Wall clock time and date at job start Tue Mar 31 2020 15:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86794 * 119.99928 * 2 1 4 4 H 1.48494 * 109.47392 * 269.99768 * 3 2 1 5 5 H 1.48503 * 109.47029 * 29.99949 * 3 2 1 6 6 H 1.48503 * 109.46976 * 149.99976 * 3 2 1 7 7 C 1.38811 * 119.99897 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00097 * 193.78407 * 7 2 1 9 9 N 1.36946 * 119.99910 * 13.78303 * 7 2 1 10 10 C 1.46617 * 119.88871 * 205.09048 * 9 7 2 11 11 C 1.53100 * 108.05180 * 237.35281 * 10 9 7 12 12 C 1.53016 * 109.44351 * 300.99929 * 11 10 9 13 13 H 1.08996 * 113.42486 * 275.03605 * 12 11 10 14 14 C 1.54655 * 110.83527 * 143.89376 * 12 11 10 15 15 N 1.47810 * 85.79035 * 270.22978 * 14 12 11 16 16 C 1.34776 * 135.01209 * 153.79175 * 15 14 12 17 17 O 1.21642 * 119.99809 * 180.02562 * 16 15 14 18 18 C 1.47145 * 120.00161 * 0.02562 * 16 15 14 19 19 N 1.30561 * 125.52696 * 180.02562 * 18 16 15 20 20 C 1.30665 * 115.93446 * 180.02562 * 19 18 16 21 21 C 1.34438 * 115.73526 * 359.97438 * 20 19 18 22 22 Cl 1.73597 * 125.46364 * 180.02562 * 21 20 19 23 23 S 1.71072 * 109.07522 * 359.73640 * 21 20 19 24 24 C 1.46826 * 89.97504 * 333.80595 * 15 14 12 25 25 H 1.08997 * 111.56424 * 274.48276 * 24 15 14 26 26 C 1.45771 * 119.95757 * 25.14610 * 9 7 2 27 27 H 0.96998 * 119.99819 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.75476 * 117.70162 * 10 9 7 29 29 H 1.09004 * 109.75417 * 357.01032 * 10 9 7 30 30 H 1.09000 * 109.47280 * 60.98426 * 11 10 9 31 31 H 1.08994 * 109.47741 * 181.00246 * 11 10 9 32 32 H 1.08998 * 113.82193 * 24.44156 * 14 12 11 33 33 H 1.08993 * 113.82066 * 156.01517 * 14 12 11 34 34 H 1.07995 * 122.13250 * 180.02562 * 20 19 18 35 35 H 1.09006 * 108.70116 * 19.74360 * 26 9 7 36 36 H 1.09000 * 108.69672 * 261.73861 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0670 -1.2156 0.2234 9 7 1.3551 -2.3712 -0.2815 10 6 1.8770 -3.6427 0.2290 11 6 2.1245 -4.5677 -0.9656 12 6 0.8139 -4.7785 -1.7268 13 1 0.1972 -5.5772 -1.3148 14 6 1.0705 -4.8694 -3.2492 15 7 0.8906 -3.4023 -3.2569 16 6 1.3215 -2.3932 -4.0396 17 8 0.9980 -1.2479 -3.7883 18 6 2.1833 -2.6770 -5.1980 19 7 2.6610 -1.7864 -6.0245 20 6 3.4083 -2.2474 -6.9922 21 6 3.5867 -3.5798 -7.0078 22 17 4.5281 -4.4563 -8.1736 23 16 2.7439 -4.2722 -5.6900 24 6 0.0482 -3.4999 -2.0584 25 1 -0.9905 -3.7086 -2.3147 26 6 0.1418 -2.3490 -1.0891 27 1 -0.4850 0.8400 -0.0004 28 1 1.1489 -4.0963 0.9015 29 1 2.8124 -3.4699 0.7613 30 1 2.8613 -4.1151 -1.6291 31 1 2.4969 -5.5284 -0.6103 32 1 2.0797 -5.1905 -3.5071 33 1 0.2973 -5.4106 -3.7944 34 1 3.8549 -1.5994 -7.7317 35 1 0.1129 -1.4154 -1.6510 36 1 -0.7212 -2.3807 -0.4240 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084515538.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:03 Heat of formation + Delta-G solvation = 59.569062 kcal Electronic energy + Delta-G solvation = -23838.886270 eV Core-core repulsion = 20284.581580 eV Total energy + Delta-G solvation = -3554.304690 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.055 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.96863 -40.99292 -39.03772 -38.02057 -37.05571 -34.02005 -32.08305 -31.85651 -30.47470 -28.77029 -27.19129 -25.74882 -24.74947 -22.90873 -22.60726 -20.76881 -20.22803 -19.43340 -18.37501 -17.82143 -17.43923 -17.30172 -16.61774 -16.29906 -16.01018 -15.55078 -15.21331 -15.02312 -14.90380 -14.61743 -14.45579 -14.02973 -13.64663 -13.41621 -13.26416 -13.17494 -12.80160 -12.72581 -12.47518 -12.23206 -12.09611 -11.99120 -11.79847 -11.48917 -11.47828 -11.09153 -10.71222 -10.65617 -10.41820 -10.11436 -9.66159 -8.66470 -7.85192 -5.28002 -1.12984 -0.47162 0.19617 0.84048 1.12483 1.34204 1.43457 1.45183 1.52201 2.08592 2.48204 3.00429 3.29513 3.41405 3.58031 3.74034 3.86413 3.94826 4.11874 4.34930 4.48221 4.51595 4.66214 4.68257 4.71142 4.78964 4.93339 5.10427 5.12869 5.31878 5.42611 5.58079 5.71307 5.84852 6.28311 6.40910 6.65508 7.03076 7.20247 7.97649 8.35266 9.18977 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.015436 B = 0.004442 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.511340 B = 6301.274223 C = 7335.149748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.043 4.043 3 Si 0.949 3.051 4 H -0.306 1.306 5 H -0.288 1.288 6 H -0.262 1.262 7 C -0.256 4.256 8 H 0.060 0.940 9 N -0.604 5.604 10 C 0.138 3.862 11 C -0.112 4.112 12 C -0.089 4.089 13 H 0.142 0.858 14 C 0.093 3.907 15 N -0.628 5.628 16 C 0.598 3.402 17 O -0.552 6.552 18 C -0.023 4.023 19 N -0.438 5.438 20 C 0.035 3.965 21 C -0.214 4.214 22 Cl 0.035 6.965 23 S 0.330 5.670 24 C 0.116 3.884 25 H 0.105 0.895 26 C 0.174 3.826 27 H 0.244 0.756 28 H 0.033 0.967 29 H 0.050 0.950 30 H 0.040 0.960 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.136 0.864 34 H 0.204 0.796 35 H 0.052 0.948 36 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.710 -20.662 -14.049 25.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.238 4.238 3 Si 0.778 3.222 4 H -0.234 1.234 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.387 4.387 8 H 0.078 0.922 9 N -0.327 5.327 10 C 0.013 3.987 11 C -0.150 4.150 12 C -0.108 4.108 13 H 0.160 0.840 14 C -0.028 4.028 15 N -0.364 5.364 16 C 0.383 3.617 17 O -0.429 6.429 18 C -0.297 4.297 19 N -0.155 5.155 20 C -0.124 4.124 21 C -0.364 4.364 22 Cl 0.063 6.937 23 S 0.584 5.416 24 C 0.013 3.987 25 H 0.123 0.877 26 C 0.048 3.952 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.125 0.875 32 H 0.115 0.885 33 H 0.153 0.847 34 H 0.221 0.779 35 H 0.071 0.929 36 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges 5.310 -20.307 -13.615 25.019 hybrid contribution 0.727 2.630 -0.876 2.865 sum 6.037 -17.678 -14.491 23.642 Atomic orbital electron populations 1.70142 1.06237 1.25054 1.56193 1.25560 0.96008 1.00785 1.01482 0.85539 0.78841 0.81193 0.76602 1.23410 1.21388 1.18633 1.19385 0.91635 0.86096 1.41541 0.92178 1.43755 1.28861 1.02678 1.57454 1.21006 0.97168 0.85868 0.94647 1.21816 0.95478 1.00425 0.97331 1.22875 0.97564 0.95932 0.94403 0.83995 1.24167 1.04023 0.77614 0.96950 1.49893 1.50502 1.07905 1.28128 1.16660 0.80250 0.84355 0.80452 1.90911 1.58567 1.22487 1.70941 1.27288 1.06657 0.93932 1.01816 1.66755 1.09097 1.36356 1.03324 1.22195 0.99120 0.92635 0.98403 1.27007 1.08332 0.97947 1.03078 1.98399 1.68464 1.73185 1.53616 1.83408 1.37529 1.06213 1.14491 1.22853 0.95720 0.96793 0.83317 0.87731 1.19791 0.87730 0.96573 0.91155 0.94700 0.94870 0.93104 0.94146 0.87474 0.88541 0.84652 0.77892 0.92921 0.97829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.62 10.91 21.65 0.24 -59.38 16 2 C -0.04 -2.63 4.97 84.86 0.42 -2.21 16 3 Si 0.95 50.64 29.58 68.60 2.03 52.67 16 4 H -0.31 -17.23 7.11 99.48 0.71 -16.52 16 5 H -0.29 -15.01 7.11 99.48 0.71 -14.31 16 6 H -0.26 -12.97 7.11 99.48 0.71 -12.27 16 7 C -0.26 -15.09 9.55 84.03 0.80 -14.29 16 8 H 0.06 3.49 7.84 -2.91 -0.02 3.46 16 9 N -0.60 -30.84 3.02 -707.57 -2.14 -32.98 16 10 C 0.14 5.25 6.47 86.39 0.56 5.81 16 11 C -0.11 -3.00 5.66 30.63 0.17 -2.82 16 12 C -0.09 -2.02 4.39 -10.31 -0.05 -2.06 16 13 H 0.14 2.06 8.14 -2.39 -0.02 2.04 16 14 C 0.09 1.74 6.75 86.34 0.58 2.32 16 15 N -0.63 -21.01 3.34 -826.94 -2.77 -23.77 16 16 C 0.60 25.08 7.97 86.58 0.69 25.77 16 17 O -0.55 -30.80 16.18 -4.16 -0.07 -30.86 16 18 C -0.02 -0.79 7.44 87.22 0.65 -0.14 16 19 N -0.44 -15.48 10.59 -190.29 -2.02 -17.49 16 20 C 0.04 0.89 11.21 84.00 0.94 1.84 16 21 C -0.21 -4.31 6.95 66.95 0.47 -3.85 16 22 Cl 0.03 0.52 29.30 -2.72 -0.08 0.44 16 23 S 0.33 6.46 19.94 -56.49 -1.13 5.33 16 24 C 0.12 4.03 4.23 43.74 0.19 4.21 16 25 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 26 C 0.17 8.71 4.61 85.79 0.40 9.10 16 27 H 0.24 15.41 8.31 -92.71 -0.77 14.64 16 28 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 29 H 0.05 1.95 7.88 -2.39 -0.02 1.94 16 30 H 0.04 1.26 7.69 -2.39 -0.02 1.24 16 31 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.10 1.45 6.21 -2.39 -0.01 1.43 16 33 H 0.14 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.20 3.99 8.06 -2.91 -0.02 3.96 16 35 H 0.05 3.24 4.83 -2.38 -0.01 3.23 16 36 H 0.00 0.21 7.97 -2.39 -0.02 0.19 16 Total: -1.00 -86.74 323.88 1.01 -85.73 By element: Atomic # 1 Polarization: -4.50 SS G_CDS: 1.12 Total: -3.37 kcal Atomic # 6 Polarization: 17.87 SS G_CDS: 5.82 Total: 23.69 kcal Atomic # 7 Polarization: -126.94 SS G_CDS: -6.68 Total: -133.62 kcal Atomic # 8 Polarization: -30.80 SS G_CDS: -0.07 Total: -30.86 kcal Atomic # 14 Polarization: 50.64 SS G_CDS: 2.03 Total: 52.67 kcal Atomic # 16 Polarization: 6.46 SS G_CDS: -1.13 Total: 5.33 kcal Atomic # 17 Polarization: 0.52 SS G_CDS: -0.08 Total: 0.44 kcal Total: -86.74 1.01 -85.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084515538.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.296 kcal (2) G-P(sol) polarization free energy of solvation -86.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds