Wall clock time and date at job start Tue Mar 31 2020 15:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86805 * 119.99901 * 2 1 4 4 H 1.48503 * 109.47138 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47149 * 300.00545 * 3 2 1 6 6 H 1.48504 * 109.46805 * 60.00530 * 3 2 1 7 7 C 1.38812 * 120.00246 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99846 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99936 * 359.97438 * 7 2 1 10 10 C 1.47153 * 125.57829 * 0.02903 * 9 7 2 11 11 C 1.54631 * 107.37469 * 179.04483 * 10 9 7 12 12 C 1.53520 * 102.70591 * 339.38057 * 11 10 9 13 13 C 1.51777 * 117.00233 * 164.16340 * 12 11 10 14 14 N 1.47394 * 87.51644 * 92.93236 * 13 12 11 15 15 C 1.34777 * 135.85484 * 205.66801 * 14 13 12 16 16 O 1.21704 * 120.00041 * 359.97438 * 15 14 13 17 17 C 1.46526 * 119.99883 * 179.97438 * 15 14 13 18 18 S 1.76208 * 126.17853 * 359.68148 * 17 15 14 19 19 C 1.70919 * 90.38988 * 179.97438 * 18 17 15 20 20 N 1.29353 * 110.62008 * 0.30235 * 19 18 17 21 21 C 1.31047 * 117.45780 * 359.76145 * 20 19 18 22 22 Cl 1.73597 * 123.05930 * 179.97438 * 21 20 19 23 23 C 1.47389 * 88.29212 * 25.92029 * 14 13 12 24 24 C 1.47756 * 125.58189 * 179.97438 * 9 7 2 25 25 H 0.96998 * 119.99915 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.86838 * 59.59453 * 10 9 7 27 27 H 1.08999 * 109.86451 * 298.48695 * 10 9 7 28 28 H 1.08998 * 110.76147 * 221.08511 * 11 10 9 29 29 H 1.08994 * 110.76909 * 97.69048 * 11 10 9 30 30 H 1.08998 * 113.54456 * 338.27905 * 13 12 11 31 31 H 1.09001 * 113.60989 * 207.59827 * 13 12 11 32 32 H 1.08001 * 124.68887 * 180.02562 * 19 18 17 33 33 H 1.08995 * 113.54610 * 88.74366 * 23 14 13 34 34 H 1.09000 * 113.54594 * 219.42150 * 23 14 13 35 35 H 1.09002 * 110.40631 * 83.55127 * 24 9 7 36 36 H 1.09002 * 110.40405 * 321.12417 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1388 -2.5311 -0.0006 11 6 -0.4549 -4.0446 -0.0252 12 6 0.8473 -4.6528 -0.5648 13 6 1.0381 -6.1472 -0.3804 14 7 0.4464 -6.3230 -1.7188 15 6 -0.2200 -7.3032 -2.3604 16 8 -0.4497 -8.3552 -1.7931 17 6 -0.6678 -7.1024 -3.7410 18 16 -0.4316 -5.6499 -4.7103 19 6 -1.2441 -6.3807 -6.0245 20 7 -1.6324 -7.5746 -5.7130 21 6 -1.3503 -8.0067 -4.5084 22 17 -1.8020 -9.5828 -3.9379 23 6 0.9059 -4.9629 -2.0523 24 6 1.9366 -3.7334 -0.0016 25 1 -0.4850 0.8400 0.0004 26 1 -0.5579 -2.0508 -0.8847 27 1 -0.5551 -2.0805 0.9004 28 1 -1.2869 -4.2546 -0.6972 29 1 -0.6659 -4.4117 0.9792 30 1 0.4322 -6.5677 0.4222 31 1 2.0837 -6.4500 -0.3234 32 1 -1.4140 -5.9090 -6.9811 33 1 1.9147 -4.9329 -2.4639 34 1 0.1897 -4.3946 -2.6458 35 1 2.1990 -4.0325 1.0132 36 1 2.8174 -3.7503 -0.6435 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073433836.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:30 Heat of formation + Delta-G solvation = 65.593996 kcal Electronic energy + Delta-G solvation = -23068.900908 eV Core-core repulsion = 19514.857479 eV Total energy + Delta-G solvation = -3554.043429 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.055 amu Computer time = 2.79 seconds Orbital eigenvalues (eV) -42.01720 -40.98259 -39.38508 -37.70709 -37.30159 -34.10063 -32.24457 -31.04249 -30.14569 -27.80562 -27.28930 -26.81079 -25.41805 -22.54143 -22.08559 -20.99399 -19.96200 -19.43133 -18.58950 -17.88247 -17.55152 -17.01446 -16.72861 -16.22787 -15.99542 -15.82701 -15.57946 -15.39129 -14.84348 -14.28110 -14.15143 -13.74437 -13.69851 -13.40571 -13.21080 -12.91121 -12.82534 -12.77744 -12.29669 -12.18471 -11.95189 -11.93195 -11.81344 -11.69037 -11.36462 -11.09300 -10.87339 -10.81315 -10.64425 -10.09675 -9.75451 -8.81633 -7.77945 -5.12302 -1.05157 -0.22315 0.28147 0.98866 1.12687 1.51852 1.52971 1.56733 1.62417 1.89634 2.55296 3.07317 3.27913 3.43384 3.50138 3.59576 3.67397 3.81195 4.03640 4.21693 4.37879 4.46935 4.48559 4.61864 4.64748 4.70407 4.85858 4.94068 5.04314 5.17567 5.22291 5.55245 5.71199 5.84006 6.15766 6.25997 6.48936 6.86774 7.17433 7.84828 8.48658 9.32547 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.022156 B = 0.003241 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.442837 B = 8636.786007 C = 9401.850130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.066 4.066 3 Si 0.972 3.028 4 H -0.264 1.264 5 H -0.294 1.294 6 H -0.300 1.300 7 C -0.231 4.231 8 H 0.088 0.912 9 N -0.625 5.625 10 C 0.190 3.810 11 C -0.104 4.104 12 C -0.096 4.096 13 C 0.132 3.868 14 N -0.639 5.639 15 C 0.616 3.384 16 O -0.550 6.550 17 C -0.309 4.309 18 S 0.278 5.722 19 C 0.048 3.952 20 N -0.498 5.498 21 C 0.169 3.831 22 Cl 0.011 6.989 23 C 0.115 3.885 24 C 0.152 3.848 25 H 0.244 0.756 26 H 0.016 0.984 27 H 0.003 0.997 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.116 0.884 32 H 0.258 0.742 33 H 0.118 0.882 34 H 0.081 0.919 35 H 0.036 0.964 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.690 -12.700 -11.280 17.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.259 4.259 3 Si 0.801 3.199 4 H -0.188 1.188 5 H -0.222 1.222 6 H -0.227 1.227 7 C -0.360 4.360 8 H 0.105 0.895 9 N -0.351 5.351 10 C 0.065 3.935 11 C -0.143 4.143 12 C -0.098 4.098 13 C 0.010 3.990 14 N -0.373 5.373 15 C 0.405 3.595 16 O -0.430 6.430 17 C -0.435 4.435 18 S 0.533 5.467 19 C -0.245 4.245 20 N -0.213 5.213 21 C 0.002 3.998 22 Cl 0.040 6.960 23 C -0.007 4.007 24 C 0.027 3.973 25 H 0.053 0.947 26 H 0.034 0.966 27 H 0.021 0.979 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.134 0.866 32 H 0.274 0.726 33 H 0.136 0.864 34 H 0.099 0.901 35 H 0.054 0.946 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.573 -12.645 -11.346 16.999 hybrid contribution -0.377 0.108 0.457 0.602 sum 0.196 -12.537 -10.890 16.607 Atomic orbital electron populations 1.70180 1.06232 1.24924 1.58802 1.25555 0.96453 1.00753 1.03093 0.85100 0.78417 0.80002 0.76361 1.18799 1.22155 1.22715 1.19490 0.91116 0.83436 1.42003 0.89460 1.44825 1.02126 1.01107 1.87077 1.20912 0.84027 0.90762 0.97798 1.22286 0.95543 0.95577 1.00845 1.21968 0.97787 0.94304 0.95764 1.22865 1.00134 0.92079 0.83910 1.49635 1.54197 1.15804 1.17700 1.16146 0.78035 0.82110 0.83254 1.90854 1.58524 1.26311 1.67294 1.25613 1.15033 1.01370 1.01499 1.84393 1.48975 1.10852 1.02432 1.29511 0.97106 0.91712 1.06184 1.65748 1.23832 1.15708 1.16009 1.21230 0.97756 0.91052 0.89759 1.98423 1.90693 1.20256 1.86670 1.23167 1.01525 0.79118 0.96922 1.21307 0.94166 0.83485 0.98325 0.94667 0.96624 0.97857 0.91328 0.90753 0.89898 0.86648 0.72650 0.86425 0.90086 0.94591 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 75. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.56 10.30 21.65 0.22 -54.33 16 2 C -0.07 -3.52 5.49 84.86 0.47 -3.05 16 3 Si 0.97 43.35 29.55 68.60 2.03 45.38 16 4 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 5 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 6 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 7 C -0.23 -11.86 10.28 84.03 0.86 -10.99 16 8 H 0.09 4.22 7.83 -2.91 -0.02 4.20 16 9 N -0.62 -28.65 3.41 -693.43 -2.36 -31.01 16 10 C 0.19 8.62 5.39 86.81 0.47 9.09 16 11 C -0.10 -3.47 6.41 31.32 0.20 -3.27 16 12 C -0.10 -2.68 1.06 -52.62 -0.06 -2.74 16 13 C 0.13 3.09 8.03 83.67 0.67 3.76 16 14 N -0.64 -16.44 3.70 -864.90 -3.20 -19.64 16 15 C 0.62 18.14 8.03 86.40 0.69 18.83 16 16 O -0.55 -19.37 15.94 -4.36 -0.07 -19.44 16 17 C -0.31 -7.87 6.51 24.10 0.16 -7.71 16 18 S 0.28 4.69 20.13 -56.49 -1.14 3.55 16 19 C 0.05 0.69 12.20 130.61 1.59 2.29 16 20 N -0.50 -11.17 10.50 -192.57 -2.02 -13.19 16 21 C 0.17 4.46 7.41 84.48 0.63 5.09 16 22 Cl 0.01 0.31 27.38 -2.72 -0.07 0.23 16 23 C 0.12 2.74 6.61 83.76 0.55 3.30 16 24 C 0.15 5.08 6.70 86.23 0.58 5.66 16 25 H 0.24 13.74 8.31 -92.71 -0.77 12.97 16 26 H 0.02 0.79 7.38 -2.39 -0.02 0.78 16 27 H 0.00 0.17 7.49 -2.39 -0.02 0.15 16 28 H 0.07 2.17 8.07 -2.39 -0.02 2.15 16 29 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.08 1.98 8.13 -2.39 -0.02 1.96 16 31 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.26 1.09 8.06 -2.91 -0.02 1.06 16 33 H 0.12 2.31 8.06 -2.39 -0.02 2.29 16 34 H 0.08 1.97 6.48 -2.39 -0.02 1.96 16 35 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.06 1.86 8.00 -2.39 -0.02 1.84 16 Total: -1.00 -70.20 328.60 1.32 -68.88 By element: Atomic # 1 Polarization: -1.79 SS G_CDS: 1.12 Total: -0.67 kcal Atomic # 6 Polarization: 13.43 SS G_CDS: 6.82 Total: 20.25 kcal Atomic # 7 Polarization: -110.82 SS G_CDS: -7.36 Total: -118.18 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.07 Total: -19.44 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 16 Polarization: 4.69 SS G_CDS: -1.14 Total: 3.55 kcal Atomic # 17 Polarization: 0.31 SS G_CDS: -0.07 Total: 0.23 kcal Total: -70.20 1.32 -68.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073433836.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.476 kcal (2) G-P(sol) polarization free energy of solvation -70.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.79 seconds