Wall clock time and date at job start Tue Mar 31 2020 15:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 119.99855 * 2 1 4 4 H 1.48499 * 109.47393 * 270.00092 * 3 2 1 5 5 H 1.48501 * 109.47164 * 29.99804 * 3 2 1 6 6 H 1.48503 * 109.47450 * 149.99688 * 3 2 1 7 7 C 1.38814 * 120.00534 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00102 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99764 * 0.02562 * 7 2 1 10 10 C 1.46698 * 125.32358 * 179.97438 * 9 7 2 11 11 C 1.54040 * 106.83130 * 161.84265 * 10 9 7 12 12 H 1.09004 * 113.42789 * 262.66961 * 11 10 9 13 13 C 1.55126 * 108.26022 * 135.80574 * 11 10 9 14 14 C 1.54845 * 101.77602 * 286.08956 * 13 11 10 15 15 N 1.47402 * 104.81312 * 322.81381 * 14 13 11 16 16 C 1.34778 * 125.59270 * 204.60916 * 15 14 13 17 17 O 1.21631 * 120.00432 * 174.40286 * 16 15 14 18 18 C 1.47154 * 119.99509 * 354.67402 * 16 15 14 19 19 N 1.30569 * 125.52311 * 173.32792 * 18 16 15 20 20 C 1.30668 * 115.92942 * 180.02562 * 19 18 16 21 21 C 1.34440 * 115.73777 * 0.02562 * 20 19 18 22 22 Cl 1.73600 * 125.45850 * 180.02562 * 21 20 19 23 23 S 1.71068 * 109.07339 * 359.72362 * 21 20 19 24 24 C 1.46734 * 108.81819 * 24.87387 * 15 14 13 25 25 H 1.09006 * 111.32678 * 235.85762 * 24 15 14 26 26 C 1.46636 * 125.32228 * 0.02562 * 9 7 2 27 27 H 0.97003 * 120.00528 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.99073 * 42.49540 * 10 9 7 29 29 H 1.09010 * 109.98656 * 281.18456 * 10 9 7 30 30 H 1.09004 * 110.96442 * 167.96691 * 13 11 10 31 31 H 1.08997 * 110.99999 * 44.22718 * 13 11 10 32 32 H 1.09008 * 110.36993 * 203.98827 * 14 13 11 33 33 H 1.08997 * 110.37308 * 81.64699 * 14 13 11 34 34 H 1.07994 * 122.12521 * 179.97438 * 20 19 18 35 35 H 1.08995 * 109.75604 * 300.91224 * 26 9 7 36 36 H 1.09002 * 109.75607 * 61.60597 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 1.9382 -3.7210 0.0005 11 6 0.8515 -4.7113 0.4600 12 1 0.9095 -4.9571 1.5204 13 6 0.9039 -5.9547 -0.4661 14 6 0.2761 -5.4041 -1.7701 15 7 -0.7925 -4.4945 -1.3191 16 6 -1.8847 -4.1534 -2.0313 17 8 -2.7551 -3.4735 -1.5218 18 6 -2.0269 -4.6085 -3.4234 19 7 -3.0864 -4.4483 -4.1695 20 6 -3.0090 -4.9281 -5.3824 21 6 -1.8471 -5.5245 -5.7013 22 17 -1.4727 -6.2448 -7.2358 23 16 -0.7938 -5.4522 -4.3552 24 6 -0.4690 -4.0163 0.0298 25 1 -1.2760 -4.2304 0.7305 26 6 -0.1343 -2.5241 -0.0005 27 1 -0.4851 0.8400 -0.0004 28 1 2.7801 -3.7443 0.6925 29 1 2.2744 -3.9766 -1.0044 30 1 0.3056 -6.7698 -0.0589 31 1 1.9325 -6.2742 -0.6331 32 1 -0.1431 -6.2177 -2.3623 33 1 1.0208 -4.8573 -2.3484 34 1 -3.8267 -4.8513 -6.0837 35 1 -0.5507 -2.0332 0.8790 36 1 -0.5457 -2.0730 -0.9035 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076032240.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:58 Heat of formation + Delta-G solvation = 32.260996 kcal Electronic energy + Delta-G solvation = -23593.841931 eV Core-core repulsion = 20038.353075 eV Total energy + Delta-G solvation = -3555.488857 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.055 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.86604 -40.92737 -39.21080 -38.01616 -36.63840 -34.09752 -32.56925 -31.73983 -30.49357 -28.37797 -27.21843 -26.63267 -24.35259 -23.22446 -22.00689 -20.85766 -20.57210 -19.58115 -18.85109 -18.15722 -17.64844 -17.06942 -16.81154 -16.36121 -15.96122 -15.59915 -15.40735 -15.16345 -14.72112 -14.55320 -14.29592 -13.98746 -13.69230 -13.38524 -13.26402 -13.01603 -12.94958 -12.85929 -12.57345 -12.19618 -12.05539 -11.84765 -11.80461 -11.65788 -11.57886 -11.43874 -10.88718 -10.72859 -10.62846 -10.10380 -9.80563 -8.88787 -7.83522 -5.21305 -1.15868 -0.48076 0.20638 0.83941 1.05923 1.43873 1.46050 1.52799 1.55260 1.96948 2.49132 2.99674 3.34091 3.48557 3.49559 3.61890 3.77428 3.89606 3.97997 4.12038 4.36094 4.38706 4.54547 4.68724 4.69651 4.79722 4.88439 5.07017 5.18575 5.23655 5.42692 5.46581 5.57334 5.76103 6.14311 6.19503 6.37280 6.84677 7.08838 7.80257 8.41272 9.25238 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.015262 B = 0.003887 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.131339 B = 7201.170589 C = 7737.120960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.071 4.071 3 Si 0.977 3.023 4 H -0.289 1.289 5 H -0.300 1.300 6 H -0.260 1.260 7 C -0.238 4.238 8 H 0.092 0.908 9 N -0.623 5.623 10 C 0.131 3.869 11 C -0.094 4.094 12 H 0.128 0.872 13 C -0.098 4.098 14 C 0.070 3.930 15 N -0.592 5.592 16 C 0.596 3.404 17 O -0.551 6.551 18 C -0.032 4.032 19 N -0.427 5.427 20 C 0.036 3.964 21 C -0.218 4.218 22 Cl 0.034 6.966 23 S 0.329 5.671 24 C 0.121 3.879 25 H 0.084 0.916 26 C 0.191 3.809 27 H 0.242 0.758 28 H 0.050 0.950 29 H 0.036 0.964 30 H 0.106 0.894 31 H 0.126 0.874 32 H 0.103 0.897 33 H 0.082 0.918 34 H 0.207 0.793 35 H 0.007 0.993 36 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.857 -21.199 -10.396 23.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.264 4.264 3 Si 0.805 3.195 4 H -0.216 1.216 5 H -0.227 1.227 6 H -0.184 1.184 7 C -0.367 4.367 8 H 0.110 0.890 9 N -0.350 5.350 10 C 0.007 3.993 11 C -0.113 4.113 12 H 0.146 0.854 13 C -0.135 4.135 14 C -0.052 4.052 15 N -0.326 5.326 16 C 0.381 3.619 17 O -0.428 6.428 18 C -0.305 4.305 19 N -0.144 5.144 20 C -0.123 4.123 21 C -0.368 4.368 22 Cl 0.062 6.938 23 S 0.584 5.416 24 C 0.017 3.983 25 H 0.102 0.898 26 C 0.065 3.935 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.124 0.876 31 H 0.144 0.856 32 H 0.120 0.880 33 H 0.100 0.900 34 H 0.224 0.776 35 H 0.025 0.975 36 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges 2.921 -20.743 -9.855 23.150 hybrid contribution -1.100 1.906 -0.906 2.380 sum 1.821 -18.837 -10.761 21.770 Atomic orbital electron populations 1.70269 1.06640 1.24977 1.58478 1.25724 0.96369 1.01417 1.02856 0.85099 0.77883 0.79178 0.77326 1.21637 1.22721 1.18409 1.19504 0.91193 0.83496 1.42498 0.89017 1.44522 1.01577 1.01850 1.87017 1.21664 0.95282 0.83677 0.98673 1.23210 0.90913 0.95207 1.02007 0.85400 1.22804 1.04065 0.95881 0.90791 1.22991 0.89565 0.92628 1.00048 1.48216 1.20896 1.46283 1.17192 1.16624 0.81738 0.80172 0.83346 1.90846 1.41891 1.39531 1.70547 1.27086 0.95301 1.08556 0.99577 1.66737 1.26278 1.16693 1.04686 1.22213 0.98955 0.98381 0.92730 1.27218 1.01981 1.09371 0.98213 1.98400 1.93545 1.80126 1.21737 1.83884 1.13082 1.46601 0.98065 1.22370 0.98588 0.94822 0.82480 0.89776 1.20696 0.84597 0.90707 0.97545 0.94886 0.93153 0.94662 0.87555 0.85587 0.87968 0.90025 0.77604 0.97453 0.98362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.29 10.24 21.65 0.22 -61.06 16 2 C -0.07 -4.16 5.48 84.86 0.47 -3.69 16 3 Si 0.98 46.90 29.55 68.60 2.03 48.93 16 4 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 5 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 6 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 7 C -0.24 -13.21 10.25 84.03 0.86 -12.35 16 8 H 0.09 4.72 7.83 -2.91 -0.02 4.70 16 9 N -0.62 -31.24 3.38 -699.20 -2.36 -33.60 16 10 C 0.13 4.58 6.45 86.69 0.56 5.14 16 11 C -0.09 -2.52 4.35 -8.93 -0.04 -2.56 16 12 H 0.13 2.90 8.14 -2.38 -0.02 2.88 16 13 C -0.10 -1.57 6.35 31.95 0.20 -1.37 16 14 C 0.07 1.52 4.82 86.84 0.42 1.94 16 15 N -0.59 -20.11 2.99 -791.26 -2.37 -22.48 16 16 C 0.60 23.92 7.31 86.58 0.63 24.55 16 17 O -0.55 -27.98 17.24 -4.13 -0.07 -28.05 16 18 C -0.03 -1.04 7.33 87.22 0.64 -0.41 16 19 N -0.43 -14.16 10.59 -190.28 -2.02 -16.17 16 20 C 0.04 0.87 11.21 84.00 0.94 1.81 16 21 C -0.22 -4.39 6.95 66.95 0.47 -3.92 16 22 Cl 0.03 0.51 29.30 -2.72 -0.08 0.43 16 23 S 0.33 6.76 18.84 -56.49 -1.06 5.69 16 24 C 0.12 4.55 3.53 45.72 0.16 4.71 16 25 H 0.08 3.16 8.14 -2.38 -0.02 3.14 16 26 C 0.19 9.94 4.98 86.34 0.43 10.37 16 27 H 0.24 15.37 8.31 -92.71 -0.77 14.60 16 28 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.04 1.14 6.52 -2.38 -0.02 1.12 16 30 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.13 1.26 8.08 -2.39 -0.02 1.24 16 32 H 0.10 1.61 5.74 -10.51 -0.06 1.55 16 33 H 0.08 1.82 7.01 -2.39 -0.02 1.81 16 34 H 0.21 3.70 8.06 -2.91 -0.02 3.68 16 35 H 0.01 0.44 7.33 -2.39 -0.02 0.43 16 36 H 0.00 -0.11 6.82 -2.39 -0.02 -0.13 16 Total: -1.00 -83.15 320.72 1.11 -82.05 By element: Atomic # 1 Polarization: -1.05 SS G_CDS: 1.08 Total: 0.03 kcal Atomic # 6 Polarization: 18.49 SS G_CDS: 5.74 Total: 24.23 kcal Atomic # 7 Polarization: -126.79 SS G_CDS: -6.52 Total: -133.32 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -0.07 Total: -28.05 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Atomic # 16 Polarization: 6.76 SS G_CDS: -1.06 Total: 5.69 kcal Atomic # 17 Polarization: 0.51 SS G_CDS: -0.08 Total: 0.43 kcal Total: -83.15 1.11 -82.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076032240.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.307 kcal (2) G-P(sol) polarization free energy of solvation -83.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds