Wall clock time and date at job start Tue Mar 31 2020 15:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86806 * 120.00271 * 2 1 4 4 H 1.48498 * 109.47127 * 270.00111 * 3 2 1 5 5 H 1.48494 * 109.47047 * 30.00254 * 3 2 1 6 6 H 1.48495 * 109.47029 * 150.00008 * 3 2 1 7 7 C 1.38822 * 120.00022 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99828 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99425 * 0.02562 * 7 2 1 10 10 C 1.46709 * 125.31683 * 180.02562 * 9 7 2 11 11 C 1.54046 * 106.82809 * 161.83895 * 10 9 7 12 12 H 1.08995 * 113.43078 * 262.66975 * 11 10 9 13 13 C 1.55121 * 108.26081 * 135.80364 * 11 10 9 14 14 C 1.54856 * 101.78087 * 286.09281 * 13 11 10 15 15 N 1.47397 * 104.80787 * 322.81559 * 14 13 11 16 16 C 1.34773 * 125.58820 * 204.61058 * 15 14 13 17 17 O 1.21629 * 119.99966 * 180.02562 * 16 15 14 18 18 C 1.47225 * 120.00011 * 0.02562 * 16 15 14 19 19 N 1.30599 * 125.53274 * 0.02562 * 18 16 15 20 20 C 1.30738 * 115.89825 * 179.97438 * 19 18 16 21 21 Cl 1.73602 * 122.12231 * 180.02562 * 20 19 18 22 22 C 1.34335 * 115.75607 * 0.02562 * 20 19 18 23 23 S 1.71068 * 109.09535 * 359.97438 * 22 20 19 24 24 C 1.46734 * 108.82148 * 24.86657 * 15 14 13 25 25 H 1.09000 * 111.33116 * 235.86046 * 24 15 14 26 26 C 1.46630 * 125.32952 * 0.02562 * 9 7 2 27 27 H 0.96998 * 119.99783 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.99194 * 42.49541 * 10 9 7 29 29 H 1.09003 * 109.98592 * 281.17931 * 10 9 7 30 30 H 1.08996 * 110.97219 * 167.96392 * 13 11 10 31 31 H 1.09007 * 110.99516 * 44.22732 * 13 11 10 32 32 H 1.08994 * 110.37178 * 203.98336 * 14 13 11 33 33 H 1.09002 * 110.37142 * 81.63947 * 14 13 11 34 34 H 1.08002 * 125.45289 * 180.26404 * 22 20 19 35 35 H 1.09005 * 109.75755 * 300.91162 * 26 9 7 36 36 H 1.09001 * 109.75809 * 61.60718 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3880 -0.0016 10 6 1.9380 -3.7211 -0.0017 11 6 0.8507 -4.7115 0.4566 12 1 0.9079 -4.9578 1.5168 13 6 0.9037 -5.9545 -0.4700 14 6 0.2769 -5.4034 -1.7744 15 7 -0.7918 -4.4938 -1.3238 16 6 -1.8835 -4.1524 -2.0366 17 8 -2.7044 -3.3896 -1.5638 18 6 -2.0822 -4.7026 -3.3876 19 7 -1.2737 -5.5270 -3.9979 20 6 -1.6356 -5.8978 -5.1983 21 17 -0.6820 -6.9893 -6.1539 22 6 -2.7920 -5.3807 -5.6452 23 16 -3.4489 -4.3565 -4.4428 24 6 -0.4693 -4.0163 0.0257 25 1 -1.2769 -4.2306 0.7257 26 6 -0.1345 -2.5241 -0.0028 27 1 -0.4850 0.8400 0.0004 28 1 2.7793 -3.7447 0.6909 29 1 2.2748 -3.9763 -1.0065 30 1 0.3051 -6.7697 -0.0637 31 1 1.9325 -6.2741 -0.6363 32 1 -0.1418 -6.2166 -2.3672 33 1 1.0222 -4.8563 -2.3518 34 1 -3.2382 -5.5832 -6.6077 35 1 -0.5510 -2.0339 0.8773 36 1 -0.5460 -2.0722 -0.9053 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076169865.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:31 Heat of formation + Delta-G solvation = 56.957134 kcal Electronic energy + Delta-G solvation = -23668.456933 eV Core-core repulsion = 20114.038981 eV Total energy + Delta-G solvation = -3554.417952 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.055 amu Computer time = 4.60 seconds Orbital eigenvalues (eV) -40.58110 -39.62360 -37.81702 -36.74217 -34.78638 -32.30109 -30.89132 -30.72445 -28.75270 -26.95959 -25.93077 -24.65817 -22.95637 -21.47843 -20.68093 -19.86352 -18.94678 -18.22786 -17.03754 -16.62294 -16.24273 -15.69325 -15.42027 -14.84064 -14.48741 -14.09240 -13.89492 -13.71350 -13.21396 -12.93909 -12.67160 -12.36028 -12.14616 -11.90663 -11.78615 -11.51128 -11.30775 -11.12022 -11.00690 -10.74315 -10.53818 -10.29373 -10.20701 -10.09155 -10.01128 -9.87081 -9.71626 -9.65111 -9.00023 -8.56531 -8.22947 -6.78303 -5.65141 -3.00627 -0.02658 0.77961 1.04752 1.99630 2.01975 3.16354 3.30039 3.43098 3.47614 3.50121 4.08730 4.52467 4.64703 4.75607 4.88328 4.95057 5.19978 5.30493 5.52720 5.56935 5.72927 5.79593 5.91604 6.03059 6.09161 6.30295 6.33380 6.47662 6.54956 6.66520 6.88393 7.01257 7.52636 7.66007 7.80106 7.90555 8.26784 8.33237 9.26568 9.87597 10.50985 11.45134 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.014803 B = 0.003960 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.009147 B = 7068.262150 C = 7586.904131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.006 4.006 3 Si 0.911 3.089 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.233 4.233 8 H 0.078 0.922 9 N -0.603 5.603 10 C 0.141 3.859 11 C -0.110 4.110 12 H 0.100 0.900 13 C -0.126 4.126 14 C 0.101 3.899 15 N -0.572 5.572 16 C 0.604 3.396 17 O -0.516 6.516 18 C 0.017 3.983 19 N -0.421 5.421 20 C 0.109 3.891 21 Cl -0.011 7.011 22 C -0.283 4.283 23 S 0.295 5.705 24 C 0.115 3.885 25 H 0.084 0.916 26 C 0.175 3.825 27 H 0.253 0.747 28 H 0.035 0.965 29 H 0.020 0.980 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.192 0.808 35 H 0.056 0.944 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.436 -16.015 -9.609 19.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.361 4.361 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.015 3.985 11 C -0.129 4.129 12 H 0.118 0.882 13 C -0.165 4.165 14 C -0.022 4.022 15 N -0.305 5.305 16 C 0.387 3.613 17 O -0.391 6.391 18 C -0.259 4.259 19 N -0.140 5.140 20 C -0.056 4.056 21 Cl 0.017 6.983 22 C -0.426 4.426 23 S 0.550 5.450 24 C 0.012 3.988 25 H 0.102 0.898 26 C 0.050 3.950 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.037 0.963 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.112 0.888 33 H 0.091 0.909 34 H 0.209 0.791 35 H 0.074 0.926 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.347 -14.965 -9.087 18.623 hybrid contribution 1.236 0.117 -0.932 1.552 sum -5.111 -14.848 -10.019 18.627 Atomic orbital electron populations 1.69976 1.04780 1.25083 1.56521 1.24825 0.95685 0.97666 1.02088 0.86141 0.78575 0.83643 0.77519 1.21689 1.21648 1.20687 1.19017 0.90381 0.82323 1.44368 0.90419 1.44219 1.01388 1.00017 1.87309 1.21324 0.93958 0.85817 0.97430 1.23167 0.95467 0.94796 0.99510 0.88166 1.22809 1.01331 0.97191 0.95154 1.22589 0.89634 0.93253 0.96697 1.48108 1.20205 1.45156 1.16998 1.16128 0.82055 0.81492 0.81657 1.90919 1.43835 1.35074 1.69310 1.27754 0.96082 1.01168 1.00908 1.66474 1.29390 1.11457 1.06727 1.20447 0.93245 1.00404 0.91481 1.98399 1.71847 1.60579 1.67461 1.26606 1.01099 1.06518 1.08344 1.84205 1.21013 1.37088 1.02701 1.22653 0.96371 0.98380 0.81391 0.89843 1.21152 0.84505 0.87039 1.02314 0.93653 0.94642 0.96285 0.91108 0.89856 0.88841 0.90932 0.79059 0.92597 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 66. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.79 10.24 55.49 0.57 -27.22 16 2 C -0.01 -0.17 5.48 -17.43 -0.10 -0.27 16 3 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 7 C -0.23 -6.58 10.25 -15.06 -0.15 -6.73 16 8 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 9 N -0.60 -15.56 3.38 -172.34 -0.58 -16.14 16 10 C 0.14 2.85 6.45 -3.38 -0.02 2.83 16 11 C -0.11 -1.82 4.35 -87.74 -0.38 -2.20 16 12 H 0.10 1.49 8.14 -51.93 -0.42 1.06 16 13 C -0.13 -1.67 6.35 -24.63 -0.16 -1.82 16 14 C 0.10 1.55 5.66 -2.57 -0.01 1.53 16 15 N -0.57 -10.48 2.99 -164.05 -0.49 -10.97 16 16 C 0.60 11.37 7.39 -12.61 -0.09 11.28 16 17 O -0.52 -11.18 16.82 5.25 0.09 -11.09 16 18 C 0.02 0.26 7.32 -14.43 -0.11 0.15 16 19 N -0.42 -6.07 7.60 -8.61 -0.07 -6.14 16 20 C 0.11 1.32 7.22 -19.39 -0.14 1.18 16 21 Cl -0.01 -0.12 29.20 -51.86 -1.51 -1.63 16 22 C -0.28 -2.78 10.93 29.36 0.32 -2.46 16 23 S 0.29 3.37 23.03 -107.50 -2.48 0.90 16 24 C 0.12 2.26 3.55 -66.61 -0.24 2.02 16 25 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 26 C 0.18 4.43 4.91 -3.99 -0.02 4.41 16 27 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.02 0.39 6.52 -51.93 -0.34 0.05 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.96 8.08 -51.92 -0.42 0.54 16 32 H 0.09 1.33 6.12 -51.93 -0.32 1.01 16 33 H 0.07 1.23 7.18 -51.93 -0.37 0.86 16 34 H 0.19 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.06 1.58 7.33 -51.93 -0.38 1.20 16 36 H 0.05 1.58 6.66 -51.93 -0.35 1.23 16 LS Contribution 322.65 15.07 4.86 4.86 Total: -1.00 -32.95 322.65 -9.57 -42.52 By element: Atomic # 1 Polarization: 1.33 SS G_CDS: -3.83 Total: -2.51 kcal Atomic # 6 Polarization: 11.03 SS G_CDS: -1.10 Total: 9.93 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: -0.57 Total: -60.47 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.09 Total: -11.09 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Atomic # 16 Polarization: 3.37 SS G_CDS: -2.48 Total: 0.90 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -1.51 Total: -1.63 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.95 -9.57 -42.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076169865.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.477 kcal (2) G-P(sol) polarization free energy of solvation -32.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.61 seconds