Wall clock time and date at job start Tue Mar 31 2020 15:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86806 * 120.00271 * 2 1 4 4 H 1.48498 * 109.47127 * 270.00111 * 3 2 1 5 5 H 1.48494 * 109.47047 * 30.00254 * 3 2 1 6 6 H 1.48495 * 109.47029 * 150.00008 * 3 2 1 7 7 C 1.38822 * 120.00022 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99828 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99425 * 0.02562 * 7 2 1 10 10 C 1.46709 * 125.31683 * 180.02562 * 9 7 2 11 11 C 1.54046 * 106.82809 * 161.83895 * 10 9 7 12 12 H 1.08995 * 113.43078 * 262.66975 * 11 10 9 13 13 C 1.55121 * 108.26081 * 135.80364 * 11 10 9 14 14 C 1.54856 * 101.78087 * 286.09281 * 13 11 10 15 15 N 1.47397 * 104.80787 * 322.81559 * 14 13 11 16 16 C 1.34773 * 125.58820 * 204.61058 * 15 14 13 17 17 O 1.21629 * 119.99966 * 180.02562 * 16 15 14 18 18 C 1.47225 * 120.00011 * 0.02562 * 16 15 14 19 19 N 1.30599 * 125.53274 * 0.02562 * 18 16 15 20 20 C 1.30738 * 115.89825 * 179.97438 * 19 18 16 21 21 Cl 1.73602 * 122.12231 * 180.02562 * 20 19 18 22 22 C 1.34335 * 115.75607 * 0.02562 * 20 19 18 23 23 S 1.71068 * 109.09535 * 359.97438 * 22 20 19 24 24 C 1.46734 * 108.82148 * 24.86657 * 15 14 13 25 25 H 1.09000 * 111.33116 * 235.86046 * 24 15 14 26 26 C 1.46630 * 125.32952 * 0.02562 * 9 7 2 27 27 H 0.96998 * 119.99783 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.99194 * 42.49541 * 10 9 7 29 29 H 1.09003 * 109.98592 * 281.17931 * 10 9 7 30 30 H 1.08996 * 110.97219 * 167.96392 * 13 11 10 31 31 H 1.09007 * 110.99516 * 44.22732 * 13 11 10 32 32 H 1.08994 * 110.37178 * 203.98336 * 14 13 11 33 33 H 1.09002 * 110.37142 * 81.63947 * 14 13 11 34 34 H 1.08002 * 125.45289 * 180.26404 * 22 20 19 35 35 H 1.09005 * 109.75755 * 300.91162 * 26 9 7 36 36 H 1.09001 * 109.75809 * 61.60718 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3880 -0.0016 10 6 1.9380 -3.7211 -0.0017 11 6 0.8507 -4.7115 0.4566 12 1 0.9079 -4.9578 1.5168 13 6 0.9037 -5.9545 -0.4700 14 6 0.2769 -5.4034 -1.7744 15 7 -0.7918 -4.4938 -1.3238 16 6 -1.8835 -4.1524 -2.0366 17 8 -2.7044 -3.3896 -1.5638 18 6 -2.0822 -4.7026 -3.3876 19 7 -1.2737 -5.5270 -3.9979 20 6 -1.6356 -5.8978 -5.1983 21 17 -0.6820 -6.9893 -6.1539 22 6 -2.7920 -5.3807 -5.6452 23 16 -3.4489 -4.3565 -4.4428 24 6 -0.4693 -4.0163 0.0257 25 1 -1.2769 -4.2306 0.7257 26 6 -0.1345 -2.5241 -0.0028 27 1 -0.4850 0.8400 0.0004 28 1 2.7793 -3.7447 0.6909 29 1 2.2748 -3.9763 -1.0065 30 1 0.3051 -6.7697 -0.0637 31 1 1.9325 -6.2741 -0.6363 32 1 -0.1418 -6.2166 -2.3672 33 1 1.0222 -4.8563 -2.3518 34 1 -3.2382 -5.5832 -6.6077 35 1 -0.5510 -2.0339 0.8773 36 1 -0.5460 -2.0722 -0.9053 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076169865.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:28 Heat of formation + Delta-G solvation = 34.695603 kcal Electronic energy + Delta-G solvation = -23669.422266 eV Core-core repulsion = 20114.038981 eV Total energy + Delta-G solvation = -3555.383284 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.055 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -41.89022 -40.78689 -39.30924 -37.61637 -36.56536 -34.03762 -32.55269 -31.84880 -30.41173 -28.34371 -27.29784 -26.58315 -24.22948 -22.89592 -22.19007 -21.20539 -20.29113 -19.36453 -18.88498 -18.07814 -17.50352 -16.97812 -16.75184 -16.45457 -15.97292 -15.61086 -15.41757 -14.91540 -14.60249 -14.48875 -14.19530 -13.93982 -13.48491 -13.22305 -12.99677 -12.93872 -12.81526 -12.74905 -12.48722 -12.17576 -12.12419 -11.95860 -11.86385 -11.67119 -11.52328 -11.42736 -10.97235 -10.92115 -10.71875 -10.01187 -9.66930 -8.90048 -7.84078 -5.22195 -1.03795 -0.17290 0.09940 0.96894 1.09506 1.42944 1.45633 1.54669 1.84506 1.99909 2.48278 2.93690 3.32794 3.46979 3.56936 3.73212 3.81030 3.95820 3.99855 4.26345 4.36248 4.41536 4.52507 4.65763 4.72585 4.89096 4.95692 5.12304 5.16050 5.27078 5.39809 5.44498 5.58740 5.76223 6.01341 6.18849 6.37772 6.87221 7.08499 7.78451 8.40387 9.24723 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.014803 B = 0.003960 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.009147 B = 7068.262150 C = 7586.904131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.068 4.068 3 Si 0.979 3.021 4 H -0.289 1.289 5 H -0.295 1.295 6 H -0.263 1.263 7 C -0.244 4.244 8 H 0.087 0.913 9 N -0.624 5.624 10 C 0.134 3.866 11 C -0.095 4.095 12 H 0.126 0.874 13 C -0.108 4.108 14 C 0.102 3.898 15 N -0.578 5.578 16 C 0.597 3.403 17 O -0.562 6.562 18 C -0.035 4.035 19 N -0.424 5.424 20 C 0.083 3.917 21 Cl 0.002 6.998 22 C -0.248 4.248 23 S 0.340 5.660 24 C 0.118 3.882 25 H 0.088 0.912 26 C 0.194 3.806 27 H 0.244 0.756 28 H 0.047 0.953 29 H 0.024 0.976 30 H 0.100 0.900 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.052 0.948 34 H 0.233 0.767 35 H 0.011 0.989 36 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.552 -18.495 -10.997 21.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.261 4.261 3 Si 0.807 3.193 4 H -0.216 1.216 5 H -0.222 1.222 6 H -0.187 1.187 7 C -0.373 4.373 8 H 0.105 0.895 9 N -0.351 5.351 10 C 0.009 3.991 11 C -0.114 4.114 12 H 0.144 0.856 13 C -0.146 4.146 14 C -0.020 4.020 15 N -0.310 5.310 16 C 0.382 3.618 17 O -0.441 6.441 18 C -0.308 4.308 19 N -0.144 5.144 20 C -0.081 4.081 21 Cl 0.030 6.970 22 C -0.390 4.390 23 S 0.594 5.406 24 C 0.014 3.986 25 H 0.106 0.894 26 C 0.068 3.932 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.042 0.958 30 H 0.118 0.882 31 H 0.129 0.871 32 H 0.126 0.874 33 H 0.071 0.929 34 H 0.250 0.750 35 H 0.029 0.971 36 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges -5.403 -17.505 -10.475 21.103 hybrid contribution 0.925 0.858 -0.660 1.424 sum -4.479 -16.647 -11.135 20.522 Atomic orbital electron populations 1.70262 1.06516 1.25102 1.58174 1.25729 0.96492 1.01319 1.02577 0.85067 0.77825 0.79031 0.77356 1.21591 1.22187 1.18711 1.19487 0.91093 0.83630 1.43049 0.89493 1.44538 1.01862 1.01639 1.87017 1.21583 0.95349 0.84090 0.98028 1.23176 0.91445 0.95118 1.01675 0.85574 1.22845 1.03360 0.95976 0.92397 1.22712 0.88464 0.92766 0.98054 1.48206 1.20833 1.45409 1.16525 1.16644 0.81528 0.80707 0.82884 1.90871 1.45382 1.37044 1.70812 1.27054 0.99083 1.04134 1.00575 1.66356 1.29524 1.10880 1.07667 1.20628 0.94506 1.01682 0.91308 1.98403 1.71681 1.60102 1.66766 1.27131 0.99503 1.03424 1.08933 1.84100 1.18741 1.36177 1.01589 1.22414 0.98332 0.94945 0.82951 0.89411 1.20693 0.84248 0.90564 0.97737 0.94662 0.93431 0.95797 0.88176 0.87069 0.87354 0.92929 0.75030 0.97131 0.97973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.17 10.24 21.65 0.22 -60.95 16 2 C -0.07 -4.07 5.48 84.87 0.47 -3.60 16 3 Si 0.98 47.55 29.55 68.60 2.03 49.58 16 4 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 5 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 6 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.24 -14.10 10.25 84.04 0.86 -13.24 16 8 H 0.09 4.73 7.83 -2.91 -0.02 4.71 16 9 N -0.62 -33.18 3.38 -699.18 -2.36 -35.54 16 10 C 0.13 5.32 6.45 86.69 0.56 5.88 16 11 C -0.09 -2.96 4.35 -8.92 -0.04 -3.00 16 12 H 0.13 3.35 8.14 -2.39 -0.02 3.33 16 13 C -0.11 -2.47 6.35 31.96 0.20 -2.27 16 14 C 0.10 3.00 5.66 86.84 0.49 3.49 16 15 N -0.58 -21.61 2.99 -791.19 -2.37 -23.98 16 16 C 0.60 23.48 7.39 86.61 0.64 24.12 16 17 O -0.56 -26.07 16.82 -4.12 -0.07 -26.14 16 18 C -0.04 -1.08 7.32 87.24 0.64 -0.44 16 19 N -0.42 -11.77 7.60 -181.16 -1.38 -13.15 16 20 C 0.08 1.83 7.22 83.96 0.61 2.43 16 21 Cl 0.00 0.05 29.20 -2.72 -0.08 -0.03 16 22 C -0.25 -4.07 10.93 66.93 0.73 -3.34 16 23 S 0.34 7.32 23.03 -56.49 -1.30 6.02 16 24 C 0.12 4.72 3.55 45.72 0.16 4.88 16 25 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 26 C 0.19 10.41 4.91 86.34 0.42 10.83 16 27 H 0.24 15.36 8.31 -92.71 -0.77 14.59 16 28 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.02 0.95 6.52 -2.39 -0.02 0.93 16 30 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.11 2.03 8.08 -2.38 -0.02 2.01 16 32 H 0.11 2.89 6.12 -2.39 -0.01 2.88 16 33 H 0.05 1.75 7.18 -2.39 -0.02 1.74 16 34 H 0.23 1.81 8.06 -2.91 -0.02 1.79 16 35 H 0.01 0.65 7.33 -2.38 -0.02 0.63 16 36 H 0.00 0.13 6.66 -2.39 -0.02 0.12 16 Total: -1.00 -78.39 322.65 1.57 -76.82 By element: Atomic # 1 Polarization: 0.50 SS G_CDS: 1.13 Total: 1.63 kcal Atomic # 6 Polarization: 20.00 SS G_CDS: 5.74 Total: 25.75 kcal Atomic # 7 Polarization: -127.73 SS G_CDS: -5.88 Total: -133.62 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -0.07 Total: -26.14 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.58 kcal Atomic # 16 Polarization: 7.32 SS G_CDS: -1.30 Total: 6.02 kcal Atomic # 17 Polarization: 0.05 SS G_CDS: -0.08 Total: -0.03 kcal Total: -78.39 1.57 -76.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076169865.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.520 kcal (2) G-P(sol) polarization free energy of solvation -78.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds