Wall clock time and date at job start Tue Mar 31 2020 15:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99983 * 2 1 4 4 H 1.48506 * 109.47123 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47164 * 300.00047 * 3 2 1 6 6 H 1.48501 * 109.47418 * 59.99744 * 3 2 1 7 7 C 1.38811 * 120.00182 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00307 * 194.86587 * 7 2 1 9 9 N 1.36943 * 119.99746 * 14.87119 * 7 2 1 10 10 C 1.46615 * 119.89012 * 204.86459 * 9 7 2 11 11 C 1.53099 * 108.00872 * 237.32479 * 10 9 7 12 12 C 1.53015 * 109.44892 * 301.02510 * 11 10 9 13 13 H 1.08995 * 113.42198 * 274.22512 * 12 11 10 14 14 C 1.54654 * 110.83557 * 143.88517 * 12 11 10 15 15 N 1.47811 * 85.79401 * 270.23208 * 14 12 11 16 16 C 1.34775 * 135.01712 * 153.84343 * 15 14 12 17 17 O 1.21632 * 120.00291 * 180.02562 * 16 15 14 18 18 C 1.47249 * 119.99532 * 359.97438 * 16 15 14 19 19 C 1.35153 * 123.13443 * 179.73098 * 18 16 15 20 20 S 1.70934 * 108.86114 * 179.90785 * 19 18 16 21 21 C 1.70772 * 91.14544 * 0.30267 * 20 19 18 22 22 Cl 1.73602 * 124.72340 * 179.82074 * 21 20 19 23 23 N 1.28764 * 110.55183 * 359.82257 * 21 20 19 24 24 C 1.48762 * 89.95718 * 333.88090 * 15 14 12 25 25 H 1.08999 * 111.44838 * 274.71348 * 24 15 14 26 26 C 1.45325 * 120.52111 * 23.36960 * 9 7 2 27 27 H 0.96999 * 119.99711 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.75678 * 117.69938 * 10 9 7 29 29 H 1.09005 * 109.75400 * 356.94907 * 10 9 7 30 30 H 1.09006 * 109.47650 * 61.01521 * 11 10 9 31 31 H 1.09002 * 109.47553 * 181.02654 * 11 10 9 32 32 H 1.09001 * 113.82374 * 24.44889 * 14 12 11 33 33 H 1.09003 * 113.81897 * 155.89736 * 14 12 11 34 34 H 1.07998 * 125.57047 * 0.02562 * 19 18 16 35 35 H 1.08994 * 107.70137 * 20.00055 * 26 9 7 36 36 H 1.09001 * 109.95979 * 261.86887 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0631 -1.2177 0.2405 9 7 1.3600 -2.3683 -0.3033 10 6 1.8763 -3.6452 0.1994 11 6 2.1392 -4.5557 -1.0029 12 6 0.8385 -4.7577 -1.7832 13 1 0.2235 -5.5706 -1.3973 14 6 1.1145 -4.8301 -3.3032 15 7 0.9341 -3.3631 -3.2956 16 6 1.3738 -2.3445 -4.0609 17 8 1.0468 -1.2024 -3.7998 18 6 2.2508 -2.6143 -5.2125 19 6 2.7237 -1.6429 -6.0245 20 16 3.7003 -2.3583 -7.2313 21 6 3.4144 -3.9144 -6.5885 22 17 4.0654 -5.3872 -7.2372 23 7 2.6488 -3.8432 -5.5557 24 6 0.0668 -3.4771 -2.0923 25 1 -0.9674 -3.6872 -2.3649 26 6 0.1413 -2.3492 -1.0948 27 1 -0.4850 0.8401 -0.0004 28 1 1.1400 -4.1070 0.8571 29 1 2.8050 -3.4779 0.7449 30 1 2.8843 -4.0951 -1.6516 31 1 2.5075 -5.5206 -0.6544 32 1 2.1270 -5.1478 -3.5522 33 1 0.3495 -5.3667 -3.8644 34 1 2.5197 -0.5870 -5.9258 35 1 0.1113 -1.4026 -1.6342 36 1 -0.7285 -2.4032 -0.4400 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084759312.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:33 Heat of formation + Delta-G solvation = 56.593457 kcal Electronic energy + Delta-G solvation = -23977.122979 eV Core-core repulsion = 20422.689257 eV Total energy + Delta-G solvation = -3554.433722 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.055 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.95991 -40.81738 -38.92158 -37.97209 -37.02593 -33.98319 -31.95867 -31.77029 -30.72605 -28.67571 -26.83623 -25.71228 -24.61923 -23.31452 -22.52876 -20.95114 -20.23125 -19.40950 -18.11643 -17.66861 -17.35675 -17.19445 -16.71876 -16.38560 -16.00247 -15.56349 -15.11865 -15.02234 -14.83558 -14.57680 -14.34129 -13.97623 -13.56069 -13.19351 -13.15477 -12.93402 -12.79170 -12.68732 -12.57357 -12.37480 -12.19950 -11.99685 -11.76792 -11.51730 -11.41393 -11.00323 -10.84815 -10.76774 -10.43478 -10.07459 -9.53531 -8.70299 -7.85498 -5.28031 -0.75317 -0.41907 0.27152 0.67633 0.73293 1.36103 1.41557 1.48461 1.89798 2.27591 2.48538 3.06058 3.30273 3.46818 3.71875 3.76918 3.97843 3.99531 4.17629 4.32119 4.42995 4.54996 4.60948 4.68877 4.73773 4.92110 4.93404 5.05427 5.13337 5.30681 5.39294 5.56575 5.68231 5.80804 6.04025 6.39865 6.82428 7.15423 7.18885 7.95012 8.35302 9.19437 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.014712 B = 0.004607 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.747880 B = 6076.374279 C = 7199.366821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.045 4.045 3 Si 0.956 3.044 4 H -0.268 1.268 5 H -0.300 1.300 6 H -0.284 1.284 7 C -0.256 4.256 8 H 0.062 0.938 9 N -0.601 5.601 10 C 0.137 3.863 11 C -0.103 4.103 12 C -0.101 4.101 13 H 0.128 0.872 14 C 0.126 3.874 15 N -0.621 5.621 16 C 0.594 3.406 17 O -0.574 6.574 18 C 0.010 3.990 19 C -0.240 4.240 20 S 0.382 5.618 21 C 0.024 3.976 22 Cl 0.048 6.952 23 N -0.441 5.441 24 C 0.115 3.885 25 H 0.095 0.905 26 C 0.178 3.822 27 H 0.245 0.755 28 H 0.031 0.969 29 H 0.052 0.948 30 H 0.035 0.965 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.195 0.805 35 H 0.057 0.943 36 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.698 -14.226 -17.426 23.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.241 4.241 3 Si 0.785 3.215 4 H -0.192 1.192 5 H -0.228 1.228 6 H -0.210 1.210 7 C -0.387 4.387 8 H 0.079 0.921 9 N -0.324 5.324 10 C 0.012 3.988 11 C -0.142 4.142 12 C -0.119 4.119 13 H 0.146 0.854 14 C 0.004 3.996 15 N -0.354 5.354 16 C 0.381 3.619 17 O -0.454 6.454 18 C -0.125 4.125 19 C -0.383 4.383 20 S 0.635 5.365 21 C -0.279 4.279 22 Cl 0.075 6.925 23 N -0.160 5.160 24 C 0.012 3.988 25 H 0.113 0.887 26 C 0.052 3.948 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.116 0.884 32 H 0.109 0.891 33 H 0.123 0.877 34 H 0.212 0.788 35 H 0.075 0.925 36 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges 8.001 -13.656 -18.012 23.978 hybrid contribution -0.609 1.513 1.002 1.914 sum 7.392 -12.143 -17.011 22.169 Atomic orbital electron populations 1.70173 1.06422 1.25141 1.56155 1.25612 0.96041 1.01022 1.01385 0.85365 0.78691 0.80842 0.76572 1.19210 1.22792 1.21045 1.19418 0.91964 0.86050 1.41226 0.92055 1.43672 1.28335 1.02498 1.57878 1.21009 0.97198 0.86193 0.94426 1.21709 0.95381 1.00052 0.97096 1.22889 0.97509 0.96100 0.95452 0.85372 1.23631 1.03358 0.77889 0.94678 1.50315 1.48745 1.08084 1.28306 1.17100 0.80142 0.83841 0.80783 1.90864 1.60574 1.22442 1.71540 1.19998 1.04741 0.87683 1.00089 1.27075 1.03433 1.07088 1.00662 1.82434 1.39150 0.92123 1.22819 1.27521 1.03842 0.97453 0.99125 1.98439 1.82134 1.29896 1.81985 1.66696 1.11661 1.24007 1.13647 1.23104 0.94929 0.96559 0.84232 0.88716 1.19650 0.87471 0.96835 0.90889 0.94606 0.95098 0.92974 0.94593 0.88364 0.89122 0.87743 0.78773 0.92459 0.97945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.84 10.92 21.65 0.24 -59.60 16 2 C -0.05 -2.78 4.96 84.86 0.42 -2.36 16 3 Si 0.96 49.79 29.58 68.60 2.03 51.82 16 4 H -0.27 -13.21 7.11 99.48 0.71 -12.50 16 5 H -0.30 -16.09 7.11 99.48 0.71 -15.39 16 6 H -0.28 -14.26 7.11 99.48 0.71 -13.56 16 7 C -0.26 -15.30 9.56 84.03 0.80 -14.50 16 8 H 0.06 3.60 7.84 -2.91 -0.02 3.58 16 9 N -0.60 -32.01 3.00 -708.72 -2.13 -34.14 16 10 C 0.14 5.69 6.44 86.39 0.56 6.25 16 11 C -0.10 -3.37 5.66 30.63 0.17 -3.19 16 12 C -0.10 -2.96 4.34 -10.31 -0.04 -3.01 16 13 H 0.13 2.81 8.14 -2.39 -0.02 2.79 16 14 C 0.13 3.48 7.14 86.62 0.62 4.10 16 15 N -0.62 -24.10 3.40 -818.73 -2.78 -26.88 16 16 C 0.59 25.80 7.98 86.61 0.69 26.50 16 17 O -0.57 -30.82 15.99 -4.13 -0.07 -30.88 16 18 C 0.01 0.34 6.69 40.53 0.27 0.61 16 19 C -0.24 -6.44 10.61 67.11 0.71 -5.73 16 20 S 0.38 6.31 22.96 -56.49 -1.30 5.02 16 21 C 0.02 0.52 7.98 130.69 1.04 1.56 16 22 Cl 0.05 0.78 29.33 -2.72 -0.08 0.70 16 23 N -0.44 -12.47 8.67 -183.79 -1.59 -14.06 16 24 C 0.11 4.54 4.30 43.65 0.19 4.73 16 25 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 26 C 0.18 9.37 4.68 85.87 0.40 9.77 16 27 H 0.24 15.35 8.31 -92.71 -0.77 14.57 16 28 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.05 2.16 7.88 -2.38 -0.02 2.14 16 30 H 0.04 1.35 7.69 -2.38 -0.02 1.33 16 31 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.09 2.47 7.13 -2.39 -0.02 2.45 16 33 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.20 5.21 8.03 -2.91 -0.02 5.19 16 35 H 0.06 3.60 4.89 -2.39 -0.01 3.59 16 36 H 0.00 0.16 8.03 -2.39 -0.02 0.14 16 Total: -1.00 -81.03 326.06 1.27 -79.76 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: 1.12 Total: 3.55 kcal Atomic # 6 Polarization: 18.89 SS G_CDS: 5.84 Total: 24.72 kcal Atomic # 7 Polarization: -128.41 SS G_CDS: -6.27 Total: -134.68 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -0.07 Total: -30.88 kcal Atomic # 14 Polarization: 49.79 SS G_CDS: 2.03 Total: 51.82 kcal Atomic # 16 Polarization: 6.31 SS G_CDS: -1.30 Total: 5.02 kcal Atomic # 17 Polarization: 0.78 SS G_CDS: -0.08 Total: 0.70 kcal Total: -81.03 1.27 -79.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084759312.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.349 kcal (2) G-P(sol) polarization free energy of solvation -81.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds