Wall clock time and date at job start Tue Mar 31 2020 15:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86794 * 119.99928 * 2 1 4 4 H 1.48494 * 109.47392 * 269.99768 * 3 2 1 5 5 H 1.48503 * 109.47029 * 29.99949 * 3 2 1 6 6 H 1.48503 * 109.46976 * 149.99976 * 3 2 1 7 7 C 1.38811 * 119.99897 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00097 * 193.78407 * 7 2 1 9 9 N 1.36946 * 119.99910 * 13.78303 * 7 2 1 10 10 C 1.46617 * 119.88871 * 205.09048 * 9 7 2 11 11 C 1.53100 * 108.05180 * 237.35281 * 10 9 7 12 12 C 1.53016 * 109.44351 * 300.99929 * 11 10 9 13 13 H 1.08996 * 113.42486 * 275.03605 * 12 11 10 14 14 C 1.54655 * 110.83527 * 143.89376 * 12 11 10 15 15 N 1.47810 * 85.79035 * 270.22978 * 14 12 11 16 16 C 1.34776 * 135.01209 * 153.79175 * 15 14 12 17 17 O 1.21632 * 119.99824 * 180.02562 * 16 15 14 18 18 C 1.47217 * 120.00069 * 0.02562 * 16 15 14 19 19 N 1.30603 * 125.53463 * 359.70258 * 18 16 15 20 20 C 1.30740 * 115.89511 * 179.77944 * 19 18 16 21 21 Cl 1.73606 * 122.11699 * 180.21686 * 20 19 18 22 22 C 1.34329 * 115.75766 * 0.51356 * 20 19 18 23 23 S 1.71065 * 109.09639 * 359.72645 * 22 20 19 24 24 C 1.46826 * 89.97504 * 333.80595 * 15 14 12 25 25 H 1.08997 * 111.56424 * 274.48276 * 24 15 14 26 26 C 1.45771 * 119.95757 * 25.14610 * 9 7 2 27 27 H 0.96998 * 119.99819 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.75476 * 117.70162 * 10 9 7 29 29 H 1.09004 * 109.75417 * 357.01032 * 10 9 7 30 30 H 1.09000 * 109.47280 * 60.98426 * 11 10 9 31 31 H 1.08994 * 109.47741 * 181.00246 * 11 10 9 32 32 H 1.08998 * 113.82193 * 24.44156 * 14 12 11 33 33 H 1.08993 * 113.82066 * 156.01517 * 14 12 11 34 34 H 1.07999 * 125.44976 * 179.70476 * 22 20 19 35 35 H 1.09006 * 108.70116 * 19.74360 * 26 9 7 36 36 H 1.09000 * 108.69672 * 261.73861 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0670 -1.2156 0.2234 9 7 1.3551 -2.3712 -0.2815 10 6 1.8770 -3.6427 0.2290 11 6 2.1245 -4.5677 -0.9656 12 6 0.8139 -4.7785 -1.7268 13 1 0.1972 -5.5772 -1.3148 14 6 1.0705 -4.8694 -3.2492 15 7 0.8906 -3.4023 -3.2569 16 6 1.3215 -2.3932 -4.0396 17 8 0.9981 -1.2480 -3.7883 18 6 2.1837 -2.6772 -5.1986 19 7 2.5997 -3.8602 -5.5634 20 6 3.3568 -3.8958 -6.6287 21 17 3.9941 -5.3826 -7.2589 22 6 3.6154 -2.7084 -7.2010 23 16 2.8277 -1.4761 -6.3137 24 6 0.0482 -3.4999 -2.0584 25 1 -0.9905 -3.7086 -2.3147 26 6 0.1418 -2.3490 -1.0891 27 1 -0.4850 0.8400 -0.0004 28 1 1.1489 -4.0963 0.9015 29 1 2.8124 -3.4699 0.7613 30 1 2.8613 -4.1151 -1.6291 31 1 2.4969 -5.5284 -0.6103 32 1 2.0797 -5.1905 -3.5071 33 1 0.2973 -5.4106 -3.7944 34 1 4.2236 -2.5560 -8.0804 35 1 0.1129 -1.4154 -1.6510 36 1 -0.7212 -2.3807 -0.4240 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084606921.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:38 Heat of formation + Delta-G solvation = 59.578897 kcal Electronic energy + Delta-G solvation = -23926.475314 eV Core-core repulsion = 20372.171050 eV Total energy + Delta-G solvation = -3554.304264 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.055 amu Computer time = 3.37 seconds Orbital eigenvalues (eV) -41.96830 -40.85199 -39.16070 -37.61969 -37.02034 -33.99995 -32.20609 -31.87704 -30.33002 -28.69552 -27.36011 -25.68842 -24.57649 -23.03409 -22.45223 -21.00976 -19.77929 -19.43115 -18.55590 -17.68908 -17.40083 -17.11482 -16.64331 -16.43532 -16.02112 -15.54263 -15.06835 -14.95869 -14.80538 -14.54488 -14.27139 -13.97808 -13.54091 -13.21129 -13.17388 -12.76618 -12.74987 -12.68076 -12.41577 -12.20491 -12.15041 -11.98002 -11.79107 -11.65480 -11.48574 -11.07677 -10.96017 -10.78426 -10.43595 -9.99467 -9.58622 -8.65714 -7.82693 -5.26560 -1.01928 -0.17148 0.10337 1.01102 1.09028 1.38955 1.45175 1.49581 1.87445 2.04178 2.50849 2.92976 3.31448 3.45357 3.67346 3.73255 3.92132 3.98522 4.13955 4.31578 4.43891 4.52920 4.59229 4.69400 4.74632 4.89583 4.92685 5.07425 5.12635 5.31076 5.41753 5.58963 5.69356 5.83812 6.02536 6.42318 6.71205 7.01110 7.21328 7.97125 8.37336 9.21986 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.014350 B = 0.004771 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.688476 B = 5867.150577 C = 7028.253061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.043 4.043 3 Si 0.954 3.046 4 H -0.296 1.296 5 H -0.290 1.290 6 H -0.265 1.265 7 C -0.258 4.258 8 H 0.060 0.940 9 N -0.603 5.603 10 C 0.140 3.860 11 C -0.106 4.106 12 C -0.100 4.100 13 H 0.132 0.868 14 C 0.122 3.878 15 N -0.611 5.611 16 C 0.601 3.399 17 O -0.563 6.563 18 C -0.025 4.025 19 N -0.421 5.421 20 C 0.085 3.915 21 Cl 0.004 6.996 22 C -0.249 4.249 23 S 0.314 5.686 24 C 0.116 3.884 25 H 0.099 0.901 26 C 0.177 3.823 27 H 0.245 0.755 28 H 0.032 0.968 29 H 0.051 0.949 30 H 0.036 0.964 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.110 0.890 34 H 0.232 0.768 35 H 0.059 0.941 36 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.170 -13.350 -15.848 21.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.238 4.238 3 Si 0.783 3.217 4 H -0.224 1.224 5 H -0.216 1.216 6 H -0.190 1.190 7 C -0.389 4.389 8 H 0.077 0.923 9 N -0.327 5.327 10 C 0.015 3.985 11 C -0.145 4.145 12 C -0.118 4.118 13 H 0.150 0.850 14 C 0.000 4.000 15 N -0.344 5.344 16 C 0.387 3.613 17 O -0.442 6.442 18 C -0.299 4.299 19 N -0.141 5.141 20 C -0.079 4.079 21 Cl 0.032 6.968 22 C -0.391 4.391 23 S 0.568 5.432 24 C 0.012 3.988 25 H 0.117 0.883 26 C 0.051 3.949 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.117 0.883 32 H 0.109 0.891 33 H 0.128 0.872 34 H 0.248 0.752 35 H 0.077 0.923 36 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges 5.769 -11.945 -15.610 20.485 hybrid contribution 0.543 0.436 -0.320 0.766 sum 6.311 -11.509 -15.930 20.641 Atomic orbital electron populations 1.70165 1.06358 1.25196 1.56014 1.25612 0.96035 1.00929 1.01257 0.85464 0.78539 0.80674 0.77053 1.22369 1.21597 1.18970 1.19384 0.91613 0.85985 1.41891 0.92251 1.43747 1.28889 1.02628 1.57414 1.20977 0.97133 0.86052 0.94362 1.21734 0.95359 1.00100 0.97291 1.22917 0.97543 0.96120 0.95268 0.84996 1.23738 1.03665 0.77667 0.94880 1.49779 1.49084 1.08353 1.27231 1.16600 0.80101 0.84197 0.80408 1.90920 1.59905 1.21567 1.71792 1.27258 1.06987 0.92314 1.03346 1.66271 1.10398 1.24445 1.13021 1.20607 1.02053 0.90416 0.94851 1.98399 1.83675 1.30967 1.83731 1.27066 1.08367 0.94906 1.08780 1.84265 1.36278 1.07731 1.14904 1.22836 0.95381 0.96832 0.83763 0.88319 1.19784 0.87690 0.96427 0.91021 0.94589 0.95039 0.93025 0.94521 0.88335 0.89084 0.87179 0.75157 0.92296 0.97912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.68 10.91 21.65 0.24 -58.44 16 2 C -0.04 -2.58 4.97 84.86 0.42 -2.15 16 3 Si 0.95 48.86 29.58 68.60 2.03 50.89 16 4 H -0.30 -15.51 7.11 99.48 0.71 -14.80 16 5 H -0.29 -14.61 7.11 99.48 0.71 -13.90 16 6 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 7 C -0.26 -15.13 9.55 84.03 0.80 -14.33 16 8 H 0.06 3.43 7.84 -2.91 -0.02 3.40 16 9 N -0.60 -31.38 3.02 -707.57 -2.14 -33.52 16 10 C 0.14 5.66 6.47 86.39 0.56 6.22 16 11 C -0.11 -3.32 5.66 30.63 0.17 -3.14 16 12 C -0.10 -2.78 4.39 -10.31 -0.05 -2.82 16 13 H 0.13 2.69 8.14 -2.39 -0.02 2.67 16 14 C 0.12 3.18 7.25 86.34 0.63 3.81 16 15 N -0.61 -22.56 3.34 -826.87 -2.76 -25.33 16 16 C 0.60 24.89 7.97 86.60 0.69 25.58 16 17 O -0.56 -28.81 16.05 -4.13 -0.07 -28.88 16 18 C -0.02 -0.81 7.43 87.24 0.65 -0.16 16 19 N -0.42 -11.98 8.95 -181.16 -1.62 -13.60 16 20 C 0.09 1.94 7.22 83.96 0.61 2.55 16 21 Cl 0.00 0.08 29.20 -2.72 -0.08 0.00 16 22 C -0.25 -4.50 10.93 66.93 0.73 -3.77 16 23 S 0.31 7.66 23.03 -56.49 -1.30 6.36 16 24 C 0.12 4.36 4.23 43.74 0.19 4.54 16 25 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 26 C 0.18 9.04 4.61 85.79 0.40 9.43 16 27 H 0.24 15.13 8.31 -92.71 -0.77 14.36 16 28 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 29 H 0.05 2.09 7.88 -2.39 -0.02 2.07 16 30 H 0.04 1.33 7.69 -2.39 -0.02 1.31 16 31 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.09 2.37 7.27 -2.39 -0.02 2.35 16 33 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.23 2.18 8.06 -2.91 -0.02 2.16 16 35 H 0.06 3.59 4.84 -2.38 -0.01 3.58 16 36 H 0.00 0.17 7.97 -2.39 -0.02 0.15 16 Total: -1.00 -77.69 326.64 1.21 -76.48 By element: Atomic # 1 Polarization: -0.82 SS G_CDS: 1.12 Total: 0.31 kcal Atomic # 6 Polarization: 19.94 SS G_CDS: 5.79 Total: 25.73 kcal Atomic # 7 Polarization: -124.61 SS G_CDS: -6.29 Total: -130.90 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.07 Total: -28.88 kcal Atomic # 14 Polarization: 48.86 SS G_CDS: 2.03 Total: 50.89 kcal Atomic # 16 Polarization: 7.66 SS G_CDS: -1.30 Total: 6.36 kcal Atomic # 17 Polarization: 0.08 SS G_CDS: -0.08 Total: 0.00 kcal Total: -77.69 1.21 -76.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084606921.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.064 kcal (2) G-P(sol) polarization free energy of solvation -77.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.37 seconds