Wall clock time and date at job start Tue Mar 31 2020 15:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 120.00033 * 2 1 4 4 H 1.48495 * 109.47669 * 240.00189 * 3 2 1 5 5 H 1.48500 * 109.47249 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46999 * 120.00278 * 3 2 1 7 7 C 1.38814 * 120.00085 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00147 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99560 * 359.97438 * 7 2 1 10 10 C 1.47028 * 125.54876 * 179.97438 * 9 7 2 11 11 C 1.53262 * 108.21996 * 177.85744 * 10 9 7 12 12 H 1.09000 * 113.08574 * 222.51134 * 11 10 9 13 13 C 1.54798 * 109.75124 * 95.80517 * 11 10 9 14 14 C 1.54930 * 101.50403 * 212.29357 * 13 11 10 15 15 N 1.47353 * 104.89189 * 37.23558 * 14 13 11 16 16 C 1.34776 * 125.53224 * 156.50914 * 15 14 13 17 17 O 1.21703 * 120.00349 * 176.45878 * 16 15 14 18 18 C 1.46528 * 119.99847 * 356.45685 * 16 15 14 19 19 S 1.76214 * 126.17646 * 7.01252 * 18 16 15 20 20 C 1.70922 * 90.38851 * 179.97438 * 19 18 16 21 21 N 1.29358 * 110.61794 * 359.97438 * 20 19 18 22 22 C 1.31044 * 117.45811 * 359.75002 * 21 20 19 23 23 Cl 1.73599 * 123.05689 * 180.26601 * 22 21 20 24 24 C 1.47211 * 108.93861 * 336.53968 * 15 14 13 25 25 H 1.08997 * 112.29046 * 235.66008 * 24 15 14 26 26 C 1.46604 * 125.30991 * 0.02799 * 9 7 2 27 27 H 0.96998 * 119.99999 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.67400 * 58.16992 * 10 9 7 29 29 H 1.09002 * 109.74412 * 297.58511 * 10 9 7 30 30 H 1.09006 * 111.01693 * 94.24141 * 13 11 10 31 31 H 1.08996 * 111.05424 * 330.36423 * 13 11 10 32 32 H 1.09000 * 110.35804 * 278.38254 * 14 13 11 33 33 H 1.08998 * 110.36110 * 156.08842 * 14 13 11 34 34 H 1.07994 * 124.68813 * 180.02562 * 20 19 18 35 35 H 1.08999 * 109.91793 * 78.40225 * 26 9 7 36 36 H 1.09001 * 109.91082 * 317.31159 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 1.9340 -3.7265 -0.0016 11 6 0.8081 -4.7648 0.0532 12 1 1.0185 -5.5878 0.7363 13 6 0.4732 -5.2494 -1.3783 14 6 -1.0454 -5.5335 -1.2610 15 7 -1.5623 -4.4716 -0.3798 16 6 -2.8377 -4.0377 -0.3411 17 8 -3.1700 -3.1966 0.4733 18 6 -3.8244 -4.5786 -1.2798 19 16 -3.5701 -5.9136 -2.4014 20 6 -5.1748 -5.7575 -2.9691 21 7 -5.7849 -4.7982 -2.3520 22 6 -5.1116 -4.1424 -1.4390 23 17 -5.7890 -2.8353 -0.5192 24 6 -0.4595 -3.9612 0.4510 25 1 -0.6825 -4.0208 1.5163 26 6 -0.1342 -2.5236 -0.0006 27 1 -0.4850 0.8400 0.0004 28 1 2.5794 -3.8369 0.8699 29 1 2.5182 -3.8647 -0.9114 30 1 1.0233 -6.1583 -1.6221 31 1 0.6691 -4.4677 -2.1122 32 1 -1.2144 -6.5130 -0.8138 33 1 -1.5187 -5.4765 -2.2412 34 1 -5.6181 -6.3750 -3.7362 35 1 -0.5230 -2.3529 -1.0045 36 1 -0.5735 -1.8079 0.6942 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076579667.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:36 Heat of formation + Delta-G solvation = 33.421986 kcal Electronic energy + Delta-G solvation = -23734.856034 eV Core-core repulsion = 20179.417521 eV Total energy + Delta-G solvation = -3555.438512 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.055 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -41.66966 -40.82109 -39.16728 -37.66904 -36.70745 -34.19814 -32.36929 -31.84767 -30.26003 -28.52092 -27.11205 -26.48736 -24.28777 -23.00178 -21.98795 -20.84561 -20.66825 -19.61643 -18.88334 -17.92169 -17.41787 -17.09797 -16.67468 -16.09022 -16.05817 -15.55917 -15.51970 -15.17564 -14.88272 -14.38725 -14.18795 -13.86335 -13.70258 -13.26837 -13.14750 -12.98567 -12.85636 -12.76641 -12.59060 -12.26771 -12.17562 -11.93928 -11.81131 -11.56754 -11.42119 -11.20110 -10.80157 -10.73842 -10.63605 -10.04888 -9.62368 -8.91308 -7.79227 -5.24174 -1.00235 -0.20717 0.33382 1.02102 1.19124 1.42533 1.46841 1.53639 1.72884 2.00321 2.48007 3.17610 3.31766 3.43622 3.52453 3.68216 3.74208 3.85500 4.01307 4.25983 4.30852 4.39180 4.47935 4.53184 4.63972 4.80647 4.94635 5.08735 5.15249 5.17094 5.46317 5.48430 5.54696 5.80527 6.21654 6.24798 6.41494 6.98311 7.08113 7.78420 8.38957 9.22763 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.015119 B = 0.004436 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.581850 B = 6310.862193 C = 7591.746972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.071 4.071 3 Si 0.980 3.020 4 H -0.272 1.272 5 H -0.301 1.301 6 H -0.272 1.272 7 C -0.240 4.240 8 H 0.090 0.910 9 N -0.625 5.625 10 C 0.135 3.865 11 C -0.090 4.090 12 H 0.137 0.863 13 C -0.109 4.109 14 C 0.085 3.915 15 N -0.604 5.604 16 C 0.590 3.410 17 O -0.551 6.551 18 C -0.316 4.316 19 S 0.324 5.676 20 C 0.030 3.970 21 N -0.502 5.502 22 C 0.165 3.835 23 Cl -0.001 7.001 24 C 0.122 3.878 25 H 0.076 0.924 26 C 0.183 3.817 27 H 0.242 0.758 28 H 0.034 0.966 29 H 0.041 0.959 30 H 0.137 0.863 31 H 0.055 0.945 32 H 0.119 0.881 33 H 0.085 0.915 34 H 0.260 0.740 35 H -0.023 1.023 36 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.114 -22.155 -8.226 24.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.264 4.264 3 Si 0.808 3.192 4 H -0.198 1.198 5 H -0.228 1.228 6 H -0.198 1.198 7 C -0.369 4.369 8 H 0.108 0.892 9 N -0.351 5.351 10 C 0.011 3.989 11 C -0.109 4.109 12 H 0.154 0.846 13 C -0.146 4.146 14 C -0.037 4.037 15 N -0.337 5.337 16 C 0.378 3.622 17 O -0.430 6.430 18 C -0.442 4.442 19 S 0.580 5.420 20 C -0.262 4.262 21 N -0.217 5.217 22 C -0.001 4.001 23 Cl 0.027 6.973 24 C 0.017 3.983 25 H 0.094 0.906 26 C 0.056 3.944 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.155 0.845 31 H 0.074 0.926 32 H 0.137 0.863 33 H 0.102 0.898 34 H 0.276 0.724 35 H -0.005 1.005 36 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.199 -21.982 -8.171 24.021 hybrid contribution -0.618 2.795 0.751 2.960 sum -5.817 -19.187 -7.420 21.378 Atomic orbital electron populations 1.70254 1.06580 1.24866 1.58310 1.25761 0.96421 1.01487 1.02704 0.85126 0.76992 0.78534 0.78551 1.19803 1.22775 1.19821 1.19459 0.91191 0.83476 1.42781 0.89178 1.44554 1.01894 1.01657 1.87027 1.21364 0.94836 0.83586 0.99141 1.22945 0.91435 0.97452 0.99087 0.84558 1.22821 0.93466 1.03406 0.94953 1.22959 0.95586 0.91439 0.93761 1.48406 1.06714 1.38465 1.40134 1.16637 0.81018 0.81450 0.83117 1.90900 1.79283 1.33320 1.39481 1.25653 0.98534 1.09487 1.10536 1.83664 1.09912 1.23173 1.25279 1.29759 0.97353 0.96807 1.02307 1.65763 1.37794 1.09446 1.08738 1.21207 0.89003 0.94660 0.95266 1.98433 1.85229 1.43754 1.69870 1.22693 0.86141 0.95220 0.94200 0.90634 1.21174 0.84313 0.92709 0.96198 0.94906 0.94814 0.94084 0.84455 0.92568 0.86321 0.89774 0.72410 1.00498 0.94334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 60. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.88 10.16 21.65 0.22 -61.66 16 2 C -0.07 -4.24 5.48 84.86 0.47 -3.78 16 3 Si 0.98 47.60 29.55 68.60 2.03 49.63 16 4 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 5 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 6 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.24 -13.70 10.26 84.03 0.86 -12.84 16 8 H 0.09 4.78 7.83 -2.92 -0.02 4.76 16 9 N -0.62 -32.47 3.39 -697.63 -2.36 -34.83 16 10 C 0.14 5.04 6.68 86.37 0.58 5.62 16 11 C -0.09 -2.52 3.91 -9.31 -0.04 -2.55 16 12 H 0.14 2.69 8.14 -2.39 -0.02 2.67 16 13 C -0.11 -2.28 6.23 31.87 0.20 -2.09 16 14 C 0.08 1.71 5.59 86.88 0.49 2.20 16 15 N -0.60 -20.26 2.85 -788.63 -2.25 -22.50 16 16 C 0.59 22.83 7.60 86.40 0.66 23.49 16 17 O -0.55 -26.89 15.39 -4.36 -0.07 -26.96 16 18 C -0.32 -9.53 6.41 24.10 0.15 -9.37 16 19 S 0.32 4.77 18.79 -56.49 -1.06 3.71 16 20 C 0.03 0.44 12.20 130.61 1.59 2.03 16 21 N -0.50 -12.72 10.50 -192.58 -2.02 -14.74 16 22 C 0.17 5.26 7.41 84.48 0.63 5.89 16 23 Cl 0.00 -0.05 27.41 -2.72 -0.07 -0.12 16 24 C 0.12 4.73 3.86 46.02 0.18 4.91 16 25 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 26 C 0.18 9.69 4.86 86.75 0.42 10.12 16 27 H 0.24 15.58 8.31 -92.71 -0.77 14.81 16 28 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 29 H 0.04 1.44 7.74 -2.39 -0.02 1.42 16 30 H 0.14 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.06 1.55 7.88 -2.39 -0.02 1.53 16 32 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.08 1.46 5.02 -16.47 -0.08 1.38 16 34 H 0.26 0.77 8.06 -2.91 -0.02 0.75 16 35 H -0.02 -1.37 7.94 -2.39 -0.02 -1.39 16 36 H 0.04 2.49 6.21 -2.39 -0.01 2.48 16 Total: -1.00 -87.91 319.59 1.65 -86.26 By element: Atomic # 1 Polarization: -3.45 SS G_CDS: 1.05 Total: -2.39 kcal Atomic # 6 Polarization: 17.43 SS G_CDS: 6.18 Total: 23.61 kcal Atomic # 7 Polarization: -127.32 SS G_CDS: -6.41 Total: -133.74 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -0.07 Total: -26.96 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.63 kcal Atomic # 16 Polarization: 4.77 SS G_CDS: -1.06 Total: 3.71 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -0.07 Total: -0.12 kcal Total: -87.91 1.65 -86.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076579667.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.683 kcal (2) G-P(sol) polarization free energy of solvation -87.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds