Wall clock time and date at job start Tue Mar 31 2020 15:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86794 * 119.99928 * 2 1 4 4 H 1.48494 * 109.47392 * 269.99768 * 3 2 1 5 5 H 1.48503 * 109.47029 * 29.99949 * 3 2 1 6 6 H 1.48503 * 109.46976 * 149.99976 * 3 2 1 7 7 C 1.38811 * 119.99897 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00097 * 193.78407 * 7 2 1 9 9 N 1.36946 * 119.99910 * 13.78303 * 7 2 1 10 10 C 1.46617 * 119.88871 * 205.09048 * 9 7 2 11 11 C 1.53100 * 108.05180 * 237.35281 * 10 9 7 12 12 C 1.53016 * 109.44351 * 300.99929 * 11 10 9 13 13 H 1.08996 * 113.42486 * 275.03605 * 12 11 10 14 14 C 1.54655 * 110.83527 * 143.89376 * 12 11 10 15 15 N 1.47810 * 85.79035 * 270.22978 * 14 12 11 16 16 C 1.34776 * 135.01209 * 153.79175 * 15 14 12 17 17 O 1.21632 * 119.99824 * 180.02562 * 16 15 14 18 18 C 1.47217 * 120.00069 * 0.02562 * 16 15 14 19 19 N 1.30603 * 125.53463 * 359.70258 * 18 16 15 20 20 C 1.30740 * 115.89511 * 179.77944 * 19 18 16 21 21 Cl 1.73606 * 122.11699 * 180.21686 * 20 19 18 22 22 C 1.34329 * 115.75766 * 0.51356 * 20 19 18 23 23 S 1.71065 * 109.09639 * 359.72645 * 22 20 19 24 24 C 1.46826 * 89.97504 * 333.80595 * 15 14 12 25 25 H 1.08997 * 111.56424 * 274.48276 * 24 15 14 26 26 C 1.45771 * 119.95757 * 25.14610 * 9 7 2 27 27 H 0.96998 * 119.99819 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.75476 * 117.70162 * 10 9 7 29 29 H 1.09004 * 109.75417 * 357.01032 * 10 9 7 30 30 H 1.09000 * 109.47280 * 60.98426 * 11 10 9 31 31 H 1.08994 * 109.47741 * 181.00246 * 11 10 9 32 32 H 1.08998 * 113.82193 * 24.44156 * 14 12 11 33 33 H 1.08993 * 113.82066 * 156.01517 * 14 12 11 34 34 H 1.07999 * 125.44976 * 179.70476 * 22 20 19 35 35 H 1.09006 * 108.70116 * 19.74360 * 26 9 7 36 36 H 1.09000 * 108.69672 * 261.73861 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0670 -1.2156 0.2234 9 7 1.3551 -2.3712 -0.2815 10 6 1.8770 -3.6427 0.2290 11 6 2.1245 -4.5677 -0.9656 12 6 0.8139 -4.7785 -1.7268 13 1 0.1972 -5.5772 -1.3148 14 6 1.0705 -4.8694 -3.2492 15 7 0.8906 -3.4023 -3.2569 16 6 1.3215 -2.3932 -4.0396 17 8 0.9981 -1.2480 -3.7883 18 6 2.1837 -2.6772 -5.1986 19 7 2.5997 -3.8602 -5.5634 20 6 3.3568 -3.8958 -6.6287 21 17 3.9941 -5.3826 -7.2589 22 6 3.6154 -2.7084 -7.2010 23 16 2.8277 -1.4761 -6.3137 24 6 0.0482 -3.4999 -2.0584 25 1 -0.9905 -3.7086 -2.3147 26 6 0.1418 -2.3490 -1.0891 27 1 -0.4850 0.8400 -0.0004 28 1 1.1489 -4.0963 0.9015 29 1 2.8124 -3.4699 0.7613 30 1 2.8613 -4.1151 -1.6291 31 1 2.4969 -5.5284 -0.6103 32 1 2.0797 -5.1905 -3.5071 33 1 0.2973 -5.4106 -3.7944 34 1 4.2236 -2.5560 -8.0804 35 1 0.1129 -1.4154 -1.6510 36 1 -0.7212 -2.3807 -0.4240 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084606921.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:42 Heat of formation + Delta-G solvation = 81.815564 kcal Electronic energy + Delta-G solvation = -23925.511060 eV Core-core repulsion = 20372.171050 eV Total energy + Delta-G solvation = -3553.340009 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.055 amu Computer time = 8.87 seconds Orbital eigenvalues (eV) -40.60543 -39.73135 -37.65171 -36.70417 -35.18486 -32.17533 -30.96425 -30.13838 -28.90376 -27.02232 -26.16940 -23.84295 -23.06379 -21.76213 -20.88664 -19.76376 -18.61560 -17.78069 -17.14020 -16.20335 -15.89149 -15.64279 -15.36306 -15.14489 -14.24131 -13.85390 -13.72075 -13.46090 -13.29688 -13.15342 -12.68466 -12.35246 -12.24472 -11.90289 -11.80402 -11.48294 -11.26116 -11.11114 -10.68323 -10.67053 -10.47408 -10.38938 -10.16639 -9.95302 -9.87069 -9.80173 -9.68897 -9.14794 -8.93662 -8.32518 -8.18148 -6.59646 -5.65502 -3.07682 0.05029 0.84344 1.11161 2.05231 2.09185 3.19881 3.41988 3.47938 3.53658 3.55173 4.09756 4.60117 4.71211 4.75409 4.82260 5.21941 5.30235 5.42694 5.49781 5.58449 5.74202 5.81499 5.94019 6.14163 6.17567 6.30295 6.42939 6.51215 6.60072 6.80851 7.02666 7.08031 7.48025 7.75913 7.93293 8.10799 8.46278 8.57332 9.35474 9.99287 10.47810 11.42770 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.014350 B = 0.004771 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.688476 B = 5867.150577 C = 7028.253061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.011 3.989 3 Si 0.900 3.100 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.253 4.253 8 H 0.063 0.937 9 N -0.586 5.586 10 C 0.147 3.853 11 C -0.117 4.117 12 C -0.113 4.113 13 H 0.090 0.910 14 C 0.107 3.893 15 N -0.603 5.603 16 C 0.610 3.390 17 O -0.502 6.502 18 C 0.022 3.978 19 N -0.424 5.424 20 C 0.110 3.890 21 Cl -0.014 7.014 22 C -0.286 4.286 23 S 0.289 5.711 24 C 0.127 3.873 25 H 0.079 0.921 26 C 0.163 3.837 27 H 0.252 0.748 28 H 0.021 0.979 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.191 0.809 35 H 0.106 0.894 36 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.555 -10.740 -14.049 18.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.188 4.188 3 Si 0.730 3.270 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.382 4.382 8 H 0.081 0.919 9 N -0.308 5.308 10 C 0.020 3.980 11 C -0.157 4.157 12 C -0.132 4.132 13 H 0.108 0.892 14 C -0.016 4.016 15 N -0.338 5.338 16 C 0.393 3.607 17 O -0.376 6.376 18 C -0.254 4.254 19 N -0.143 5.143 20 C -0.055 4.055 21 Cl 0.014 6.986 22 C -0.429 4.429 23 S 0.544 5.456 24 C 0.024 3.976 25 H 0.096 0.904 26 C 0.037 3.963 27 H 0.062 0.938 28 H 0.039 0.961 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.208 0.792 35 H 0.124 0.876 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 4.131 -9.248 -13.825 17.138 hybrid contribution 0.956 -0.315 -0.803 1.288 sum 5.087 -9.563 -14.629 18.203 Atomic orbital electron populations 1.69998 1.05161 1.25292 1.54364 1.24928 0.95285 0.98078 1.00470 0.86328 0.78931 0.84000 0.77728 1.21317 1.21798 1.20672 1.19110 0.91541 0.84436 1.43152 0.91911 1.43505 1.28899 1.01767 1.56648 1.20758 0.97421 0.87250 0.92529 1.21863 0.94955 0.99435 0.99418 1.22890 0.98520 0.97427 0.94397 0.89187 1.23606 1.02328 0.80136 0.95533 1.49566 1.49710 1.06610 1.27905 1.16117 0.80159 0.84708 0.79679 1.90966 1.57466 1.19327 1.69851 1.27991 1.04460 0.90540 1.02422 1.66360 1.10711 1.24790 1.12449 1.20404 1.01380 0.88986 0.94766 1.98391 1.84010 1.32018 1.84154 1.26580 1.10706 0.96448 1.09147 1.84299 1.37161 1.08025 1.16085 1.22880 0.93297 0.97255 0.84142 0.90362 1.20185 0.89045 0.95916 0.91148 0.93760 0.96104 0.92559 0.92129 0.92607 0.89487 0.90358 0.79162 0.87568 0.94720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.00 10.91 55.49 0.61 -26.40 16 2 C 0.01 0.32 4.97 -17.43 -0.09 0.23 16 3 Si 0.90 22.92 29.58 -169.99 -5.03 17.90 16 4 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.25 -7.15 9.55 -15.06 -0.14 -7.30 16 8 H 0.06 1.76 7.84 -52.49 -0.41 1.35 16 9 N -0.59 -14.80 3.02 -175.00 -0.53 -15.33 16 10 C 0.15 3.02 6.47 -3.93 -0.03 3.00 16 11 C -0.12 -1.98 5.66 -26.67 -0.15 -2.13 16 12 C -0.11 -1.75 4.39 -89.97 -0.40 -2.14 16 13 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 14 C 0.11 1.55 7.25 -3.00 -0.02 1.53 16 15 N -0.60 -11.20 3.34 -175.33 -0.59 -11.79 16 16 C 0.61 12.26 7.97 -12.61 -0.10 12.16 16 17 O -0.50 -12.06 16.05 5.25 0.08 -11.98 16 18 C 0.02 0.37 7.43 -14.43 -0.11 0.26 16 19 N -0.42 -6.41 8.95 -8.61 -0.08 -6.48 16 20 C 0.11 1.40 7.22 -19.40 -0.14 1.26 16 21 Cl -0.01 -0.15 29.20 -51.86 -1.51 -1.66 16 22 C -0.29 -3.07 10.93 29.35 0.32 -2.75 16 23 S 0.29 3.70 23.03 -107.50 -2.48 1.22 16 24 C 0.13 2.42 4.23 -69.59 -0.29 2.12 16 25 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 26 C 0.16 3.98 4.61 -5.56 -0.03 3.96 16 27 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 1.15 7.88 -51.93 -0.41 0.74 16 30 H 0.06 1.15 7.69 -51.93 -0.40 0.75 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.09 1.27 7.27 -51.93 -0.38 0.89 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.19 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.11 3.03 4.84 -51.93 -0.25 2.78 16 36 H 0.04 0.91 7.97 -51.93 -0.41 0.50 16 LS Contribution 326.64 15.07 4.92 4.92 Total: -1.00 -32.73 326.64 -9.70 -42.43 By element: Atomic # 1 Polarization: 0.91 SS G_CDS: -3.93 Total: -3.03 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: -1.17 Total: 10.20 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: -0.59 Total: -60.00 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.08 Total: -11.98 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.03 Total: 17.90 kcal Atomic # 16 Polarization: 3.70 SS G_CDS: -2.48 Total: 1.22 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -1.51 Total: -1.66 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.73 -9.70 -42.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084606921.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.248 kcal (2) G-P(sol) polarization free energy of solvation -32.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.87 seconds