Wall clock time and date at job start Tue Mar 31 2020 15:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 119.99855 * 2 1 4 4 H 1.48499 * 109.47393 * 270.00092 * 3 2 1 5 5 H 1.48501 * 109.47164 * 29.99804 * 3 2 1 6 6 H 1.48503 * 109.47450 * 149.99688 * 3 2 1 7 7 C 1.38814 * 120.00534 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00102 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99764 * 0.02562 * 7 2 1 10 10 C 1.46698 * 125.32358 * 179.97438 * 9 7 2 11 11 C 1.54040 * 106.83130 * 161.84265 * 10 9 7 12 12 H 1.09004 * 113.42789 * 262.66961 * 11 10 9 13 13 C 1.55126 * 108.26022 * 135.80574 * 11 10 9 14 14 C 1.54845 * 101.77602 * 286.08956 * 13 11 10 15 15 N 1.47402 * 104.81312 * 322.81381 * 14 13 11 16 16 C 1.34778 * 125.59270 * 204.60916 * 15 14 13 17 17 O 1.21631 * 120.00432 * 174.40286 * 16 15 14 18 18 C 1.47154 * 119.99509 * 354.67402 * 16 15 14 19 19 N 1.30569 * 125.52311 * 173.32792 * 18 16 15 20 20 C 1.30668 * 115.92942 * 180.02562 * 19 18 16 21 21 C 1.34440 * 115.73777 * 0.02562 * 20 19 18 22 22 Cl 1.73600 * 125.45850 * 180.02562 * 21 20 19 23 23 S 1.71068 * 109.07339 * 359.72362 * 21 20 19 24 24 C 1.46734 * 108.81819 * 24.87387 * 15 14 13 25 25 H 1.09006 * 111.32678 * 235.85762 * 24 15 14 26 26 C 1.46636 * 125.32228 * 0.02562 * 9 7 2 27 27 H 0.97003 * 120.00528 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.99073 * 42.49540 * 10 9 7 29 29 H 1.09010 * 109.98656 * 281.18456 * 10 9 7 30 30 H 1.09004 * 110.96442 * 167.96691 * 13 11 10 31 31 H 1.08997 * 110.99999 * 44.22718 * 13 11 10 32 32 H 1.09008 * 110.36993 * 203.98827 * 14 13 11 33 33 H 1.08997 * 110.37308 * 81.64699 * 14 13 11 34 34 H 1.07994 * 122.12521 * 179.97438 * 20 19 18 35 35 H 1.08995 * 109.75604 * 300.91224 * 26 9 7 36 36 H 1.09002 * 109.75607 * 61.60597 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 1.9382 -3.7210 0.0005 11 6 0.8515 -4.7113 0.4600 12 1 0.9095 -4.9571 1.5204 13 6 0.9039 -5.9547 -0.4661 14 6 0.2761 -5.4041 -1.7701 15 7 -0.7925 -4.4945 -1.3191 16 6 -1.8847 -4.1534 -2.0313 17 8 -2.7551 -3.4735 -1.5218 18 6 -2.0269 -4.6085 -3.4234 19 7 -3.0864 -4.4483 -4.1695 20 6 -3.0090 -4.9281 -5.3824 21 6 -1.8471 -5.5245 -5.7013 22 17 -1.4727 -6.2448 -7.2358 23 16 -0.7938 -5.4522 -4.3552 24 6 -0.4690 -4.0163 0.0298 25 1 -1.2760 -4.2304 0.7305 26 6 -0.1343 -2.5241 -0.0005 27 1 -0.4851 0.8400 -0.0004 28 1 2.7801 -3.7443 0.6925 29 1 2.2744 -3.9766 -1.0044 30 1 0.3056 -6.7698 -0.0589 31 1 1.9325 -6.2742 -0.6331 32 1 -0.1431 -6.2177 -2.3623 33 1 1.0208 -4.8573 -2.3484 34 1 -3.8267 -4.8513 -6.0837 35 1 -0.5507 -2.0332 0.8790 36 1 -0.5457 -2.0730 -0.9035 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076032240.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:00 Heat of formation + Delta-G solvation = 56.492564 kcal Electronic energy + Delta-G solvation = -23592.791172 eV Core-core repulsion = 20038.353075 eV Total energy + Delta-G solvation = -3554.438097 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.055 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -40.54476 -39.79222 -37.77159 -37.12214 -34.95272 -32.40422 -31.02952 -30.54938 -28.94299 -26.99040 -25.91245 -24.82722 -23.14577 -21.89820 -20.41330 -19.54983 -19.48256 -18.30273 -17.13373 -16.72374 -16.43163 -15.82369 -15.30948 -14.88293 -14.59208 -14.16731 -14.09440 -13.82704 -13.34007 -13.12959 -12.97293 -12.61421 -12.38092 -12.19552 -11.99523 -11.70681 -11.48550 -11.07514 -10.94171 -10.73607 -10.61182 -10.37094 -10.34011 -10.21044 -9.94331 -9.75372 -9.64777 -9.60821 -9.08205 -8.61636 -8.41622 -6.84804 -5.69693 -3.06135 -0.07571 0.52876 1.22807 1.78031 2.17951 2.78414 3.26207 3.40671 3.45099 3.48201 4.09445 4.46423 4.56420 4.59295 4.78121 4.90645 4.95829 5.32498 5.35586 5.45722 5.60595 5.63068 5.64701 5.75807 5.90168 6.05298 6.20087 6.29833 6.41447 6.55798 6.76012 7.21233 7.46131 7.59945 7.67453 7.84399 8.21393 8.27747 9.21195 9.82341 10.44563 11.40468 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.015262 B = 0.003887 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.131339 B = 7201.170589 C = 7737.120960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.004 4.004 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.236 4.236 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.140 3.860 11 C -0.109 4.109 12 H 0.104 0.896 13 C -0.117 4.117 14 C 0.083 3.917 15 N -0.594 5.594 16 C 0.605 3.395 17 O -0.484 6.484 18 C 0.020 3.980 19 N -0.394 5.394 20 C 0.047 3.953 21 C -0.225 4.225 22 Cl 0.006 6.994 23 S 0.241 5.759 24 C 0.119 3.881 25 H 0.087 0.913 26 C 0.173 3.827 27 H 0.254 0.746 28 H 0.037 0.963 29 H 0.018 0.982 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.184 0.816 35 H 0.058 0.942 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.032 -17.682 -8.908 19.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.201 4.201 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.364 4.364 8 H 0.097 0.903 9 N -0.329 5.329 10 C 0.014 3.986 11 C -0.129 4.129 12 H 0.122 0.878 13 C -0.155 4.155 14 C -0.042 4.042 15 N -0.329 5.329 16 C 0.387 3.613 17 O -0.357 6.357 18 C -0.256 4.256 19 N -0.109 5.109 20 C -0.112 4.112 21 C -0.375 4.375 22 Cl 0.034 6.966 23 S 0.496 5.504 24 C 0.017 3.983 25 H 0.105 0.895 26 C 0.048 3.952 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.036 0.964 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.201 0.799 35 H 0.076 0.924 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.056 -17.150 -8.366 19.082 hybrid contribution -0.292 0.906 -1.212 1.541 sum -0.348 -16.244 -9.578 18.860 Atomic orbital electron populations 1.69964 1.04812 1.25272 1.56166 1.24836 0.95675 0.97744 1.01877 0.86143 0.78563 0.83600 0.77554 1.21636 1.21619 1.20655 1.18999 0.90374 0.82237 1.44813 0.90346 1.44210 1.01292 0.99999 1.87366 1.21328 0.93985 0.85882 0.97402 1.23195 0.95541 0.94453 0.99703 0.87751 1.22712 1.01446 0.97574 0.93770 1.22583 0.90703 0.92659 0.98236 1.48187 1.20556 1.46297 1.17898 1.16065 0.82048 0.81117 0.82035 1.90908 1.39496 1.36608 1.68667 1.27710 0.92782 1.04969 1.00161 1.66780 1.24978 1.15978 1.03207 1.21908 0.97624 0.98209 0.93447 1.26981 1.02423 1.10921 0.97129 1.98377 1.93822 1.80826 1.23581 1.84420 1.16264 1.49707 0.99976 1.22631 0.96406 0.98296 0.80994 0.89537 1.21185 0.84591 0.87015 1.02451 0.93525 0.94444 0.96412 0.90509 0.89314 0.90930 0.89935 0.79870 0.92380 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.44 10.24 55.49 0.57 -26.87 16 2 C 0.00 -0.12 5.48 -17.43 -0.10 -0.22 16 3 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.24 -6.46 10.25 -15.06 -0.15 -6.61 16 8 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 9 N -0.60 -14.83 3.38 -172.35 -0.58 -15.41 16 10 C 0.14 2.61 6.45 -3.39 -0.02 2.58 16 11 C -0.11 -1.62 4.35 -87.74 -0.38 -2.00 16 12 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 13 C -0.12 -1.25 6.35 -24.63 -0.16 -1.41 16 14 C 0.08 1.03 4.82 -2.58 -0.01 1.02 16 15 N -0.59 -10.05 2.99 -164.08 -0.49 -10.54 16 16 C 0.60 11.51 7.31 -12.64 -0.09 11.41 16 17 O -0.48 -11.22 17.24 5.25 0.09 -11.13 16 18 C 0.02 0.32 7.33 -14.47 -0.11 0.21 16 19 N -0.39 -6.40 10.59 -11.50 -0.12 -6.52 16 20 C 0.05 0.59 11.21 -19.39 -0.22 0.37 16 21 C -0.23 -2.56 6.95 29.39 0.20 -2.35 16 22 Cl 0.01 0.05 29.30 -51.86 -1.52 -1.47 16 23 S 0.24 2.80 18.84 -107.50 -2.03 0.77 16 24 C 0.12 2.19 3.53 -66.61 -0.24 1.96 16 25 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 26 C 0.17 4.22 4.98 -3.99 -0.02 4.20 16 27 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.02 0.33 6.52 -51.92 -0.34 -0.01 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.09 0.77 8.08 -51.93 -0.42 0.35 16 32 H 0.07 0.73 5.74 -39.14 -0.22 0.51 16 33 H 0.08 1.07 7.01 -51.93 -0.36 0.71 16 34 H 0.18 1.78 8.06 -52.49 -0.42 1.36 16 35 H 0.06 1.60 7.33 -51.93 -0.38 1.22 16 36 H 0.05 1.52 6.82 -51.93 -0.35 1.17 16 LS Contribution 320.72 15.07 4.83 4.83 Total: -1.00 -33.61 320.72 -9.30 -42.91 By element: Atomic # 1 Polarization: 0.85 SS G_CDS: -3.74 Total: -2.89 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: -1.29 Total: 9.17 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: -0.63 Total: -59.34 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.09 Total: -11.13 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Atomic # 16 Polarization: 2.80 SS G_CDS: -2.03 Total: 0.77 kcal Atomic # 17 Polarization: 0.05 SS G_CDS: -1.52 Total: -1.47 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.61 -9.30 -42.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076032240.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.401 kcal (2) G-P(sol) polarization free energy of solvation -33.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds