Wall clock time and date at job start Tue Mar 31 2020 15:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86794 * 119.99928 * 2 1 4 4 H 1.48494 * 109.47392 * 269.99768 * 3 2 1 5 5 H 1.48503 * 109.47029 * 29.99949 * 3 2 1 6 6 H 1.48503 * 109.46976 * 149.99976 * 3 2 1 7 7 C 1.38811 * 119.99897 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00097 * 193.78407 * 7 2 1 9 9 N 1.36946 * 119.99910 * 13.78303 * 7 2 1 10 10 C 1.46617 * 119.88871 * 205.09048 * 9 7 2 11 11 C 1.53100 * 108.05180 * 237.35281 * 10 9 7 12 12 C 1.53016 * 109.44351 * 300.99929 * 11 10 9 13 13 H 1.08996 * 113.42486 * 275.03605 * 12 11 10 14 14 C 1.54655 * 110.83527 * 143.89376 * 12 11 10 15 15 N 1.47810 * 85.79035 * 270.22978 * 14 12 11 16 16 C 1.34776 * 135.01209 * 153.79175 * 15 14 12 17 17 O 1.21642 * 119.99809 * 180.02562 * 16 15 14 18 18 C 1.47145 * 120.00161 * 0.02562 * 16 15 14 19 19 N 1.30561 * 125.52696 * 180.02562 * 18 16 15 20 20 C 1.30665 * 115.93446 * 180.02562 * 19 18 16 21 21 C 1.34438 * 115.73526 * 359.97438 * 20 19 18 22 22 Cl 1.73597 * 125.46364 * 180.02562 * 21 20 19 23 23 S 1.71072 * 109.07522 * 359.73640 * 21 20 19 24 24 C 1.46826 * 89.97504 * 333.80595 * 15 14 12 25 25 H 1.08997 * 111.56424 * 274.48276 * 24 15 14 26 26 C 1.45771 * 119.95757 * 25.14610 * 9 7 2 27 27 H 0.96998 * 119.99819 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.75476 * 117.70162 * 10 9 7 29 29 H 1.09004 * 109.75417 * 357.01032 * 10 9 7 30 30 H 1.09000 * 109.47280 * 60.98426 * 11 10 9 31 31 H 1.08994 * 109.47741 * 181.00246 * 11 10 9 32 32 H 1.08998 * 113.82193 * 24.44156 * 14 12 11 33 33 H 1.08993 * 113.82066 * 156.01517 * 14 12 11 34 34 H 1.07995 * 122.13250 * 180.02562 * 20 19 18 35 35 H 1.09006 * 108.70116 * 19.74360 * 26 9 7 36 36 H 1.09000 * 108.69672 * 261.73861 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0670 -1.2156 0.2234 9 7 1.3551 -2.3712 -0.2815 10 6 1.8770 -3.6427 0.2290 11 6 2.1245 -4.5677 -0.9656 12 6 0.8139 -4.7785 -1.7268 13 1 0.1972 -5.5772 -1.3148 14 6 1.0705 -4.8694 -3.2492 15 7 0.8906 -3.4023 -3.2569 16 6 1.3215 -2.3932 -4.0396 17 8 0.9980 -1.2479 -3.7883 18 6 2.1833 -2.6770 -5.1980 19 7 2.6610 -1.7864 -6.0245 20 6 3.4083 -2.2474 -6.9922 21 6 3.5867 -3.5798 -7.0078 22 17 4.5281 -4.4563 -8.1736 23 16 2.7439 -4.2722 -5.6900 24 6 0.0482 -3.4999 -2.0584 25 1 -0.9905 -3.7086 -2.3147 26 6 0.1418 -2.3490 -1.0891 27 1 -0.4850 0.8400 -0.0004 28 1 1.1489 -4.0963 0.9015 29 1 2.8124 -3.4699 0.7613 30 1 2.8613 -4.1151 -1.6291 31 1 2.4969 -5.5284 -0.6103 32 1 2.0797 -5.1905 -3.5071 33 1 0.2973 -5.4106 -3.7944 34 1 3.8549 -1.5994 -7.7317 35 1 0.1129 -1.4154 -1.6510 36 1 -0.7212 -2.3807 -0.4240 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084515538.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:04 Heat of formation + Delta-G solvation = 84.674640 kcal Electronic energy + Delta-G solvation = -23837.797610 eV Core-core repulsion = 20284.581580 eV Total energy + Delta-G solvation = -3553.216031 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.055 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -40.65706 -39.87694 -37.59691 -37.09865 -35.26873 -32.23591 -30.74301 -30.22631 -29.13736 -27.16118 -26.01567 -23.96571 -23.35666 -21.62811 -21.10384 -19.60065 -19.04989 -17.76970 -17.07204 -16.39862 -15.99514 -15.85241 -15.22320 -15.07351 -14.32933 -14.05972 -13.81140 -13.57055 -13.45465 -13.30670 -12.90360 -12.55035 -12.39893 -12.28516 -12.00436 -11.59192 -11.36522 -11.05589 -10.73920 -10.65958 -10.53523 -10.28292 -10.21388 -9.91970 -9.85103 -9.70864 -9.68616 -9.13326 -9.07173 -8.34192 -8.32675 -6.62580 -5.66763 -3.09332 -0.03935 0.53516 1.23506 1.78585 2.24805 2.76491 3.42194 3.49845 3.55576 3.59798 4.08107 4.52551 4.62093 4.65416 4.84886 5.05961 5.23241 5.36203 5.38751 5.56839 5.58942 5.65524 5.77733 5.91671 6.04545 6.20612 6.30841 6.42384 6.50696 6.73487 6.94164 7.29211 7.44821 7.72506 7.91810 7.97647 8.42741 8.55893 9.33952 9.97446 10.44930 11.41598 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.015436 B = 0.004442 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.511340 B = 6301.274223 C = 7335.149748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.013 3.987 3 Si 0.900 3.100 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.256 4.256 8 H 0.064 0.936 9 N -0.585 5.585 10 C 0.147 3.853 11 C -0.121 4.121 12 C -0.103 4.103 13 H 0.094 0.906 14 C 0.083 3.917 15 N -0.625 5.625 16 C 0.608 3.392 17 O -0.468 6.468 18 C 0.033 3.967 19 N -0.396 5.396 20 C 0.050 3.950 21 C -0.220 4.220 22 Cl 0.005 6.995 23 S 0.220 5.780 24 C 0.131 3.869 25 H 0.081 0.919 26 C 0.162 3.838 27 H 0.253 0.747 28 H 0.022 0.978 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.185 0.815 35 H 0.107 0.893 36 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.169 -15.778 -12.575 20.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.186 4.186 3 Si 0.730 3.270 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.385 4.385 8 H 0.081 0.919 9 N -0.308 5.308 10 C 0.021 3.979 11 C -0.160 4.160 12 C -0.122 4.122 13 H 0.113 0.887 14 C -0.041 4.041 15 N -0.363 5.363 16 C 0.390 3.610 17 O -0.339 6.339 18 C -0.243 4.243 19 N -0.112 5.112 20 C -0.109 4.109 21 C -0.369 4.369 22 Cl 0.034 6.966 23 S 0.474 5.526 24 C 0.029 3.971 25 H 0.099 0.901 26 C 0.036 3.964 27 H 0.063 0.937 28 H 0.040 0.960 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.202 0.798 35 H 0.125 0.875 36 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.744 -15.313 -12.167 19.913 hybrid contribution 1.098 1.302 -1.266 2.123 sum 4.842 -14.011 -13.434 20.005 Atomic orbital electron populations 1.69985 1.05189 1.25409 1.54174 1.24925 0.95296 0.98147 1.00222 0.86330 0.78893 0.83909 0.77858 1.21174 1.21772 1.20660 1.19096 0.91561 0.84396 1.43484 0.91860 1.43503 1.28896 1.01788 1.56612 1.20746 0.97571 0.87214 0.92406 1.21910 0.94760 0.99667 0.99664 1.22847 0.98758 0.97677 0.92952 0.88746 1.23804 1.01217 0.81106 0.97958 1.49706 1.51582 1.05722 1.29282 1.16074 0.80399 0.84804 0.79702 1.90969 1.55289 1.19289 1.68368 1.27975 1.04422 0.90378 1.01574 1.66811 1.08138 1.34029 1.02201 1.21945 0.98984 0.91452 0.98519 1.26737 1.09373 0.97955 1.02872 1.98374 1.69395 1.74102 1.54767 1.84086 1.40370 1.11564 1.16614 1.22847 0.93253 0.97161 0.83861 0.90122 1.20200 0.89144 0.95918 0.91172 0.93700 0.96015 0.92430 0.92134 0.92365 0.90521 0.89315 0.79818 0.87514 0.94539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.10 10.91 55.49 0.61 -26.49 16 2 C 0.01 0.38 4.97 -17.43 -0.09 0.29 16 3 Si 0.90 23.38 29.58 -169.99 -5.03 18.35 16 4 H -0.28 -7.68 7.11 56.52 0.40 -7.28 16 5 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 6 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.26 -7.23 9.55 -15.06 -0.14 -7.37 16 8 H 0.06 1.77 7.84 -52.49 -0.41 1.36 16 9 N -0.59 -14.50 3.02 -175.00 -0.53 -15.03 16 10 C 0.15 2.89 6.47 -3.93 -0.03 2.86 16 11 C -0.12 -1.85 5.66 -26.67 -0.15 -2.00 16 12 C -0.10 -1.41 4.39 -89.97 -0.40 -1.80 16 13 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 14 C 0.08 0.98 6.75 -3.00 -0.02 0.96 16 15 N -0.62 -10.76 3.34 -175.36 -0.59 -11.35 16 16 C 0.61 12.28 7.97 -12.65 -0.10 12.18 16 17 O -0.47 -11.98 16.18 5.24 0.08 -11.89 16 18 C 0.03 0.56 7.44 -14.48 -0.11 0.45 16 19 N -0.40 -6.85 10.59 -11.50 -0.12 -6.97 16 20 C 0.05 0.66 11.21 -19.39 -0.22 0.44 16 21 C -0.22 -2.56 6.95 29.39 0.20 -2.35 16 22 Cl 0.01 0.05 29.30 -51.86 -1.52 -1.47 16 23 S 0.22 2.56 19.94 -107.50 -2.14 0.41 16 24 C 0.13 2.33 4.23 -69.59 -0.29 2.04 16 25 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 26 C 0.16 3.86 4.61 -5.56 -0.03 3.83 16 27 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 1.13 7.88 -51.93 -0.41 0.72 16 30 H 0.06 1.04 7.69 -51.93 -0.40 0.64 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.81 6.21 -51.93 -0.32 0.49 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.18 1.91 8.06 -52.49 -0.42 1.49 16 35 H 0.11 3.04 4.83 -51.93 -0.25 2.79 16 36 H 0.04 0.93 7.97 -51.93 -0.41 0.52 16 LS Contribution 323.88 15.07 4.88 4.88 Total: -1.00 -34.26 323.88 -9.60 -43.86 By element: Atomic # 1 Polarization: 0.04 SS G_CDS: -3.88 Total: -3.84 kcal Atomic # 6 Polarization: 10.90 SS G_CDS: -1.36 Total: 9.54 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: -0.63 Total: -59.84 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.08 Total: -11.89 kcal Atomic # 14 Polarization: 23.38 SS G_CDS: -5.03 Total: 18.35 kcal Atomic # 16 Polarization: 2.56 SS G_CDS: -2.14 Total: 0.41 kcal Atomic # 17 Polarization: 0.05 SS G_CDS: -1.52 Total: -1.47 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.26 -9.60 -43.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084515538.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.537 kcal (2) G-P(sol) polarization free energy of solvation -34.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds