Wall clock time and date at job start Tue Mar 31 2020 15:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 120.00033 * 2 1 4 4 H 1.48495 * 109.47669 * 240.00189 * 3 2 1 5 5 H 1.48500 * 109.47249 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46999 * 120.00278 * 3 2 1 7 7 C 1.38814 * 120.00085 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00147 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99560 * 359.97438 * 7 2 1 10 10 C 1.47028 * 125.54876 * 179.97438 * 9 7 2 11 11 C 1.53262 * 108.21996 * 177.85744 * 10 9 7 12 12 H 1.09000 * 113.08574 * 222.51134 * 11 10 9 13 13 C 1.54798 * 109.75124 * 95.80517 * 11 10 9 14 14 C 1.54930 * 101.50403 * 212.29357 * 13 11 10 15 15 N 1.47353 * 104.89189 * 37.23558 * 14 13 11 16 16 C 1.34776 * 125.53224 * 156.50914 * 15 14 13 17 17 O 1.21703 * 120.00349 * 176.45878 * 16 15 14 18 18 C 1.46528 * 119.99847 * 356.45685 * 16 15 14 19 19 S 1.76214 * 126.17646 * 7.01252 * 18 16 15 20 20 C 1.70922 * 90.38851 * 179.97438 * 19 18 16 21 21 N 1.29358 * 110.61794 * 359.97438 * 20 19 18 22 22 C 1.31044 * 117.45811 * 359.75002 * 21 20 19 23 23 Cl 1.73599 * 123.05689 * 180.26601 * 22 21 20 24 24 C 1.47211 * 108.93861 * 336.53968 * 15 14 13 25 25 H 1.08997 * 112.29046 * 235.66008 * 24 15 14 26 26 C 1.46604 * 125.30991 * 0.02799 * 9 7 2 27 27 H 0.96998 * 119.99999 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.67400 * 58.16992 * 10 9 7 29 29 H 1.09002 * 109.74412 * 297.58511 * 10 9 7 30 30 H 1.09006 * 111.01693 * 94.24141 * 13 11 10 31 31 H 1.08996 * 111.05424 * 330.36423 * 13 11 10 32 32 H 1.09000 * 110.35804 * 278.38254 * 14 13 11 33 33 H 1.08998 * 110.36110 * 156.08842 * 14 13 11 34 34 H 1.07994 * 124.68813 * 180.02562 * 20 19 18 35 35 H 1.08999 * 109.91793 * 78.40225 * 26 9 7 36 36 H 1.09001 * 109.91082 * 317.31159 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 1.9340 -3.7265 -0.0016 11 6 0.8081 -4.7648 0.0532 12 1 1.0185 -5.5878 0.7363 13 6 0.4732 -5.2494 -1.3783 14 6 -1.0454 -5.5335 -1.2610 15 7 -1.5623 -4.4716 -0.3798 16 6 -2.8377 -4.0377 -0.3411 17 8 -3.1700 -3.1966 0.4733 18 6 -3.8244 -4.5786 -1.2798 19 16 -3.5701 -5.9136 -2.4014 20 6 -5.1748 -5.7575 -2.9691 21 7 -5.7849 -4.7982 -2.3520 22 6 -5.1116 -4.1424 -1.4390 23 17 -5.7890 -2.8353 -0.5192 24 6 -0.4595 -3.9612 0.4510 25 1 -0.6825 -4.0208 1.5163 26 6 -0.1342 -2.5236 -0.0006 27 1 -0.4850 0.8400 0.0004 28 1 2.5794 -3.8369 0.8699 29 1 2.5182 -3.8647 -0.9114 30 1 1.0233 -6.1583 -1.6221 31 1 0.6691 -4.4677 -2.1122 32 1 -1.2144 -6.5130 -0.8138 33 1 -1.5187 -5.4765 -2.2412 34 1 -5.6181 -6.3750 -3.7362 35 1 -0.5230 -2.3529 -1.0045 36 1 -0.5735 -1.8079 0.6942 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076579667.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:39 Heat of formation + Delta-G solvation = 58.969127 kcal Electronic energy + Delta-G solvation = -23733.748227 eV Core-core repulsion = 20179.417521 eV Total energy + Delta-G solvation = -3554.330705 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.055 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -40.36694 -39.72314 -37.71411 -36.48455 -35.03459 -32.42191 -30.80752 -30.67484 -28.63903 -27.06714 -25.98969 -24.61521 -23.04860 -21.75186 -20.27648 -19.78965 -19.33450 -18.40931 -17.01510 -16.60108 -16.15584 -15.79564 -15.06645 -14.90616 -14.59655 -14.55564 -14.11731 -13.69664 -13.31766 -12.97805 -12.81059 -12.27830 -12.22192 -11.99724 -11.75845 -11.58949 -11.29607 -11.06224 -10.99408 -10.79069 -10.66847 -10.31244 -10.11224 -9.99498 -9.80880 -9.76634 -9.65531 -9.58730 -9.00677 -8.59540 -8.29975 -6.83141 -5.62394 -3.04953 -0.01984 0.76333 1.18985 2.09930 2.20247 3.02162 3.29956 3.42485 3.46391 3.49168 4.15552 4.47790 4.52625 4.62547 4.71802 4.93104 5.09360 5.31335 5.34478 5.38647 5.54262 5.56248 5.72330 5.84908 5.92913 6.14951 6.23289 6.45966 6.48617 6.61489 6.81552 7.14289 7.46871 7.61993 7.75047 7.93447 8.31414 8.40066 9.24022 9.84695 10.46805 11.41948 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.015119 B = 0.004436 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.581850 B = 6310.862193 C = 7591.746972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.234 4.234 8 H 0.078 0.922 9 N -0.601 5.601 10 C 0.144 3.856 11 C -0.108 4.108 12 H 0.090 0.910 13 C -0.117 4.117 14 C 0.091 3.909 15 N -0.602 5.602 16 C 0.600 3.400 17 O -0.491 6.491 18 C -0.267 4.267 19 S 0.221 5.779 20 C 0.012 3.988 21 N -0.470 5.470 22 C 0.173 3.827 23 Cl 0.031 6.969 24 C 0.118 3.882 25 H 0.088 0.912 26 C 0.163 3.837 27 H 0.254 0.746 28 H 0.026 0.974 29 H 0.027 0.973 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.208 0.792 35 H 0.020 0.980 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.670 -17.695 -6.114 19.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.362 4.362 8 H 0.096 0.904 9 N -0.328 5.328 10 C 0.018 3.982 11 C -0.128 4.128 12 H 0.109 0.891 13 C -0.155 4.155 14 C -0.034 4.034 15 N -0.336 5.336 16 C 0.385 3.615 17 O -0.366 6.366 18 C -0.393 4.393 19 S 0.475 5.525 20 C -0.282 4.282 21 N -0.185 5.185 22 C 0.008 3.992 23 Cl 0.060 6.940 24 C 0.015 3.985 25 H 0.106 0.894 26 C 0.037 3.963 27 H 0.065 0.935 28 H 0.044 0.956 29 H 0.045 0.955 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.225 0.775 35 H 0.038 0.962 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.824 -17.427 -6.017 19.659 hybrid contribution -0.180 1.538 0.199 1.562 sum -7.004 -15.889 -5.818 18.313 Atomic orbital electron populations 1.69897 1.04767 1.25185 1.56238 1.24845 0.95693 0.97766 1.01953 0.86189 0.78409 0.83215 0.77851 1.21213 1.21568 1.21081 1.18961 0.90388 0.82178 1.44642 0.90377 1.44232 1.01444 0.99837 1.87301 1.21056 0.93276 0.85450 0.98398 1.22878 0.95820 0.98011 0.96042 0.89138 1.22781 0.92670 1.02102 0.97974 1.22539 0.96037 0.91237 0.93543 1.48344 1.07690 1.37740 1.39865 1.16080 0.80099 0.82117 0.83173 1.90947 1.78017 1.30735 1.36908 1.25820 0.99324 1.05832 1.08310 1.84259 1.11115 1.27917 1.29198 1.28813 0.97280 0.98726 1.03421 1.65718 1.37064 1.07732 1.07995 1.21109 0.88552 0.94833 0.94685 1.98456 1.84794 1.41951 1.68826 1.23035 0.83182 0.97926 0.94393 0.89361 1.21692 0.84513 0.89894 1.00152 0.93497 0.95645 0.95511 0.89876 0.89613 0.90780 0.91136 0.77515 0.96250 0.88403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.68 10.16 55.49 0.56 -27.12 16 2 C -0.01 -0.17 5.48 -17.43 -0.10 -0.26 16 3 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.23 -6.50 10.26 -15.06 -0.15 -6.65 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 9 N -0.60 -15.21 3.39 -171.86 -0.58 -15.79 16 10 C 0.14 2.81 6.68 -3.62 -0.02 2.78 16 11 C -0.11 -1.68 3.91 -88.34 -0.35 -2.02 16 12 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 13 C -0.12 -1.49 6.23 -24.77 -0.15 -1.65 16 14 C 0.09 1.11 5.59 -2.56 -0.01 1.09 16 15 N -0.60 -10.20 2.85 -163.25 -0.47 -10.67 16 16 C 0.60 11.16 7.60 -12.92 -0.10 11.06 16 17 O -0.49 -10.99 15.39 5.19 0.08 -10.91 16 18 C -0.27 -4.08 6.41 -36.75 -0.24 -4.31 16 19 S 0.22 2.10 18.79 -107.50 -2.02 0.08 16 20 C 0.01 0.11 12.20 51.72 0.63 0.75 16 21 N -0.47 -6.35 10.50 -12.22 -0.13 -6.48 16 22 C 0.17 2.72 7.41 -18.39 -0.14 2.58 16 23 Cl 0.03 0.52 27.41 -51.86 -1.42 -0.90 16 24 C 0.12 2.25 3.86 -65.74 -0.25 2.00 16 25 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 26 C 0.16 4.06 4.86 -3.38 -0.02 4.05 16 27 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.03 0.51 7.74 -51.93 -0.40 0.11 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.09 1.30 7.88 -51.93 -0.41 0.89 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.77 5.02 -29.78 -0.15 0.62 16 34 H 0.21 0.99 8.06 -52.49 -0.42 0.56 16 35 H 0.02 0.54 7.94 -51.93 -0.41 0.13 16 36 H 0.10 2.88 6.21 -51.93 -0.32 2.56 16 LS Contribution 319.59 15.07 4.82 4.82 Total: -1.00 -34.52 319.59 -8.86 -43.38 By element: Atomic # 1 Polarization: 0.60 SS G_CDS: -3.78 Total: -3.18 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: -0.90 Total: 9.41 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: -0.61 Total: -60.05 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.08 Total: -10.91 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -2.02 Total: 0.08 kcal Atomic # 17 Polarization: 0.52 SS G_CDS: -1.42 Total: -0.90 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.52 -8.86 -43.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076579667.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.349 kcal (2) G-P(sol) polarization free energy of solvation -34.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds