Wall clock time and date at job start Tue Mar 31 2020 15:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99983 * 2 1 4 4 H 1.48506 * 109.47123 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47164 * 300.00047 * 3 2 1 6 6 H 1.48501 * 109.47418 * 59.99744 * 3 2 1 7 7 C 1.38811 * 120.00182 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00307 * 194.86587 * 7 2 1 9 9 N 1.36943 * 119.99746 * 14.87119 * 7 2 1 10 10 C 1.46615 * 119.89012 * 204.86459 * 9 7 2 11 11 C 1.53099 * 108.00872 * 237.32479 * 10 9 7 12 12 C 1.53015 * 109.44892 * 301.02510 * 11 10 9 13 13 H 1.08995 * 113.42198 * 274.22512 * 12 11 10 14 14 C 1.54654 * 110.83557 * 143.88517 * 12 11 10 15 15 N 1.47811 * 85.79401 * 270.23208 * 14 12 11 16 16 C 1.34775 * 135.01712 * 153.84343 * 15 14 12 17 17 O 1.21632 * 120.00291 * 180.02562 * 16 15 14 18 18 C 1.47249 * 119.99532 * 359.97438 * 16 15 14 19 19 C 1.35153 * 123.13443 * 179.73098 * 18 16 15 20 20 S 1.70934 * 108.86114 * 179.90785 * 19 18 16 21 21 C 1.70772 * 91.14544 * 0.30267 * 20 19 18 22 22 Cl 1.73602 * 124.72340 * 179.82074 * 21 20 19 23 23 N 1.28764 * 110.55183 * 359.82257 * 21 20 19 24 24 C 1.48762 * 89.95718 * 333.88090 * 15 14 12 25 25 H 1.08999 * 111.44838 * 274.71348 * 24 15 14 26 26 C 1.45325 * 120.52111 * 23.36960 * 9 7 2 27 27 H 0.96999 * 119.99711 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.75678 * 117.69938 * 10 9 7 29 29 H 1.09005 * 109.75400 * 356.94907 * 10 9 7 30 30 H 1.09006 * 109.47650 * 61.01521 * 11 10 9 31 31 H 1.09002 * 109.47553 * 181.02654 * 11 10 9 32 32 H 1.09001 * 113.82374 * 24.44889 * 14 12 11 33 33 H 1.09003 * 113.81897 * 155.89736 * 14 12 11 34 34 H 1.07998 * 125.57047 * 0.02562 * 19 18 16 35 35 H 1.08994 * 107.70137 * 20.00055 * 26 9 7 36 36 H 1.09001 * 109.95979 * 261.86887 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0631 -1.2177 0.2405 9 7 1.3600 -2.3683 -0.3033 10 6 1.8763 -3.6452 0.1994 11 6 2.1392 -4.5557 -1.0029 12 6 0.8385 -4.7577 -1.7832 13 1 0.2235 -5.5706 -1.3973 14 6 1.1145 -4.8301 -3.3032 15 7 0.9341 -3.3631 -3.2956 16 6 1.3738 -2.3445 -4.0609 17 8 1.0468 -1.2024 -3.7998 18 6 2.2508 -2.6143 -5.2125 19 6 2.7237 -1.6429 -6.0245 20 16 3.7003 -2.3583 -7.2313 21 6 3.4144 -3.9144 -6.5885 22 17 4.0654 -5.3872 -7.2372 23 7 2.6488 -3.8432 -5.5557 24 6 0.0668 -3.4771 -2.0923 25 1 -0.9674 -3.6872 -2.3649 26 6 0.1413 -2.3492 -1.0948 27 1 -0.4850 0.8401 -0.0004 28 1 1.1400 -4.1070 0.8571 29 1 2.8050 -3.4779 0.7449 30 1 2.8843 -4.0951 -1.6516 31 1 2.5075 -5.5206 -0.6544 32 1 2.1270 -5.1478 -3.5522 33 1 0.3495 -5.3667 -3.8644 34 1 2.5197 -0.5870 -5.9258 35 1 0.1113 -1.4026 -1.6342 36 1 -0.7285 -2.4032 -0.4400 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084759312.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:34 Heat of formation + Delta-G solvation = 80.200102 kcal Electronic energy + Delta-G solvation = -23976.099318 eV Core-core repulsion = 20422.689257 eV Total energy + Delta-G solvation = -3553.410061 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.055 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -40.61776 -39.56707 -37.48285 -37.01475 -35.14537 -32.09120 -30.62307 -30.11443 -29.18128 -26.92161 -25.69263 -23.82842 -23.15565 -21.93693 -20.88031 -19.77417 -18.95178 -17.61414 -16.57571 -16.50515 -15.81243 -15.73375 -15.18953 -15.10609 -14.15634 -14.07600 -13.71152 -13.41027 -13.24872 -13.12762 -12.68861 -12.28532 -12.14899 -12.02438 -11.85471 -11.71036 -11.42563 -11.03585 -10.66294 -10.63684 -10.42750 -10.22269 -10.13211 -9.91084 -9.81391 -9.77507 -9.63009 -9.06915 -9.04450 -8.30657 -8.05877 -6.59910 -5.64356 -3.05046 0.25750 0.46245 1.26237 1.58672 1.91581 3.28503 3.47796 3.54909 3.56308 3.70230 4.20856 4.61757 4.83797 4.92637 5.08698 5.31684 5.44986 5.49371 5.55203 5.61382 5.79695 5.87699 6.01215 6.18788 6.26700 6.34820 6.46583 6.57264 6.64485 6.83963 7.04869 7.07169 7.50338 7.78934 7.95161 8.27983 8.58766 8.66988 9.37385 10.01187 10.50103 11.43939 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.014712 B = 0.004607 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.747880 B = 6076.374279 C = 7199.366821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.009 3.991 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.292 1.292 7 C -0.250 4.250 8 H 0.065 0.935 9 N -0.583 5.583 10 C 0.144 3.856 11 C -0.115 4.115 12 C -0.114 4.114 13 H 0.086 0.914 14 C 0.110 3.890 15 N -0.614 5.614 16 C 0.608 3.392 17 O -0.511 6.511 18 C 0.039 3.961 19 C -0.224 4.224 20 S 0.263 5.737 21 C 0.041 3.959 22 Cl 0.026 6.974 23 N -0.422 5.422 24 C 0.129 3.871 25 H 0.076 0.924 26 C 0.164 3.836 27 H 0.252 0.748 28 H 0.020 0.980 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.199 0.801 35 H 0.107 0.893 36 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.873 -11.491 -15.517 20.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.189 4.189 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.219 1.219 7 C -0.379 4.379 8 H 0.082 0.918 9 N -0.305 5.305 10 C 0.017 3.983 11 C -0.155 4.155 12 C -0.133 4.133 13 H 0.104 0.896 14 C -0.013 4.013 15 N -0.349 5.349 16 C 0.392 3.608 17 O -0.386 6.386 18 C -0.096 4.096 19 C -0.365 4.365 20 S 0.515 5.485 21 C -0.263 4.263 22 Cl 0.053 6.947 23 N -0.141 5.141 24 C 0.026 3.974 25 H 0.094 0.906 26 C 0.037 3.963 27 H 0.062 0.938 28 H 0.038 0.962 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.216 0.784 35 H 0.125 0.875 36 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 6.133 -10.831 -16.092 20.344 hybrid contribution -0.132 0.717 0.498 0.883 sum 6.001 -10.114 -15.594 19.532 Atomic orbital electron populations 1.70008 1.05177 1.25169 1.54538 1.24907 0.95273 0.98092 1.00632 0.86251 0.79176 0.84378 0.77097 1.20534 1.21522 1.21902 1.19140 0.91874 0.84499 1.42416 0.91767 1.43441 1.28364 1.01578 1.57156 1.20785 0.97415 0.87509 0.92564 1.21837 0.95124 0.99265 0.99228 1.22872 0.98439 0.97412 0.94590 0.89591 1.23499 1.01967 0.80485 0.95326 1.50096 1.49444 1.06278 1.29058 1.16440 0.80070 0.84367 0.79908 1.90913 1.58058 1.20081 1.69504 1.20557 1.03093 0.85913 1.00022 1.26814 1.03112 1.07059 0.99560 1.82834 1.43055 0.95646 1.26998 1.27160 1.04433 0.95321 0.99431 1.98427 1.82713 1.30931 1.82627 1.66792 1.10353 1.24797 1.12147 1.23150 0.92885 0.96710 0.84633 0.90606 1.20045 0.88675 0.96684 0.90859 0.93830 0.96192 0.92622 0.92148 0.92769 0.89710 0.90817 0.78440 0.87524 0.94894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.47 10.92 55.49 0.61 -26.86 16 2 C 0.01 0.27 4.96 -17.43 -0.09 0.19 16 3 Si 0.90 23.30 29.58 -169.99 -5.03 18.27 16 4 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 6 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 7 C -0.25 -7.20 9.56 -15.06 -0.14 -7.34 16 8 H 0.06 1.83 7.84 -52.49 -0.41 1.42 16 9 N -0.58 -15.08 3.00 -175.36 -0.53 -15.60 16 10 C 0.14 3.04 6.44 -3.93 -0.03 3.01 16 11 C -0.12 -2.02 5.66 -26.67 -0.15 -2.17 16 12 C -0.11 -1.84 4.34 -89.97 -0.39 -2.24 16 13 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 14 C 0.11 1.68 7.14 -2.56 -0.02 1.67 16 15 N -0.61 -11.91 3.40 -172.76 -0.59 -12.49 16 16 C 0.61 12.72 7.98 -12.60 -0.10 12.62 16 17 O -0.51 -12.78 15.99 5.25 0.08 -12.70 16 18 C 0.04 0.65 6.69 -84.51 -0.57 0.09 16 19 C -0.22 -3.06 10.61 29.63 0.31 -2.75 16 20 S 0.26 2.57 22.96 -107.50 -2.47 0.10 16 21 C 0.04 0.49 7.98 51.48 0.41 0.90 16 22 Cl 0.03 0.25 29.33 -51.86 -1.52 -1.27 16 23 N -0.42 -6.33 8.67 -9.44 -0.08 -6.41 16 24 C 0.13 2.55 4.30 -68.08 -0.29 2.25 16 25 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 26 C 0.16 4.11 4.68 -5.80 -0.03 4.08 16 27 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 1.16 7.88 -51.93 -0.41 0.75 16 30 H 0.06 1.19 7.69 -51.93 -0.40 0.79 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.08 1.29 7.13 -51.93 -0.37 0.92 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.20 2.58 8.03 -52.49 -0.42 2.15 16 35 H 0.11 3.13 4.89 -51.93 -0.25 2.88 16 36 H 0.03 0.88 8.03 -51.93 -0.42 0.47 16 LS Contribution 326.06 15.07 4.91 4.91 Total: -1.00 -33.99 326.06 -9.62 -43.61 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -3.93 Total: -1.87 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: -1.08 Total: 10.32 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: -0.59 Total: -61.37 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.08 Total: -12.70 kcal Atomic # 14 Polarization: 23.30 SS G_CDS: -5.03 Total: 18.27 kcal Atomic # 16 Polarization: 2.57 SS G_CDS: -2.47 Total: 0.10 kcal Atomic # 17 Polarization: 0.25 SS G_CDS: -1.52 Total: -1.27 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.99 -9.62 -43.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084759312.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.810 kcal (2) G-P(sol) polarization free energy of solvation -33.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds