 -0.24 -3.97 16 18 S 0.24 2.36 20.13 -107.50 -2.16 0.19 16 19 C 0.03 0.22 12.20 51.72 0.63 0.86 16 20 N -0.47 -5.77 10.50 -12.22 -0.13 -5.90 16 21 C 0.18 2.41 7.41 -18.39 -0.14 2.27 16 22 Cl 0.03 0.36 27.38 -51.86 -1.42 -1.06 16 23 C 0.11 1.48 6.61 -7.33 -0.05 1.43 16 24 C 0.15 2.74 6.70 -3.22 -0.02 2.71 16 25 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 26 H 0.05 1.17 7.38 -51.93 -0.38 0.79 16 27 H 0.04 1.13 7.49 -51.93 -0.39 0.74 16 28 H 0.06 0.99 8.07 -51.93 -0.42 0.57 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.08 1.08 8.13 -51.93 -0.42 0.66 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.21 0.97 8.06 -52.49 -0.42 0.55 16 33 H 0.09 1.11 8.06 -51.93 -0.42 0.69 16 34 H 0.08 1.09 6.48 -51.93 -0.34 0.76 16 35 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.04 0.73 8.00 -51.93 -0.42 0.32 16 LS Contribution 328.60 15.07 4.95 4.95 Total: -1.00 -31.37 328.60 -9.00 -40.37 By element: Atomic # 1 Polarization: -0.15 SS G_CDS: -4.02 Total: -4.17 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: -0.57 Total: 8.02 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: -0.83 Total: -55.18 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.08 Total: -9.11 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 2.36 SS G_CDS: -2.16 Total: 0.19 kcal Atomic # 17 Polarization: 0.36 SS G_CDS: -1.42 Total: -1.06 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.37 -9.00 -40.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073433836.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.588 kcal (2) G-P(sol) polarization free energy of solvation -31.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds